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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071599 ID=TCONS_00071599|Name=TCONS_00071599|organism=Clytia hemisphaerica|type=transcript|length=1633bp
ACAACATCGGACACTGTTTAATGAATTTATCTCATTATCATGACGCATTA
CGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACACTCTCGGTGAACG
TCACAACGATTACCTCACCACAAAACACAACATCGGAAACTGTTTAATGG
ATTTATCTCATCATCATGACGCATTACGTATATTTAAAGAAATCGAAACC
GTTGAAAAGGAAACCTTCGGTGAACGTCACAACAGTTACCTCGCGACAAA
GCACAACATCGGACGATGTTTAATGAATTTATCTCATCATCATGACGCAT
TAcgtatatttaaagaaattgaAGCCGTTAAAAAGGACACCCTTGGTGAA
CGTCACAACGATTACCTCACCACAAAACACGGCATCGGACAATGTTTAAT
GAATTTATCTCATTATCATGAAGCATTACGTATATTCAAAGAAATCGAAA
TAGTATGGAATAAAACAATAGGCCAGAGACATGGGAATTACTTGATTGGC
AAAATCTATATCGGAGAATGCTTGAAGAGAATGAAAGCATTCGACGATGC
GTTACAAATTTTCGAATCATCCAAACCAATATTGTCAGAAGTTTTTGGTG
ACCATCACGATCGATACTTGAGAAACGATTTCCACATCGGTCATGTTCTA
ACAATGAAAGGACGTTTTGACGATGCATTGAAAATTCTTGAATCAACACA
AACAAAACAGATCGAAATATTCGACAAATCCCATCTGGAAGTTTTAAAAA
CGACAAGCGTTATTGGACGTTGTTTGGCAGAAAGAGGACTTTTTGATAAA
GCCCATGATACTTTATCACAAACCCTTGAAGATGGCTTACAGGTGTTGGA
TAAAGAACATCTAATTATTCTCTCCATCAGAATCAATTTGGCACACTGCT
TGTTTGGtatgaaaaagattgaagaagcaATGATTCATTTGACTGAAGTT
GAAGAGATATCTTTGCAACGGTTCGGTGATCATCATTCGATTTATCGTGA
AGCAGTCGAAATGAAAGAACATCACGAACAGAAACAGAAGCAAAAAGAAG
AAGGTGTAGATGTTTCACCTGTTACTGAAAGGATGCAATCAGCAAAGTTG
GAATGAGTTCTGTCTTTGGAAAAGAACATTGATAAATAACCACACACtGT
TGGTCGAAAGACGAAAGAAAACTAACAACTAGATAACAATTATTGGATCG
AgtaaaataaacaacaataatgAAAGTTGAACTTTGTTTGTACAATGTAT
AATAAAACCTATACGAATTTTTCAGAATAGTATCAATCTATTCTGTCTGG
TTATGGACCTGTGAAACGAGTGGATTGCAATGACGATGAttgattttcat
aaattactctTACTCTATCAAAAACATTAGTTTTTTTCGCAATAAGCATT
TTATACACTACtaaatatatttaattttgggTTTTATAACTATTTTTGAT
ATaacatttatttcaaaattattcaaTAGTGTTGTtcttatgtttatttt
tttttttgctagatTAATAAGAATTTACCCGTAATACCATTTTACAGAAC
GAATCAATTTATCAGATTATTGACACTAACTTTATGTAAAGGATTCTTTG
CTCATGCAAAATATAAAAGGTAGAATATTGAAG Run BLAST on NCBI transcript from alignment at scaffold_62:453692..457804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071599 ID=TCONS_00071599|Name=TCONS_00071599|organism=Clytia hemisphaerica|type=transcript|length=4113bp|location=Sequence derived from alignment at scaffold_62:453692..457804+ (Clytia hemisphaerica)
ACAACATCGGACACTGTTTAATGAATTTATCTCATTATCATGACGCATTA
CGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACATCCTCGGCGAACG
TCACAACGATTACCTCACCACAAAACACAACATCGGACACTGTTTAATGA
ATTTATCTCATCATCATGACGCATTACGTATATTCAAAGAAATCGAAACC
GTTGAAAAGGACACCCTCGGTGAACGTCACAACAGTTACCTCTCCACAAA
GCACAACATCGGACACTGTTTAATGAATTTATCTCATCATCAAGAAGCAT
TACGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACATCCTCGGCGAA
CGTCACAACGATTACCTCACCACAAAGCACGCCATCGGACACTGTTTAGT
GAAGTTATCTCATTATCATGACGCATTACGTATATTTAAAGAAATCGAAA
CCGTTGAAAAGGAAACCCTCGGTGAACGTCACAACGATTACCTCAGCACA
AAGCACAACATCGGACACTGTTTAATGAATTTATCTCATTATCATGACGC
ATTACGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACATCCTCGGCG
AACGTCACAACGATTACCTCACCACAAAACACAACATCGGACACTGTTTA
ATGAATTTATCTCATCATCATGACGCATTACGTATATTCAAAGAAATCGA
AACCGTTGAAAAGGACACCCTCGGTGAACGTCACAACAGTTACCTCTCCA
CAAAGCACAACATCGGACACTGTTTAATGAATTTATCTCATCATCAAGAA
GCATTACGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACATCCTCGG
CGAACGTCACAACGATTACCTCACCACAAAGCACGCCATCGGACACTGTT
TAGTGAAGTTATCTCATTATCATGACGCATTACGTATATTTAAAGAAATC
GAAACCGTTGAAAAGGAAACCCTCGGTGAACGTCACAACGATTACCTCAG
CACAAAGCACAACATCGGACACTGTTTAATGAATTTATCTCATTATCATG
ACGCATTACGTATATTCAAAGAAATCGAAACCGTTCGAAAGGACATCCTC
GGCGAACGTCACAACGATTACCTCACCACAAAGCACAACATCGGAAACTG
TTTAATGGATTTATCTCATCATCATGACGCATTACGTATATTCAAAGAAA
TCGAAACCGTTCAAAAGGACACCCTCGGTGAACGTCACAACAGTTACCTC
ACCACAAAGCACAACATCGGACAATGTTTAACGGATTTATCTCATCATCA
TGAAGCATTACGTATATTCAAAGAAATCGAAACCGTTCAAAAGGACACTC
TCGGTGAACGTCACAACGATTACCTCACCACAAAACACAACATCGGAAAC
TGTTTAATGGATTTATCTCATCATCATGACGCATTACGTATATTTAAAGA
AATCGAAACCGTTGAAAAGGAAACCTTCGGTGAACGTCACAACAGTTACC
TCGCGACAAAGCACAACATCGGACGATGTTTAATGAATTTATCTCATCAT
CATGACGCATTAcgtatatttaaagaaattgaAGCCGTTAAAAAGGACAC
CCTTGGTGAACGTCACAACGATTACCTCACCACAAAACACGGCATCGGAC
AATGTTTAATGAATTTATCTCATTATCATGAAGCATTACGTATATTCAAA
GAAATCGAAATAGTATGGAATAAAACAATAGGCCAGAGACATGGGAATTA
CTTGATTGGCAAAATCTATATCGGAGAATGCTTGAAGAGAATGAAAGCAT
TCGACGATGCGTTACAAATTTTCGAATCATCCAAACCAATATTGTCAGAA
GTTTTTGGTGACCATCACGATCGATACTTGAGAAACGATTTCCACATCGG
TCATGTTCTAACAATGAAAGGACGTTTTGACGATGCATTGAAAATTCTTG
AATCAACACAAACAAAACAGATCGAAATATTCGACAAATCCCATCTGGAA
GTTTTAAAAACGACAAGCGTTATTGGACGTTGTTTGGCAGAAAGAGGACT
TTTTGATAAAGCCCATGATACTTTATCACAAACCCTTGAAGATGGCTTAC
AGGTGTTGGATAAAGAACATCTAATTATTCTCTCCATCAGAATCAATTTG
GCACACTGCTTGTTTGGtatgaaaaagattgaagaagcaATGATTCATTT
GACTGAAGTTGAAGAGATATCTTTGCAACGGTTCGGTGATCATCATTCGA
TTTATCGTGAAGCAGTCGAAATGAAAGAACATCACGAACAGAAACAGAAG
CAAAAAGAAGAAGGTGTAGATGTTTCACCTGGTAAGTTCACACTTTATAT
TTACATTTATTTTCCTGAACTTGGGAAGGACGAAACCAAGGAAGTAAAAG
CCCGAAGGGGTAGAAGCAAATCTGCTAGGTTTGATTTAAAGCCGCTGAAT
CCTACCTAAGTTGCGCCGGCTTGAGCGGCCCATatggtttttatacaaat
ttcagattgaaagtaaaaatttCCGCTAGATTATTATAcaacttgaaaac
aaagaaacagcTAAATTCTATCAGTCGTCAAAAATAAGGCACATGTTCTA
AAGCTTCACCTTTTCGAAGATTTGCTTCATTAgagattttttagtttttg
tcaaGTCAGGATTTGGTGCTAAGTTTCATTTGAACCATATTTTTGGCAAA
CCAtctctttaaaattgaaaattgaaaatctctGATTTAAGGGATTGATT
TTTACGTATGACATTATTTTTATGGATCACACAATGGCTTGGGATAAAAG
CTTTGAGTTTTAAAATATCTAAAGCTGCTTAAAATATTTCGAGTGAAAAA
TGATTTACTAATACTCAAAAAAGAGTTTTGACGTATTATTATTTTAATCA
TTCATTAAAtgacaatattttttcaaaagatttttttacttttttgacaa
aagcttttttcatcctcaacatttttaaaaattgcaatactaatttcatt
tttcgattttatctATAGTTACTGAAAGGATGCAATCAGCAAAGTTGGAA
TGAGTTCTGTCTTTGGAAAAGAACATTGATAAATAACCACACACGTAAGT
AGAAGCTACTACTGGTAACTAGAAGTTTCTCAAATCTAAGATAACAATTC
CTGATTAAGATAAAACCAAAAGAGAAACAAGCTATAAAATCGAAAGCCTC
GTTGTAATCTTAATCATTTGATTTGTTAGCTTGGAAGAATATATGAATAT
GAATCCAGGTATGGAAAAAAGATGACCTTTGTCTTCATACTTCATATTTc
cttaactttttaatttttggtaaaatacatttcacacccctgtgtcacag
accccagccccattggaaaatctggcaaaaatttcgtcccttgtaggaaa
atacccaatttccccactgggaaattgacttataTTTCATCACCACtaga
aattaaatgtttaaaaactgcACTCAAAAACCACCCACACTGGATTTTTT
Agtctttgaacaatagaatttctatccccattgggatttcaataggaatt
ttatCTCAACTTAggaaaggttccaccggggctgtgagacataGGTGTCA
TTTCATCTgctttcttttgtattttagtGTTGGTCGAAAGACGAAAGAAA
ACTAACAACTAGATAACAATTATTGGATCGAgtaaaataaacaacaataa
tgAAAGTTGAACTTTGTTTGTACAATGTATAATAAAACCTATACGAATTT
TTCAGAATAGTATCAATCTATTCTGTCTGGTTATGGACCTGTGAAACGAG
TGGATTGCAATGACGATGAttgattttcataaattactctTACTCTATCA
AAAACATTAGTTTTTTTCGCAATAAGCATTTTATACACTACtaaatatat
ttaattttgggTTTTATAACTATTTTTGATATaacatttatttcaaaatt
attcaaTAGTGTTGTtcttatgtttatttttttttttgctagatTAATAA
GAATTTACCCGTAATACCATTTTACAGAACGAATCAATTTATCAGATTAT
TGACACTAACTTTATGTAAAGGATTCTTTGCTCATGCAAAATATAAAAGG
TAGAATATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071599-exon-scaffold_62-1491911889:453692..453777 | TCONS_00071599-exon-scaffold_62-1491911889:453692..453777 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1510915933:453692..453777 | TCONS_00071599-exon-scaffold_62-1510915933:453692..453777 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1575043694:453692..453777 | TCONS_00071599-exon-scaffold_62-1575043694:453692..453777 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1491911889:455038..456022 | TCONS_00071599-exon-scaffold_62-1491911889:455038..456022 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1510915933:455038..456022 | TCONS_00071599-exon-scaffold_62-1510915933:455038..456022 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1575043694:455038..456022 | TCONS_00071599-exon-scaffold_62-1575043694:455038..456022 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1491911889:456710..456785 | TCONS_00071599-exon-scaffold_62-1491911889:456710..456785 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1510915933:456710..456785 | TCONS_00071599-exon-scaffold_62-1510915933:456710..456785 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1575043694:456710..456785 | TCONS_00071599-exon-scaffold_62-1575043694:456710..456785 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1491911889:457319..457804 | TCONS_00071599-exon-scaffold_62-1491911889:457319..457804 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1510915933:457319..457804 | TCONS_00071599-exon-scaffold_62-1510915933:457319..457804 | Clytia hemisphaerica | exon |
| TCONS_00071599-exon-scaffold_62-1575043694:457319..457804 | TCONS_00071599-exon-scaffold_62-1575043694:457319..457804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:453692..457804 + |
Blast
The following BLAST results are available for this feature:
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