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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071605 ID=TCONS_00071605|Name=TCONS_00071605|organism=Clytia hemisphaerica|type=transcript|length=1584bp
CAATTGAATTTTTATCCTGcttgggaagaaattttcatccctacTGAAAG
AGAAACTTCTACCAGGGCTAACACAGGATAACACCAGGGTTGTATCAACT
AAACGAGGGATACCAGACTTTTCTAATCATCTGGAAATCATCAATTACAT
TTCTCATTGATCCTGATAAAGATTACAAGTGAGATCCAGGGCAACCAATT
GGTTAGTAGAATCTGCAGACGCACCAAAAATAATAAGTTACCTCGACAAC
CAAAACTATAAAAATCTTAAAGTAAAGGTGTTGGCAAATCAACAATTGGA
AACAAGCTTCTTGGCCTATCGCATAATGACTTTCGATACTTGAAAGCAGA
AGCATCATCGATGAGTTGTACTCAAGTTCCTGTGACAGTTCAAAAAGGGA
ATGTTATGTACACTGATGTACCTGGGTTGCCAGACACTAATCCAGATAAA
ACAAAGATCGTTTATGATGTTATCATAGAAGAAGCTAAAAAACCACTCAC
TgctattttctttgtttttgcgGTCGATATGAGAATGGATAAAGCAACGA
AAGATCGGATTAGGAATTGTTCATTGCTTTTCAATGAAATCAATAGATGC
TCTGCTGCTAAGATCCTGATTCTAAACGACATAAGATCTTGGAGCAATCC
AAATTGCTTAGAGGAGAAAAGTGAGGAATACAAGACAGAAAAAGCCATAT
ATGACCAAGTTCGTCTTGACACACAAAAACACTACGAACAAGATATTAAG
AATTCCACGGGAATCGAGTTTTATTGCACCAAAGTCATCTATGGTATTAA
CAAAAAGATAAATCCAGATAATAACATGAATGCAGTCTTGCATTACCTGG
AATTGACTCTTCAGAGCTTCCCTTGTGAAGCATCACCACATTTACGTAAT
TTCAAAATGTTGGAAAAAGTTGTGACAAGTGCGAGGGAAAATTGTGATTT
TGAGCAACAGTTAATTGACGATCAAGAGAAAATGattaaaagtttagaaa
aatcaatttccacTTTAAAAGTTACAGAAGGAGTTGCTATAGCTGCTACA
GGCGCAGTTGCTGTAACAGCTGTAGTTACAGCTTTTTTTACTGCTGGTGT
TTCATTAGTGATTGGAGGTGTCGCTGCTGGTGCTGCTGGTGTTGCAAAAT
TGACTATAGGGTCGACGAAAATAGCAATTGCTTTGAAGGAAAAAGAGTTG
AAAAGTgcgaaagaaaaattgaacaaGGACAAcctgaaaaaatatatttc
tgaATATAAAGAACAATGTAAATTATTTGAAGATTTAAAAGCAGCTCTTA
ATGAACGATAATATAATTTCACTAGATACACAGGATAATAAAGTTCGAGT
ATTGACAACGCACGACAATGAGTCAAATACAActttaaattatgtttttt
taatttttttgaaaaaagaacgaGGATTGATTACAAAAGGATTtattcaa
tgttttgaaaaaaaatacaaacttttttttatgagaatagtgtactttgg
atgagggtcaagtaagTGCCACAATTGAGGgcgaaatattcttaacgttt
tcttactttttcagactttactttttttacaaac Run BLAST on NCBI transcript from alignment at scaffold_62:157548..162718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071605 ID=TCONS_00071605|Name=TCONS_00071605|organism=Clytia hemisphaerica|type=transcript|length=5171bp|location=Sequence derived from alignment at scaffold_62:157548..162718- (Clytia hemisphaerica)
CAATTGAATTTTTATCCTGCTTGGGAAGAAATTTTCATCCCTACTGAAAG
AGAAACTTCTACCAGGGCTAACACAGGATAACACCAGGGTTGTATCAACT
AAACGAGGGATACCAGACTTTTCTAATCATCTGGAAATCATCAATTACAT
TTCTCATTGATCCTGATAAAGATTACAAGTGAGATCCAGGTAATGTTTTT
TGTATTAAAATGGGAGTAGTGTGAGTAGTGTGTAGCTGAGATTATAATTT
ACTTTTTGCCCAAGTTTGAACTCTGATCCGTTCGAAAAGTGTGCAATGAC
TATTGCGTTTGAATGTCGTATCTTGATCAATGATCTTGATTGATGTCTTC
TTGCATTCTTGCCTTTCGATAATTTCATTTGATGGACGATTGAAAGCAGC
TTGATACAAACAGTCGTTTTCTCCTCCAGCTTCAACTTCAACAAGAATAC
CAAATCTTCTAGATTCTATTTTGATACTGGTATCAATTACTATGATTGAA
TGTCTTCTTAAAAACTCATATCAATCGCCTTTTTTCTTTATGCGGTTCTT
ATTGATAACACAGAAATATATATATTTTTTAAACACTACCCCATAAATCG
TTATTTGAACTTTATGAAAATATACTCTCTTCAAGTGCGTGTAAATAACT
TCTATTGTTTAATACAAAATAATTCTTCGAAGTGAATAACCCCTGTTGTG
CGCAGATTTGTAATACTTGCGCAGATTTGTAATACCTGCGCAGATTTGTA
ATAAACTTTGTGCAAATTTGTAATACTTGAGCTGCGCAGAAATGTAATAC
TTCTCTGCGCAGATTTGTAATACTTGCGCAGATTTGTAATACCTGCGCAG
ATTTGTAATAAACTTTGTGCAAATTTGTAATACTTGAGCTGCGCAGAAAT
GTAATACTTCTCTGCGCAGATTTGTAATTTGGAATTTCCCACGAAGAAAA
GTTTCGAAAAAAAGACTTAGAAAATAATCAGAAAATCACACAAAGGTTTT
ATATCTTTAGTATAAACACTAACTTTATAAGAAACGAATCAATATATTTT
AATCTAATGAAAATTGGCTTTTGGCAGTTGGTTCTTTCAATACAAACATG
GGATTTTGAACAATTTCAATATTTTCATTTTTCTTACAAGCATCAACTTT
ATAAGAAACGAATCAATATATTTTAATCTAATGAAAATTGGCTTTTGACT
GTTGGTTCTTTCAATACAGACATGGATTGGAAATAATTTTAAGCATTTTC
ATTTTTCTTATAAGCATCAACTTTATAAGAAACGAATCAATATCTCTCAA
TCTAATGGAAATTTGCTTTCGGCAGTTGGTTCTTTCAATACAAACATGGG
ATTTTGAATACAATTTCAATATTTTCATTTTTCCTATAAGCATCAACTTT
ATAAGAAACGAATCAATATCTTTTAATCTAATGAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGACAAAAATATTTTTATATCATTAATTGTTTTTTCATAACAAAGT
GCTTATAAAAATAAATATGTTCATGTTATTCTTCGTACCTTGTTAATTTC
GCATAGCGAATAACTCTTGATAGATAGACTGGAGTCGTTTATAATGCGTG
TAATACTAATAGCAATTATAATAATAATACGGGATTTAGTTTGTATAAAT
AAGACTAAAATTGTTCCAATCATTACTTTTTGCTTTGTTTCTACTATGTA
TAAATTAGTCGTCTAGCTTGTTAGACTACTTGATAGACGGTGACATATCT
TTCGGTAACATAGTAAACAAGGGACAGCGTACAATATGAGCATATTTATT
TTTCTTATAGGCATTTACTTTATAAGAATCAAATCAATAACTCTTGATAG
ATGGTGATATACCTTTAGGTAATTAGTTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATATTTATTTTTTATAAGCATATACTTTATAAGAGTTCTTAAAA
ATTAAACAACAATAGTTCTTAAATTGGTCTTATTTTTTTAGAGATTTTAA
GCCTCGTTGGTATTGTAAAATTGTTTCATCAAGGCTCGATGTAAAGTACA
TTTGAGATTAGCTTCAATCTCTACGTCTTGTTTTTCCCATGTAGTTCAAA
TTGTAGGCGAAATTTGTTTACTTCGAAATAAACAATCACCGACAAGAAAT
AATTTTTATTTTACGAGTTATTGATTAGTTTCTTATAAAAGCAGTTCTTA
TAAAAAATAAATATGTTCATGTTATTCTTCGTACCTTGTTTACTTTGAAA
TAAACAGTGACCGACAAGAAATAATTTTTATTTTACGAGTTATTGATTAG
TTTCTTATAAAAGCAGTTCTTATAAAAAATGTACATGCTCATGTTATTCT
TCGCACCTTGTTTACTTTGAAATAAACAGTTACCGACAAGAAATAATTTT
ACGAGTTATTGATTAGTTTCTTATAAAAGCAGTTCTTATAAAAAATTATG
TCCGCGCTATTCTCATAAACAATTTATATATTACCAGATAAATTTCTTAT
AAAAGCAGTTCTTATAAAAAATTATGTCCGCGCTATTCTCATAAACAATT
TATATATTACCAGATAAATTTCTTATAAAAGCACTGCTTAGAAAAGAAAT
ATTAATTGATTATTTATTCAATGTGCACAGTGATGACGTTCGATGATCAA
GGATTCAATTCAGTGAAAATTGTTATAGCACCTTTCTATAAGATCTTCAT
TTTTTTCTTCTTCATTTTTATCTTCATTTTTAGAATTTTTTAAAGATTAT
TTTATTTCAAATTGTTTCAGTCACTAATATCTTTCCAACGATACCAAATT
TAAAAATATTAAAGCAATTCTTTAAAAGTTATAGGTAAAAGAAAAAAGAG
TGCACACTTATCGTGAACAGACTTTAATTAAAATAGTTAAGCTACAAATA
TATTCATCTGATAATGTTTTTTTAGGGCAACCAATTGGTTAGTAGAATCT
GCAGACGCACCAAAAATAATAAGTTACCTCGACAACCAAAACTATAAAAA
TCTTAAAGTAAAGGTAATCTGACTTTATTTGTCACCCTTTCAATTTCGTC
TACAGATAGAACAGGTGACAAAAACAAACAAGTCTTGACTTTTTTCAAGG
TTTGAGGGTGTATATGCTTTTAAGCGCTGCGTATTGTTCAACGGTTTTCT
TTTTTTCTTTCTTTTCTATTGACTACGATAATTTTAATGCAATGACAGAT
TTATAAAAAAATAGCATGGATTTAAGCAAAGGAATAATAAGAATCATGTC
TGTTGGGCCAACAGGTGTTGGCAAATCAACAATTGGAAACAAGCTTCTTG
GCCTATCGCATAATGACTTTCGATACTTGAAAGCAGAAGCATCATCGATG
AGTTGTACTCAAGTTCCTGTGACAGTTCAAAAAGGGAATGTTATGTACAC
TGATGTACCTGGGTTGCCAGACACTAATCCAGATAAAACAAAGATCGTTT
ATGATGTTATCATAGAAGAAGCTAAAAAACCACTCACTGCTATTTTCTTT
GTTTTTGCGGTCGATATGAGAATGGATAAAGCAACGAAAGATCGGATTAG
GAATTGTTCATTGCTTTTCAATGAAATCAATAGATGCTCTGCTGCTAAGA
TCCTGATTCTAAACGACATAAGATCTTGGAGCAATCCAAATTGCTTAGAG
GAGAAAAGTGAGGAATACAAGACAGAAAAAGCCATATATGACCAAGTTCG
TCTTGACACACAAAAACACTACGAACAAGATATTAAGAATTCCACGGGAA
TCGAGTTTTATTGCACCAAAGTCATCTATGGTATTAACAAAAAGATAAAT
CCAGATAATAACATGAATGCAGTCTTGCATTACCTGGAATTGACTCTTCA
GAGCTTCCCTTGTGAAGCATCACCACATTTACGTAATTTCAAAATGTTGG
AAAAAGTTGTGACAAGTGCGAGGGAAAATTGTGATTTTGAGCAACAGTTA
ATTGACGATCAAGAGAAAATGATTAAAAGTTTAGAAAAATCAATTTCCAC
TTTAAAAGTTACAGAAGGAGTTGCTATAGCTGCTACAGGCGCAGTTGCTG
TAACAGCTGTAGTTACAGCTTTTTTTACTGCTGGTGTTTCATTAGTGATT
GGAGGTGTCGCTGCTGGTGCTGCTGGTGTTGCAAAATTGACTATAGGGTC
GACGAAAATAGCAATTGCTTTGAAGGAAAAAGAGTTGAAAAGTGCGAAAG
AAAAATTGAACAAGGACAACCTGAAAAAATATATTTCTGAATATAAAGAA
CAATGTAAATTATTTGAAGATTTAAAAGCAGCTCTTAATGAACGATAATA
TAATTTCACTAGATACACAGGATAATAAAGTTCGAGTATTGACAACGCAC
GACAATGAGTCAAATACAACTTTAAATTATGTTTTTTTAATTTTTTTGAA
AAAAGAACGAGGATTGATTACAAAAGGATTTATTCAATGTTTTGAAAAAA
AATACAAACTTTTTTTTATGAGAATAGTGTACTTTGGATGAGGGTCAAGT
AAGTGCCACAATTGAGGGCGAAATATTCTTAACGTTTTCTTACTTTTTCA
GACTTTACTTTTTTTACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071605-exon-scaffold_62-1575043694:162530..162718 | TCONS_00071605-exon-scaffold_62-1575043694:162530..162718 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1575043694:159106..159193 | TCONS_00071605-exon-scaffold_62-1575043694:159106..159193 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1575043694:157548..158854 | TCONS_00071605-exon-scaffold_62-1575043694:157548..158854 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1510915933:162530..162718 | TCONS_00071605-exon-scaffold_62-1510915933:162530..162718 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1510915933:159106..159193 | TCONS_00071605-exon-scaffold_62-1510915933:159106..159193 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1510915933:157548..158854 | TCONS_00071605-exon-scaffold_62-1510915933:157548..158854 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1491911889:162530..162718 | TCONS_00071605-exon-scaffold_62-1491911889:162530..162718 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1491911889:159106..159193 | TCONS_00071605-exon-scaffold_62-1491911889:159106..159193 | Clytia hemisphaerica | exon |
| TCONS_00071605-exon-scaffold_62-1491911889:157548..158854 | TCONS_00071605-exon-scaffold_62-1491911889:157548..158854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:157548..162718 - |
Blast
The following BLAST results are available for this feature:
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