TCONS_00071602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071602
Unique NameTCONS_00071602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071602 ID=TCONS_00071602|Name=TCONS_00071602|organism=Clytia hemisphaerica|type=transcript|length=324bp
CACGGTTGATACTTGGCATTGTTGCCAAATCCCGGGAGGAGCTCAAGGAG
CTTCTCAAAGCTCAAAAGAAAGTAGAGAGTGTGAGCGCATACAATTCCAG
AGCCCGAGCCTCATCATCGTCGTCTTCTTCACGGTTCTCGCCATACACAA
AGGTGAAGGAGAGAAAATGATCGTTTGTGTCGTATTTGTTTGGTTCTTTG
TTGCGTTTCGTTGGATTGTTTGTGTAGTTGTAGTACATGTTAGAATACCT
TTTTGAGTTCtatgtatttatttttattttttctataaatttttTATACT
CTTCCTGAAGAATCTACAGCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_62:88092..88891-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071602 ID=TCONS_00071602|Name=TCONS_00071602|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_62:88092..88891- (Clytia hemisphaerica)
CACGGTTGATACTTGGCATTGTTGCCAAATCCCGGGAGGAGCTCAAGGAG
CTTCTCAAAGCTCAAAAGAAAGTAGAGAGTGGTAAGAAAAATTACATGAT
TTAGTTACCGTTTCGGTAGGCTGACCATGAGTCAGTCAGTAGGAATAGTT
TTGGGCCCTTTTTTGGCCATTTTTGATGACCTGTCTTTTTCAGTACAAAT
CTCTGTAAACACAATTTTAAAAAAGTTCTGGAAAGGGAATTTCGACTTCC
ATCTGAAATTTGGCTAGAAAAGTAGACATTTAAAAGTACTATTTTGAAAT
GGTATTGTTTATAGGGTTTTCGTATTTAGATTGCAAGATATCTTTAAGTT
TGAAGTTTGATTTTTGCTGCAAAATTTGTTTAATTTTAAACTTTAAATTT
CTGTTACAAGTCATCGAAAAACGACCCAAATGGCCCACTGACTAATTGAT
GAAATAGTTCAAAAACTCATTTATTGCTGGCATTTTTTTCATTAGCTTTT
ACAGTATCTTGTGATAAATTTACAACAATAAAACTGTACTCCATACTTTT
CTTTTAGTGAGCGCATACAATTCCAGAGCCCGAGCCTCATCATCGTCGTC
TTCTTCACGGTTCTCGCCATACACAAAGGTGAAGGAGAGAAAATGATCGT
TTGTGTCGTATTTGTTTGGTTCTTTGTTGCGTTTCGTTGGATTGTTTGTG
TAGTTGTAGTACATGTTAGAATACCTTTTTGAGTTCTATGTATTTATTTT
TATTTTTTCTATAAATTTTTTATACTCTTCCTGAAGAATCTACAGCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044487XLOC_044487Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071602-exon-scaffold_62-1575043694:88811..88891TCONS_00071602-exon-scaffold_62-1575043694:88811..88891Clytia hemisphaericaexon
TCONS_00071602-exon-scaffold_62-1575043694:88092..88334TCONS_00071602-exon-scaffold_62-1575043694:88092..88334Clytia hemisphaericaexon
TCONS_00071602-exon-scaffold_62-1510915933:88811..88891TCONS_00071602-exon-scaffold_62-1510915933:88811..88891Clytia hemisphaericaexon
TCONS_00071602-exon-scaffold_62-1510915933:88092..88334TCONS_00071602-exon-scaffold_62-1510915933:88092..88334Clytia hemisphaericaexon
TCONS_00071602-exon-scaffold_62-1491911889:88811..88891TCONS_00071602-exon-scaffold_62-1491911889:88811..88891Clytia hemisphaericaexon
TCONS_00071602-exon-scaffold_62-1491911889:88092..88334TCONS_00071602-exon-scaffold_62-1491911889:88092..88334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:88092..88891 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.300817	0	0	0	0.328731	0.7932	1.48517	2.0796	0.965971	1.87519	3.69803	1.84644	2.76979	1.05099	1.50383	0	1.42414	0	0.343146	0.596512	0.436437	1.06109	0	0	1.47795	0	0	0	0.69768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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