TCONS_00071608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071608
Unique NameTCONS_00071608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071608 ID=TCONS_00071608|Name=TCONS_00071608|organism=Clytia hemisphaerica|type=transcript|length=577bp
cggctgctttcgataCACCCCTGTGTTAAAGACCCGTTGGGGACCCCGGT
TAATgaaaaatttgcccaaatttctTCACCGTTGTGGTAAAGAAGATACC
ATAAGATTTTCACATGATGGAAAAAATACACCCTAAAATCCCTCTGCTAT
TTATTTTAGCTGGAAACAATTGAATTTTTATCCTGcttgggaagaaattt
tcatccctacTGAAAGAGAAACTTCTACCAGGGCTAACACAGGATAACAC
CAGGGTTGTATCAACTAAACGAGGGATACCAGACTTTTCTAATCATCTGG
AAATCATCAATTACATTTCTCATTGATCCTGATAAAGATTACAAGTGAGA
TCCAGGTAATGTTTTTTGTATTAAAATGGGAGTAGTGTGAGTAGTGTGTA
GCTGAGATTATAATTTACTTTTTGCCCAAGTTTGAACTCTGATCCGTTCG
AAAAGTGTGCAATGACTATTGCGTTTGAATGTCGTATCTTGATCAATGAT
CTTGATTGATGTCTTCTTGCATTCTTGCCTTTCGATAATTTCATTTGATG
GACGATTGAAAGCAGCTTGATACAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_62:162308..162884-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071608 ID=TCONS_00071608|Name=TCONS_00071608|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at scaffold_62:162308..162884- (Clytia hemisphaerica)
CGGCTGCTTTCGATACACCCCTGTGTTAAAGACCCGTTGGGGACCCCGGT
TAATGAAAAATTTGCCCAAATTTCTTCACCGTTGTGGTAAAGAAGATACC
ATAAGATTTTCACATGATGGAAAAAATACACCCTAAAATCCCTCTGCTAT
TTATTTTAGCTGGAAACAATTGAATTTTTATCCTGCTTGGGAAGAAATTT
TCATCCCTACTGAAAGAGAAACTTCTACCAGGGCTAACACAGGATAACAC
CAGGGTTGTATCAACTAAACGAGGGATACCAGACTTTTCTAATCATCTGG
AAATCATCAATTACATTTCTCATTGATCCTGATAAAGATTACAAGTGAGA
TCCAGGTAATGTTTTTTGTATTAAAATGGGAGTAGTGTGAGTAGTGTGTA
GCTGAGATTATAATTTACTTTTTGCCCAAGTTTGAACTCTGATCCGTTCG
AAAAGTGTGCAATGACTATTGCGTTTGAATGTCGTATCTTGATCAATGAT
CTTGATTGATGTCTTCTTGCATTCTTGCCTTTCGATAATTTCATTTGATG
GACGATTGAAAGCAGCTTGATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044488XLOC_044488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071608-exon-scaffold_62-1575043694:162308..162884TCONS_00071608-exon-scaffold_62-1575043694:162308..162884Clytia hemisphaericaexon
TCONS_00071608-exon-scaffold_62-1510915933:162308..162884TCONS_00071608-exon-scaffold_62-1510915933:162308..162884Clytia hemisphaericaexon
TCONS_00071608-exon-scaffold_62-1491911889:162308..162884TCONS_00071608-exon-scaffold_62-1491911889:162308..162884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:162308..162884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.803287	0.308207	0.539268	0.696222	0	0.111352	0.635238	0.0642065	1.28079	0.896151	0.109486	0.234991	0	0.0741793	0.409931	0.214481	0	0	0	0	1.13859	0.369513	0	0	0.107004	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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