TCONS_00071601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071601
Unique NameTCONS_00071601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071601 ID=TCONS_00071601|Name=TCONS_00071601|organism=Clytia hemisphaerica|type=transcript|length=256bp
cagaaaatcaaacaaaaatattatataaaatcAAACAGACAACTGGCTTT
GCAATAATCATCTCCTCTAAATTCATGATTAAATTTTAAACATAAAATGT
GCAAGATGATTTGCAGCGCAACCCATATCAATCCATCAACCTGCGTCAAC
TATCCCACCatATTTGTCGAATTTCCTGATACTTCCATGTGTAAATAAAT
CGACTGGAAAGTGTTCATGTTTACAAGCAAACTTCATGGTGAACCCTTGG
TAATCA
Run BLAST on NCBI

transcript from alignment at scaffold_62:61647..62170-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071601 ID=TCONS_00071601|Name=TCONS_00071601|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at scaffold_62:61647..62170- (Clytia hemisphaerica)
CAGAAAATCAAACAAAAATATTATATAAAATCAAACAGACAACTGGCTTT
GCAATAATCATCTCCTCTAAATTCATGATTAAATTTTAAACGTAAGTGAA
ACTTGATTTATACACTCTGTTAAATTTGTTAATATTATTTCTTATGTTTG
AACATGCTGGCATTTAGATTGCCTCGTCAATAATGATTGCTCTTTTCACA
TATAGATAAAATGTGCAAGATGATTTGCAGCGCAACCCATATCAATCCAT
CAACCTGCGTCAACTATCCCACCGTAAGTTCTCCAACTTCGTATCAGAGT
TCTTTCAATGTTTATGTCCTTCCGTACTGTATCATGCTTTGTTCTTTTTA
TTAGAATGAAAATCGCTTAAAGGTATTTTTTTTAGAAGATAAACAAAGCT
ATCACAACAAAAATTTATTTTCATTAGATATTTGTCGAATTTCCTGATAC
TTCCATGTGTAAATAAATCGACTGGAAAGTGTTCATGTTTACAAGCAAAC
TTCATGGTGAACCCTTGGTAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044486XLOC_044486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071601-exon-scaffold_62-1575043694:62080..62170TCONS_00071601-exon-scaffold_62-1575043694:62080..62170Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1575043694:61898..61965TCONS_00071601-exon-scaffold_62-1575043694:61898..61965Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1575043694:61647..61743TCONS_00071601-exon-scaffold_62-1575043694:61647..61743Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1510915933:62080..62170TCONS_00071601-exon-scaffold_62-1510915933:62080..62170Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1510915933:61898..61965TCONS_00071601-exon-scaffold_62-1510915933:61898..61965Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1510915933:61647..61743TCONS_00071601-exon-scaffold_62-1510915933:61647..61743Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1491911889:62080..62170TCONS_00071601-exon-scaffold_62-1491911889:62080..62170Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1491911889:61898..61965TCONS_00071601-exon-scaffold_62-1491911889:61898..61965Clytia hemisphaericaexon
TCONS_00071601-exon-scaffold_62-1491911889:61647..61743TCONS_00071601-exon-scaffold_62-1491911889:61647..61743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:61647..62170 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.82363	2.97503	3.58925	5.88036	48.0329	49.2332	46.3483	32.3015	31.9214	31.4895	1.91866	3.40244	4.19152	1.98011	0.218735	0.776371	0	0	0	0	2.12354	3.88535	0.61958	1.68258	2.32398	0.232688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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