TCONS_00071596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071596
Unique NameTCONS_00071596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071596 ID=TCONS_00071596|Name=TCONS_00071596|organism=Clytia hemisphaerica|type=transcript|length=1905bp
ACGGAAACACTTCTTATAATACATAATCTTCAAGTTTACAATTTGTCAAG
CTTTTAAAACCAGAATTTGAGACGGATAGAACTCCAGTGGTTGTGTAACA
CAAGGAGTGttgataagatttttttattgttttatcatcatcagaAATAG
TAGTTGCATTGTTGTTTTAGATTGGGCTACGCCGTTCTTCTCCTTGATCA
GATACTGAACGATACAGAAAAAAAGAGAAAAAGAATACTTTTACCAAGTA
tcaagatttcaaatttggcatcCCTGTTTTTCATTCGTATGGTCACAGAG
GAGACTGTCAGgTGAAAAATTCAATCAGAAGATTAGATTCTTTTGGCCTT
ATGGATGGTGAATTGATGGAACGCCTCTGGTCATATCTTCGATCATTCTC
AAAGATTACCAAGGAGATGACTCCAGCTCACCGCACGGATTTACTTAGTG
ATGCTCTGCTGCATTTTGGCTCAAAGAAAATGGGAAATATCGgaAAATAT
CTCGTGTTTCTATTTCAAAAAGCAACAAGAACTTTGAATTCTTGCGATTC
AGAAATTAAAACGATTTGCTCTAAACTGCCTGCTCATGTGGATGAAGAAA
TTATCAAATCATGGAAAAAAGAGGAGGATAACGCCGTAAGCCAAAATGGA
AAACTTATACAGAAAACTCCTTCTGATTGGAAGCAAGTCTACTACCTTAA
ACTGAAAGACTTTTACAAAGAATCTGCACTGGTTTTAATGAGCGAAAAAG
TATGCGATGCTGCATCGCATCAACGAAAGGCAAACAGACTGAAACGAAAC
TTGACATCGTTTGAAAAGCTTCATAAAGTGAATACGAGATGGAAAACAAC
AGATCGCGACTTTCGAAGTCAACATATGACATTTTTGCGTGTGAAGTCAA
ACGAAACAGCATCCACACTATATAGCAGATGTTCTGAAAGAATGATGCTC
TTAACATTAAAGAAGCGATATGCAGATGGTTCGGCGATCGCGACGAGATT
GAGCAAACAGATAAATAAAGTATGTAAAGAAATCAAGAACCTGCTTGCCT
CATACAATTCAATGAGATTGGAAATGTCACCAAATTTCAAAACTATAGAT
TACAAAGATGCCCTCAACACAGAGGCTCCAATATATAATGAAGTGAACTT
TGTATCCAACGTCAATGAGGTAAGAAGCTCGTCAATCCCTACGAATGTTG
TGAAAACATTGGTTCAATTCTATTTGAGAAAACAAAGAGCACAGGAGGAG
ATCGTTATAGTTCAAGAAGAAATGAAAGCAACGTTGTCCTATTGGAGAGA
CCAGTTAAATTTTCTTGTTGAATGTGCTTCGCAGCAAACGTCCTTTGGGT
TGAAATATTTACTTCAAGAAAGAATATTCATTGTTAACAGCTTGACAAAG
GAATTAGAACAATTATTTAATTCTGTTACGAACATTGAGCTTCAGACAGA
ATATGTTAATCGTAACTTGGATGTTTGTATCGATGAAATGGACGGTATTT
ACAGTGACAGTGATTGTTCAAGTGAGGACGAAGAAGATTTATGTTCGAGT
GGGAGCGACATTGAGGATTCAGATTTTAATGGTTTATACATTTAGGCTTG
ATATTGCAACTTATGTNGGACGAAGAAGATTTATGTTCGAGTGGGAGCGA
CATTGAGGATTCAGATTTTAATGGTTTATACATTTAGGCTTGATATTGCA
ACTTATGTCCAtgtaaaaagttgtttttaatcCTTAACATTTTTATAGAT
TCATTAACCAAGGGTATCATCTAGAATTAGTCCGTtagattttaaagttt
tagcctcctaattgacaaaaaaattaggttttcttTCAAGCTTAGCTTGT
AATGTCGGAACTCTGGAACTTAATACTTTTTATTTCCTTTCGAATAAAAG
CCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_62:397098..402149+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071596 ID=TCONS_00071596|Name=TCONS_00071596|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at scaffold_62:397098..402149+ (Clytia hemisphaerica)
ACGGAAACACTTCTTATAATACATAATCTTCAAGTTTACAATTTGTCAAG
CTTTTAAAACCAGAATTTGAGACGGATAGAACTCCAGTGGTTGTGTAACA
CAAGGAGTGttgataagatttttttattgttttatcatcatcagaAATAG
TAGTTGCATTGTTGTTTTAGATTGGGCTACGCCGTTCTTCTCCTTGATCA
GATACTGAACGATACAGAAAAAAAGAGGTTGGATGTGCACATCATATATG
ATATTGCATGCGTTTTGAAGTCACATTTGCAGGTAGAAAAttaggaaaac
ttttttttctaatgATCATACctcatttaaaatttcttttttcaaaagag
tGCAAATAACTCTATATAATAACTCTCTAAGACTTTTTGTTTTATGTAAA
TCACTGTAACATTTCTTTGTAGATATTGACTTAGATCACCGACCTACCTC
TCCCATCTAATTTTAGCCTATTACACGTAAGACTGtatgttaatattttt
tacGTTATCTTTAGAAAAAGAATACTTTTACCAAGTAtcaagatttcaaa
tttggcatcCCTGTTTTTCATTCGTATGGTCACAGAGGAGACTGTCAGGT
GATTATTGAATTCTATGATGGTTTTTCTGctttcagaattttgaaaattt
tgcgatTTCCGCGAATTTTGAAcagattcgcgaaaatttattcTCGCAAA
AACACTTTTCAATAAAGTCTACGCTCGACCATAAATTCTCCAACAGCTTG
GAATGTAATTTTGGGATACCTTTTGTGTTGAtggttttgaaaaatctcag
GCTTCAACGCTCTATCTtacaaaaaatagtgaaaatcacaaataaaaaca
aaagtcgacaaattttcttttctcgcttcatttttttgaaagttaatttg
ttatttttaggTGAAAAATTCAATCAGAAGATTAGATTCTTTTGGCCTTA
TGGATGGTGAATTGATGGAACGCCTCTGGTCATATCTTCGATCATTCTCA
AAGATTACCAAGGAGATGACTCCAGCTCACCGCACGGATTTACTTAGTGA
TGCTCTGCTGCATTTTGGCTCAAAGAAAATGGGAAATATCGGTATGATTA
CTTTGAAAAGTTCTATACTAGTGTTACATAATTATGATATTTTTAAGCTG
ATTAATCACTTGGTGTCATCTATTAAAGCTTTGTTTATCACTGGTAACGC
GAAACATTTTTAAATCTTTACTTAGGctttacttttattttcttttagga
AAATATCTCGTGTTTCTATTTCAAAAAGCAACAAGAACTTTGAATTCTTG
CGATTCAGAAATTAAAACGATTTGCTCTAAACTGCCTGGTAAgttataat
tttttgatttagaATAACTTATTCTAGTAAGCATGAAGCTTAGCGAATTG
AGGTCTGCTTGAATAAGTTCTCGTCAAAATCTATATTAGTTCAATTCTTA
AAACAAGCTCTCGCTAAAAGTCATTTCGATATTGGTTTCGGTTGGTTCTA
AAATTcttctttagaaaaacattgtaaatttagaagaatttaaaagaaaa
cagTTCAAAAAGGCCAGTCAAATTTTAACACTTTTTCAACACTATTCTAG
TTAATTTGAAAATTCTATCATGACTGATTCATGATACCTTTTATAAAATT
CCTAAAAGAATTGTTCAAAACATTTAGCTCATGTGGATGAAGAAATTATC
AAATCATGGAAAAAAGAGGAGGATAACGCCGTAAGCCAAAATGGAAAACT
TATACAGAAAAGTTAGTATTTTGCAACGTCATCTTTTTCTCGTTACTGGA
ATGACTAAGTAGAAATCTGTCGAACCAATAAGGTATAAGCCCCGAAGGGG
CCAGAGTGGAATCTGGTGGTAGGATTTGAAGCCAGTTAAATCCTACCAAA
TTATTTTTTTGCCGATCCCCCATATTGAATTCCTGTACTGAAAAAACTTG
GGTCAACCGCTAAATTAATTTTTTGGCAAAATTTCTTCCTTTAAGGTTGA
GTTATGGGGACTTAAATGTATTTAAAAATATTTCGATTTTTGTACGTGCT
GGAGTGCTTCAAAAATGAAGAATAACTCTTTTTTATTATTCTTTAGAAAA
ACTGACCCATTTGATTGACATGACAATTGACATGACAAACGACAAATGTC
TGTAAGTAACAACGACTACGGACAACAAGATAATGACTGTACTCTGCTGA
CGACTTACATTTCTGAATATATATTGAGGTGTTGAGGATTTCTTTTTTTT
TACCGCAGTAGCCATAAATTTATTTGAGACGTACGATACTTGAACACAAA
GACTACTGACTCATAAGACAACTAACAACTTGTAAATTTGTTTTCCTGTT
CTTTTGACCAACTTTTCACTAGCATTGTGGAGTTAATATAGTTTTGAATG
AGTAATTACTGCTTTGTGTATATTTTCAGCTCCTTCTGATTGGAAGCAAG
TCTACTACCTTAAACTGAAAGACTTTTACAAAGAATCTGCACTGGTTTTA
ATGAGCGAAAAAGTATGCGATGCTGCATCGCATCAACGAAAGGCAAACAG
GTAAAACTTGCTTAAATAACGAAGAATATGTTTACCCGTTGGTCTTTACC
CCGCTGAAAGCTGAAAAAAGAAAATGATTGGAAGGCAAGCCAACGAAATG
TGTTGAGCTTTACTCTTTCAGACTTGAATTCAGTTTCAAACTTTAAGGGG
ATAATCAGATGATTTTCGATATTTGGCCTACAGATTCAAGCAATGGCTCT
GAGAGAAACCTCCAAATTTTTTGGCCCAGTTATTTTCCAAAGCTGATATA
AGGGGCTAGGACTGTCATCACGAGTATACTGTTTTAGCCTAATCTCAGAG
TGAGAGTCCTACTATTTCGGCTATTTTCAAAGCGCAATATCTCAGCTTAG
GAAAATGATTGGGTCAAAAAATGGGCCATGGAGTGAGCCTATTGGCCAAA
TATAAAAAATCATGTGATTATCCCTTTAACATTACATAGATTTCTCGAAA
TAAAAGAAATTATTTTCCGAGATTTTTCGATCCAATTGAGTGTAATTATG
TTGTTATTTCATTCATTAGACTGAAACGAAACTTGACATCGTTTGAAAAG
CTTCATAAAGTGAATACGAGATGGAAAACAACAGATCGCGACTTTCGAAG
TCAACATATGACATTTTTGCGTGTGAAGTCAAACGAAACAGCATCCACAC
TATATAGCAGATGTTCTGAAAGAATGATGCTCTTAACATTAAAGAAGCGA
TATGCAGGTATGTTCGATTCTGAAAACACATTTTCATCAATTTACGCCGG
CTACAGATCAGATTAGTAGATTTTACTTGTAGGCCCCACCATGGTTGTGC
TACACAGGGAAAACTTTTGAAATTCGGTCACTTATAATGGCCTGGAGATA
TTCGGTTTCAATTTCAACTAAACACCTAACGTATTTTATCCTGTGCCCCT
TTAAAAGTAGATTTATTAATAAATCTAAATATAATAGAATTCCAGAACTT
TCAGACAAATTATCGAAATCCAATCTCAAAAAAAAAATTGTAAAAGGTAA
ACTCTGACTTCAAAGCAGAGAAGGTTAGAAATAATGGCTGCTCAAACGAT
CTATCAATCAATAAGAGGAAATAATATCAGCAACAAAAAGGACTCAAAAT
TTCTTAAGATATTCAGAAATATCCTCTACGAAAACTTTTTAGTAAATCCA
TCTCCCTAAAAAAATCCAAGAATAAAAAATCCAAGTAGAAATTTTTATTC
CTTACGCTTCTAATTTTCTCTCACTTCAGATGGTTCGGCGATCGCGACGA
GATTGAGCAAACAGATAAATAAAGTATGTAAAGAAATCAAGAACCTGCTT
GCCTCATACAATTCAATGAGATTGGAAATGTCACCAAATTTCAAAACTAT
AGATTACAAAGATGCCCTCAACACAGAGGCTCCAATATATAATGAAGTGA
ACTTTGTATCCAACGTCAATGAGGTTGGTGATATTATATTCCCAAGAAAT
TTCTTTTTTTAATGTTTTTGGTTTTATGATGCGAAGGGTGCAGTGACAAA
ATTAACCGGAAAAAGAAAATTGTTTCACGAAATAGACATCGAGTTTTTAT
TACCTATGAACTCATGCATTGGAAGAAAGGATATGACTCAATTTTCTGTA
AACACGCTAAAGCAAAAGAGAATTGAAAATGTTTATGTGTCTTGTAGAGT
GCAACCAACGATTTATTGCGCTCCAAGTAGAAGCGCCAATTAGGGGTAGC
TCATTGGGTAATTGAAGTTGTATTAAAGTAATAATTGTTTCtactctctt
tctctctctttcTTAGGTAAGAAGCTCGTCAATCCCTACGAATGTTGTGA
AAACATTGGTTCAATTCTATTTGAGAAAACAAAGAGCACAGGAGGAGATC
GTTATAGTTCAAGAAGAAATGAAAGCAACGTTGTCCTATTGGAGAGACCA
GTTAAATTTTCTTGTTGAATGTGCTTCGCAGCAAACGTCCTTTGGGTTGA
AATATTTACTTCAAGAAAGAATATTCATTGTTAACAGCTTGACAAAGGAA
TTAGAACAATTATTTAATTCTGTTACGAACATTGAGCTTCAGACAGAATA
TGTTAATCGTAACTTGGATGTTTGTATCGATGAAATGGACGGTATTTACA
GTGACAGTGATTGTTCAAGTGAGGACGAAGAAGATTTATGTTCGAGTGGG
AGCGACATTGAGGATTCAGATTTTAATGGTTTATACATTTAGGCTTGATA
TTGCAACTTATGTNGGACGAAGAAGATTTATGTTCGAGTGGGAGCGACAT
TGAGGATTCAGATTTTAATGGTTTATACATTTAGGCTTGATATTGCAACT
TATGTCCAtgtaaaaagttgtttttaatcCTTAACATTTTTATAGATTCA
TTAACCAAGGGTATCATCTAGAATTAGTCCGTtagattttaaagttttag
cctcctaattgacaaaaaaattaggttttcttTCAAGCTTAGCTTGTAAT
GTCGGAACTCTGGAACTTAATACTTTTTATTTCCTTTCGAATAAAAGCCC
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044483XLOC_044483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071596-exon-scaffold_62-1491911889:397098..397324TCONS_00071596-exon-scaffold_62-1491911889:397098..397324Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:397098..397324TCONS_00071596-exon-scaffold_62-1510915933:397098..397324Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:397098..397324TCONS_00071596-exon-scaffold_62-1575043694:397098..397324Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:397612..397695TCONS_00071596-exon-scaffold_62-1491911889:397612..397695Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:397612..397695TCONS_00071596-exon-scaffold_62-1510915933:397612..397695Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:397612..397695TCONS_00071596-exon-scaffold_62-1575043694:397612..397695Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:398008..398188TCONS_00071596-exon-scaffold_62-1491911889:398008..398188Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:398008..398188TCONS_00071596-exon-scaffold_62-1510915933:398008..398188Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:398008..398188TCONS_00071596-exon-scaffold_62-1575043694:398008..398188Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:398346..398435TCONS_00071596-exon-scaffold_62-1491911889:398346..398435Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:398346..398435TCONS_00071596-exon-scaffold_62-1510915933:398346..398435Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:398346..398435TCONS_00071596-exon-scaffold_62-1575043694:398346..398435Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:398775..398858TCONS_00071596-exon-scaffold_62-1491911889:398775..398858Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:398775..398858TCONS_00071596-exon-scaffold_62-1510915933:398775..398858Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:398775..398858TCONS_00071596-exon-scaffold_62-1575043694:398775..398858Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:399527..399647TCONS_00071596-exon-scaffold_62-1491911889:399527..399647Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:399527..399647TCONS_00071596-exon-scaffold_62-1510915933:399527..399647Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:399527..399647TCONS_00071596-exon-scaffold_62-1575043694:399527..399647Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:400167..400354TCONS_00071596-exon-scaffold_62-1491911889:400167..400354Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:400167..400354TCONS_00071596-exon-scaffold_62-1510915933:400167..400354Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:400167..400354TCONS_00071596-exon-scaffold_62-1575043694:400167..400354Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:400877..401070TCONS_00071596-exon-scaffold_62-1491911889:400877..401070Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:400877..401070TCONS_00071596-exon-scaffold_62-1510915933:400877..401070Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:400877..401070TCONS_00071596-exon-scaffold_62-1575043694:400877..401070Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1491911889:401414..402149TCONS_00071596-exon-scaffold_62-1491911889:401414..402149Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1510915933:401414..402149TCONS_00071596-exon-scaffold_62-1510915933:401414..402149Clytia hemisphaericaexon
TCONS_00071596-exon-scaffold_62-1575043694:401414..402149TCONS_00071596-exon-scaffold_62-1575043694:401414..402149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:397098..402149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.170087	2.48814e-10	0.0456791	1.92636	3.3024	6.69465	11.6818	5.02505	7.26118	3.45028	2.69169	1.42617	0.433518	0.178996	0.463549	0.221323	0.909728	0.127385	0	0.849166	1.28191	0.46988	2.21226	1.9107	3.76087	0.767393	0	7.47849	4.83899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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