TCONS_00071606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071606
Unique NameTCONS_00071606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071606 ID=TCONS_00071606|Name=TCONS_00071606|organism=Clytia hemisphaerica|type=transcript|length=1499bp
AAACAATTGAATTTTTATCCTGcttgggaagaaattttcatccctacTGA
AAGAGAAACTTCTACCAGGGCTAACACAGGATAACACCAGGGTTGTATCA
ACTAAACGAGGGATACCAGACTTTTCTAATCATCTGGAAATCATCAATTA
CATTTCTCATTGATCCTGATAAAGATTACAAGTGAGATCCAGGTGTTGGC
AAATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCATAATGACTTTCG
ATACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTTCCTGTGA
CAGTTCAAAAAGGGAATGTTATGTACACTGATGTACCTGGGTTGCCAGAC
ACTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAGAAGAAGC
TAAAAAACCACTCACTgctattttctttgtttttgcgGTCGATATGAGAA
TGGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCTTTTCAAT
GAAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACGACATAAG
ATCTTGGAGCAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAATACAAGA
CAGAAAAAGCCATATATGACCAAGTTCGTCTTGACACACAAAAACACTAC
GAACAAGATATTAAGAATTCCACGGGAATCGAGTTTTATTGCACCAAAGT
CATCTATGGTATTAACAAAAAGATAAATCCAGATAATAACATGAATGCAG
TCTTGCATTACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGAAGCATCA
CCACATTTACGTAATTTCAAAATGTTGGAAAAAGTTGTGACAAGTGCGAG
GGAAAATTGTGATTTTGAGCAACAGTTAATTGACGATCAAGAGAAAATGa
ttaaaagtttagaaaaatcaatttccacTTTAAAAGTTACAGAAGGAGTT
GCTATAGCTGCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTACAGCTTT
TTTTACTGCTGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCTGGTGCTG
CTGGTGTTGCAAAATTGACTATAGGGTCGACGAAAATAGCAATTGCTTTG
AAGGAAAAAGAGTTGAAAAGTgcgaaagaaaaattgaacaaGGACAAcct
gaaaaaatatatttctgaATATAAAGAACAATGTAAATTATTTGAAGATT
TAAAAGCAGCTCTTAATGAACGATAATATAATTTCACTAGATACACAGGA
TAATAAAGTTCGAGTATTGACAACGCACGACAATGAGTCAAATACAActt
taaattatgtttttttaatttttttgaaaaaagaacgaGGATTGATTACA
AAAGGATTtattcaatgttttgaaaaaaaatacaaacttttttttatgag
aatagtgtactttggatgagggtcaagtaagTGCCACAATTGAGGgcgaa
atattcttaacgttttcttactttttcagactttactttttttacaaac
Run BLAST on NCBI

transcript from alignment at scaffold_62:157548..162721-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071606 ID=TCONS_00071606|Name=TCONS_00071606|organism=Clytia hemisphaerica|type=transcript|length=5174bp|location=Sequence derived from alignment at scaffold_62:157548..162721- (Clytia hemisphaerica)
AAACAATTGAATTTTTATCCTGCTTGGGAAGAAATTTTCATCCCTACTGA
AAGAGAAACTTCTACCAGGGCTAACACAGGATAACACCAGGGTTGTATCA
ACTAAACGAGGGATACCAGACTTTTCTAATCATCTGGAAATCATCAATTA
CATTTCTCATTGATCCTGATAAAGATTACAAGTGAGATCCAGGTAATGTT
TTTTGTATTAAAATGGGAGTAGTGTGAGTAGTGTGTAGCTGAGATTATAA
TTTACTTTTTGCCCAAGTTTGAACTCTGATCCGTTCGAAAAGTGTGCAAT
GACTATTGCGTTTGAATGTCGTATCTTGATCAATGATCTTGATTGATGTC
TTCTTGCATTCTTGCCTTTCGATAATTTCATTTGATGGACGATTGAAAGC
AGCTTGATACAAACAGTCGTTTTCTCCTCCAGCTTCAACTTCAACAAGAA
TACCAAATCTTCTAGATTCTATTTTGATACTGGTATCAATTACTATGATT
GAATGTCTTCTTAAAAACTCATATCAATCGCCTTTTTTCTTTATGCGGTT
CTTATTGATAACACAGAAATATATATATTTTTTAAACACTACCCCATAAA
TCGTTATTTGAACTTTATGAAAATATACTCTCTTCAAGTGCGTGTAAATA
ACTTCTATTGTTTAATACAAAATAATTCTTCGAAGTGAATAACCCCTGTT
GTGCGCAGATTTGTAATACTTGCGCAGATTTGTAATACCTGCGCAGATTT
GTAATAAACTTTGTGCAAATTTGTAATACTTGAGCTGCGCAGAAATGTAA
TACTTCTCTGCGCAGATTTGTAATACTTGCGCAGATTTGTAATACCTGCG
CAGATTTGTAATAAACTTTGTGCAAATTTGTAATACTTGAGCTGCGCAGA
AATGTAATACTTCTCTGCGCAGATTTGTAATTTGGAATTTCCCACGAAGA
AAAGTTTCGAAAAAAAGACTTAGAAAATAATCAGAAAATCACACAAAGGT
TTTATATCTTTAGTATAAACACTAACTTTATAAGAAACGAATCAATATAT
TTTAATCTAATGAAAATTGGCTTTTGGCAGTTGGTTCTTTCAATACAAAC
ATGGGATTTTGAACAATTTCAATATTTTCATTTTTCTTACAAGCATCAAC
TTTATAAGAAACGAATCAATATATTTTAATCTAATGAAAATTGGCTTTTG
ACTGTTGGTTCTTTCAATACAGACATGGATTGGAAATAATTTTAAGCATT
TTCATTTTTCTTATAAGCATCAACTTTATAAGAAACGAATCAATATCTCT
CAATCTAATGGAAATTTGCTTTCGGCAGTTGGTTCTTTCAATACAAACAT
GGGATTTTGAATACAATTTCAATATTTTCATTTTTCCTATAAGCATCAAC
TTTATAAGAAACGAATCAATATCTTTTAATCTAATGAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGACAAAAATATTTTTATATCATTAATTGTTTTTTCATAACAA
AGTGCTTATAAAAATAAATATGTTCATGTTATTCTTCGTACCTTGTTAAT
TTCGCATAGCGAATAACTCTTGATAGATAGACTGGAGTCGTTTATAATGC
GTGTAATACTAATAGCAATTATAATAATAATACGGGATTTAGTTTGTATA
AATAAGACTAAAATTGTTCCAATCATTACTTTTTGCTTTGTTTCTACTAT
GTATAAATTAGTCGTCTAGCTTGTTAGACTACTTGATAGACGGTGACATA
TCTTTCGGTAACATAGTAAACAAGGGACAGCGTACAATATGAGCATATTT
ATTTTTCTTATAGGCATTTACTTTATAAGAATCAAATCAATAACTCTTGA
TAGATGGTGATATACCTTTAGGTAATTAGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATATTTATTTTTTATAAGCATATACTTTATAAGAGTTCTTA
AAAATTAAACAACAATAGTTCTTAAATTGGTCTTATTTTTTTAGAGATTT
TAAGCCTCGTTGGTATTGTAAAATTGTTTCATCAAGGCTCGATGTAAAGT
ACATTTGAGATTAGCTTCAATCTCTACGTCTTGTTTTTCCCATGTAGTTC
AAATTGTAGGCGAAATTTGTTTACTTCGAAATAAACAATCACCGACAAGA
AATAATTTTTATTTTACGAGTTATTGATTAGTTTCTTATAAAAGCAGTTC
TTATAAAAAATAAATATGTTCATGTTATTCTTCGTACCTTGTTTACTTTG
AAATAAACAGTGACCGACAAGAAATAATTTTTATTTTACGAGTTATTGAT
TAGTTTCTTATAAAAGCAGTTCTTATAAAAAATGTACATGCTCATGTTAT
TCTTCGCACCTTGTTTACTTTGAAATAAACAGTTACCGACAAGAAATAAT
TTTACGAGTTATTGATTAGTTTCTTATAAAAGCAGTTCTTATAAAAAATT
ATGTCCGCGCTATTCTCATAAACAATTTATATATTACCAGATAAATTTCT
TATAAAAGCAGTTCTTATAAAAAATTATGTCCGCGCTATTCTCATAAACA
ATTTATATATTACCAGATAAATTTCTTATAAAAGCACTGCTTAGAAAAGA
AATATTAATTGATTATTTATTCAATGTGCACAGTGATGACGTTCGATGAT
CAAGGATTCAATTCAGTGAAAATTGTTATAGCACCTTTCTATAAGATCTT
CATTTTTTTCTTCTTCATTTTTATCTTCATTTTTAGAATTTTTTAAAGAT
TATTTTATTTCAAATTGTTTCAGTCACTAATATCTTTCCAACGATACCAA
ATTTAAAAATATTAAAGCAATTCTTTAAAAGTTATAGGTAAAAGAAAAAA
GAGTGCACACTTATCGTGAACAGACTTTAATTAAAATAGTTAAGCTACAA
ATATATTCATCTGATAATGTTTTTTTAGGGCAACCAATTGGTTAGTAGAA
TCTGCAGACGCACCAAAAATAATAAGTTACCTCGACAACCAAAACTATAA
AAATCTTAAAGTAAAGGTAATCTGACTTTATTTGTCACCCTTTCAATTTC
GTCTACAGATAGAACAGGTGACAAAAACAAACAAGTCTTGACTTTTTTCA
AGGTTTGAGGGTGTATATGCTTTTAAGCGCTGCGTATTGTTCAACGGTTT
TCTTTTTTTCTTTCTTTTCTATTGACTACGATAATTTTAATGCAATGACA
GATTTATAAAAAAATAGCATGGATTTAAGCAAAGGAATAATAAGAATCAT
GTCTGTTGGGCCAACAGGTGTTGGCAAATCAACAATTGGAAACAAGCTTC
TTGGCCTATCGCATAATGACTTTCGATACTTGAAAGCAGAAGCATCATCG
ATGAGTTGTACTCAAGTTCCTGTGACAGTTCAAAAAGGGAATGTTATGTA
CACTGATGTACCTGGGTTGCCAGACACTAATCCAGATAAAACAAAGATCG
TTTATGATGTTATCATAGAAGAAGCTAAAAAACCACTCACTGCTATTTTC
TTTGTTTTTGCGGTCGATATGAGAATGGATAAAGCAACGAAAGATCGGAT
TAGGAATTGTTCATTGCTTTTCAATGAAATCAATAGATGCTCTGCTGCTA
AGATCCTGATTCTAAACGACATAAGATCTTGGAGCAATCCAAATTGCTTA
GAGGAGAAAAGTGAGGAATACAAGACAGAAAAAGCCATATATGACCAAGT
TCGTCTTGACACACAAAAACACTACGAACAAGATATTAAGAATTCCACGG
GAATCGAGTTTTATTGCACCAAAGTCATCTATGGTATTAACAAAAAGATA
AATCCAGATAATAACATGAATGCAGTCTTGCATTACCTGGAATTGACTCT
TCAGAGCTTCCCTTGTGAAGCATCACCACATTTACGTAATTTCAAAATGT
TGGAAAAAGTTGTGACAAGTGCGAGGGAAAATTGTGATTTTGAGCAACAG
TTAATTGACGATCAAGAGAAAATGATTAAAAGTTTAGAAAAATCAATTTC
CACTTTAAAAGTTACAGAAGGAGTTGCTATAGCTGCTACAGGCGCAGTTG
CTGTAACAGCTGTAGTTACAGCTTTTTTTACTGCTGGTGTTTCATTAGTG
ATTGGAGGTGTCGCTGCTGGTGCTGCTGGTGTTGCAAAATTGACTATAGG
GTCGACGAAAATAGCAATTGCTTTGAAGGAAAAAGAGTTGAAAAGTGCGA
AAGAAAAATTGAACAAGGACAACCTGAAAAAATATATTTCTGAATATAAA
GAACAATGTAAATTATTTGAAGATTTAAAAGCAGCTCTTAATGAACGATA
ATATAATTTCACTAGATACACAGGATAATAAAGTTCGAGTATTGACAACG
CACGACAATGAGTCAAATACAACTTTAAATTATGTTTTTTTAATTTTTTT
GAAAAAAGAACGAGGATTGATTACAAAAGGATTTATTCAATGTTTTGAAA
AAAAATACAAACTTTTTTTTATGAGAATAGTGTACTTTGGATGAGGGTCA
AGTAAGTGCCACAATTGAGGGCGAAATATTCTTAACGTTTTCTTACTTTT
TCAGACTTTACTTTTTTTACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044488XLOC_044488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071606-exon-scaffold_62-1575043694:162530..162721TCONS_00071606-exon-scaffold_62-1575043694:162530..162721Clytia hemisphaericaexon
TCONS_00071606-exon-scaffold_62-1575043694:157548..158854TCONS_00071606-exon-scaffold_62-1575043694:157548..158854Clytia hemisphaericaexon
TCONS_00071606-exon-scaffold_62-1510915933:162530..162721TCONS_00071606-exon-scaffold_62-1510915933:162530..162721Clytia hemisphaericaexon
TCONS_00071606-exon-scaffold_62-1510915933:157548..158854TCONS_00071606-exon-scaffold_62-1510915933:157548..158854Clytia hemisphaericaexon
TCONS_00071606-exon-scaffold_62-1491911889:162530..162721TCONS_00071606-exon-scaffold_62-1491911889:162530..162721Clytia hemisphaericaexon
TCONS_00071606-exon-scaffold_62-1491911889:157548..158854TCONS_00071606-exon-scaffold_62-1491911889:157548..158854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:157548..162721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.70368	2.13196	2.47176	3.51819	0.943272	1.88709e-09	1.8141	0	1.16866	1.26375	3.24656	3.05395	0	0.00313999	0	1.08664	0	0	0	0	1.00831	0.425455	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top