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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071589 ID=TCONS_00071589|Name=TCONS_00071589|organism=Clytia hemisphaerica|type=transcript|length=535bp
AGGAGACTTGCCTTGAGCGACTTCAAAAAAGGGTATACAATGATCCTAAC
TGCaaagCAATCAGTGAGGCTGAGAATGAAGAGAAAAAGCGAAGGAAAGA
GAGGGTGCTATCTAGCCTCAAGCCaccaaaaaagaagaagaaaaagtccC
TTACTTTTGCAGATGAAAATGctGCCAACTGTGGTTTGATCAAAAATTCT
TCTTTGGCTCAAGATAATGGCTCAACAAAATATTCAACTGGAACATGTGT
CTCTCTTTCATCTGGAGACACTGAGACCTCCATTGTCGTCTCTGTTTCAT
CTGGTGATCATCCTAAAACTTCCACCGTTGCCGTATCATCTGGTCACTCT
GCAACTGCAAGTGTTTTCTCTGTTTCATCTGGTGATCGTCCTTCAACTTC
CACCGTTGCCGTATCATCTGGTCACTCTGCAACTGCAAGTGTTCTCTCTG
TTTCATCTGGTGATCGTCCTTCAACTTCAAGTGTTGCCTCTGTATCATCT
GGTCACTCTGAAACTTCAAATGTCGTCTCTGTTTC Run BLAST on NCBI protein sequence of TCONS_00071589-protein >TCONS_00071589-protein ID=TCONS_00071589-protein|Name=TCONS_00071589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
ETCLERLQKRVYNDPNCKAISEAENEEKKRRKERVLSSLKPPKKKKKKSL
TFADENAANCGLIKNSSLAQDNGSTKYSTGTCVSLSSGDTETSIVVSVSS
GDHPKTSTVAVSSGHSATASVFSVSSGDRPSTSTVAVSSGHSATASVLSV
SSGDRPSTSSVASVSSGHSETSNVVSV Run BLAST on NCBI transcript from alignment at scaffold_62:366584..368683+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071589 ID=TCONS_00071589|Name=TCONS_00071589|organism=Clytia hemisphaerica|type=transcript|length=2100bp|location=Sequence derived from alignment at scaffold_62:366584..368683+ (Clytia hemisphaerica)
AGGAGACTTGCCTTGAGCGACTTCAAAAAAGGGTATACAATGATCCTAAC
TGCaaaggtaaattttattttcatcaccATGAAGCTAATGCAAAGTTTAA
CAACTTTTTATCAGGCAATAAAGGAGAATGAGCCGGCTTCACATACTCTT
GAAGAGGTGCATTTGAGTCTCAGTACGCATTCAAGTATTGCTTAAAATGG
ATCATGAGCCAAGCAAGAAAGTATTTAGGATTTTGACCCAGTCCAAGACg
gcaaaattagaaaattagaaagatGGGTTCAAAGAACTTGGCTAAGGCGT
TAACCCCCCTTTCTAGATGAACCTCCCCCTTTTTGAAATCTTCCCCCTTT
TTACAATAAAGTCCTTATAAGCTTCTTTCGTTAAACTCATGtcattttca
atgaatttcttttgctttgtAGCAATCAGTGAGGCTGAGAATGAAGAGAA
AAAGCGAAGGAAAGAGAGGGTGCTATCTAGCCTCAAGCCaccaaaaaaga
agaagaaaaagtccCTTACTTTTGCAGATGAAAATGGTAATCTTTTATTT
AACTCTATAACATCCCTTTTATTTAACAAGTTACCTTTAGGGACGagatt
tttgtgcaattttattttggcaatttattaaaatttctaaatttggtgag
aatttattttggcgaacgTCCCATTTTTTGGTGAATATTTTGGCGGGAAA
AGGgtgaaaaaagggtttttaggagaaatagaggatagtttgaaagaaaa
ttaaatttggcgagaattaattttggcgaatagcCTATAAATCTAGATTt
agcgggaagaaattttggcgaaatttttaggcaattcttcaaaattactt
ctcaccaaaaattttttctcttaaGGTAGTTTAAATTTTCTCTAGACAAG
AcctaaatttctgaaaaaatttggtaatttattgactgtcagcaaatctT
ACTTTAAAGAAATATTCTTTGATCTTCTGAAAGAGTCAGTTTGAAGAGCA
GGACAGGTCCAATAGTGTGAAACTTGGATTTCTTTTTTAGATGTGTCTCG
TTATGTGAAATGAGTAAGATCCCAAAACTTTTCATGGGATCCTTCTCCCC
TCCAGGATAATGGGTGGAAGAATCACGTTTTTAGCCAAGGGGGACTGATT
TTTTACACTTGATGGGGGACAAAAGGAAATGGGGTTTTAAGGAGAATTTC
TTACAAATGTATTTTCCTTTCGTATGAATTTATCACTTCTCATTCATTTT
GAAGTGAATTGATAACTTTGTGAGTCTTTCAGAAGGGGGACCAGGAATCA
AAGAGTGATGGAGGAAGAAAGCCAGATGAGGGGGAGTATTGAACACCAGA
TGGGGACCAAAAATCTGCAGAACACAGTGCTTTTTGTAcctatactctcg
ggtacttaatagttgggggttggaaaaaatctcaaaacttaataagcata
aaaatgttctGGGTGAGAAACTTATGAAAAGGAGGCTAACAGAAGAATCA
GGGCAAAaaaggaactttcaaaaacattttcctaaaaagtgggggtttgg
aataagattgtcctaggtggaaaatttttgaaaaattaattagcgggggg
atgGCTATTAGGGAACCAGAGAACATATGAACTCCAGGGAAAACAAGGTG
AAAATTAAGCTTCAAAAGTTTAGACTTGTTCCATACTGTGCGTGCCTTGT
CATAAAAACATACTCAtcgttgaaactttttttcagctGCCAACTGTGGT
TTGATCAAAAATTCTTCTTTGGCTCAAGATAATGGCTCAACAAAATATTC
AACTGGAACATGTGTCTCTCTTTCATCTGGAGACACTGAGACCTCCATTG
TCGTCTCTGTTTCATCTGGTGATCATCCTAAAACTTCCACCGTTGCCGTA
TCATCTGGTCACTCTGCAACTGCAAGTGTTTTCTCTGTTTCATCTGGTGA
TCGTCCTTCAACTTCCACCGTTGCCGTATCATCTGGTCACTCTGCAACTG
CAAGTGTTCTCTCTGTTTCATCTGGTGATCGTCCTTCAACTTCAAGTGTT
GCCTCTGTATCATCTGGTCACTCTGAAACTTCAAATGTCGTCTCTGTTTC
Coding sequence (CDS) from alignment at scaffold_62:366584..368683+ >TCONS_00071589 ID=TCONS_00071589|Name=TCONS_00071589|organism=Clytia hemisphaerica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_62:366584..368683+ (Clytia hemisphaerica)
GAGACTTGCCTTGAGCGACTTCAAAAAAGGGTATACAATGATCCTAACTG
CaaagCAATCAGTGAGGCTGAGAATGAAGAGAAAAAGCGAAGGAAAGAGA
GGGTGCTATCTAGCCTCAAGCCaccaaaaaagaagaagaaaaagtccCTT
ACTTTTGCAGATGAAAATGctGCCAACTGTGGTTTGATCAAAAATTCTTC
TTTGGCTCAAGATAATGGCTCAACAAAATATTCAACTGGAACATGTGTCT
CTCTTTCATCTGGAGACACTGAGACCTCCATTGTCGTCTCTGTTTCATCT
GGTGATCATCCTAAAACTTCCACCGTTGCCGTATCATCTGGTCACTCTGC
AACTGCAAGTGTTTTCTCTGTTTCATCTGGTGATCGTCCTTCAACTTCCA
CCGTTGCCGTATCATCTGGTCACTCTGCAACTGCAAGTGTTCTCTCTGTT
TCATCTGGTGATCGTCCTTCAACTTCAAGTGTTGCCTCTGTATCATCTGG
TCACTCTGAAACTTCAAATGTCGTCTCTGTTGAGACTTGCCTTGAGCGAC
TTCAAAAAAGGGTATACAATGATCCTAACTGCaaagCAATCAGTGAGGCT
GAGAATGAAGAGAAAAAGCGAAGGAAAGAGAGGGTGCTATCTAGCCTCAA
GCCaccaaaaaagaagaagaaaaagtccCTTACTTTTGCAGATGAAAATG
ctGCCAACTGTGGTTTGATCAAAAATTCTTCTTTGGCTCAAGATAATGGC
TCAACAAAATATTCAACTGGAACATGTGTCTCTCTTTCATCTGGAGACAC
TGAGACCTCCATTGTCGTCTCTGTTTCATCTGGTGATCATCCTAAAACTT
CCACCGTTGCCGTATCATCTGGTCACTCTGCAACTGCAAGTGTTTTCTCT
GTTTCATCTGGTGATCGTCCTTCAACTTCCACCGTTGCCGTATCATCTGG
TCACTCTGCAACTGCAAGTGTTCTCTCTGTTTCATCTGGTGATCGTCCTT
CAACTTCAAGTGTTGCCTCTGTATCATCTGGTCACTCTGAAACTTCAAAT
GTCGTCTCTGTTGAGACTTGCCTTGAGCGACTTCAAAAAAGGGTATACAA
TGATCCTAACTGCaaagCAATCAGTGAGGCTGAGAATGAAGAGAAAAAGC
GAAGGAAAGAGAGGGTGCTATCTAGCCTCAAGCCaccaaaaaagaagaag
aaaaagtccCTTACTTTTGCAGATGAAAATGctGCCAACTGTGGTTTGAT
CAAAAATTCTTCTTTGGCTCAAGATAATGGCTCAACAAAATATTCAACTG
GAACATGTGTCTCTCTTTCATCTGGAGACACTGAGACCTCCATTGTCGTC
TCTGTTTCATCTGGTGATCATCCTAAAACTTCCACCGTTGCCGTATCATC
TGGTCACTCTGCAACTGCAAGTGTTTTCTCTGTTTCATCTGGTGATCGTC
CTTCAACTTCCACCGTTGCCGTATCATCTGGTCACTCTGCAACTGCAAGT
GTTCTCTCTGTTTCATCTGGTGATCGTCCTTCAACTTCAAGTGTTGCCTC
TGTATCATCTGGTCACTCTGAAACTTCAAATGTCGTCTCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071589-exon-scaffold_62-1491911889:366584..366640 | TCONS_00071589-exon-scaffold_62-1491911889:366584..366640 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1510915933:366584..366640 | TCONS_00071589-exon-scaffold_62-1510915933:366584..366640 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1575043694:366584..366640 | TCONS_00071589-exon-scaffold_62-1575043694:366584..366640 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1491911889:367006..367119 | TCONS_00071589-exon-scaffold_62-1491911889:367006..367119 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1510915933:367006..367119 | TCONS_00071589-exon-scaffold_62-1510915933:367006..367119 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1575043694:367006..367119 | TCONS_00071589-exon-scaffold_62-1575043694:367006..367119 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1491911889:368320..368683 | TCONS_00071589-exon-scaffold_62-1491911889:368320..368683 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1510915933:368320..368683 | TCONS_00071589-exon-scaffold_62-1510915933:368320..368683 | Clytia hemisphaerica | exon |
| TCONS_00071589-exon-scaffold_62-1575043694:368320..368683 | TCONS_00071589-exon-scaffold_62-1575043694:368320..368683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:366584..368683 + |
Blast
The following BLAST results are available for this feature:
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