TCONS_00071588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071588
Unique NameTCONS_00071588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071588 ID=TCONS_00071588|Name=TCONS_00071588|organism=Clytia hemisphaerica|type=transcript|length=4233bp
TAAAAGGAGCAATCAGAAAGACTCTGCAGAAAACATAACACCAAACAATT
GAACGTGAAAGATTTCTCATaaagtttttaatgatttgttAACATTTTAT
TAGTGGGTAGAAAGAAGTTTATTCCACAGAGAGTTTATAGATATATTTCG
ACCTGTAAAAAGggtgaaataaaaaatccagcaaCAGTTTTCAAAGTCTT
AGTATAAAGATGTGGTTACAGATTGCTTTAGCTGCTATCATTGTCTCGTT
CACTGCATTCTATTTGTACATGAAACATAGATTGTCTTACTGGAAACGCC
GGGGAATACCGGAAGATAAAGGACATTTCCCCTTCGGTAGCAAACATGCT
TGGGATTTTGTGCAAGGGAAAATGTCATTCACTCAAATGACAAATTTTGC
ATACGAAACACACCCTGGTGAAAAGGTCGTTGGAACATATGATATGTTTG
GAAGTCCTGGTCTGGTTATTCGTGATCCTGATATTGCTAAATTAATCTTG
GTCaaagattttgataatttcatGGAACGTAAACCAATTCATTACAACAT
GTATGACTCTAACAGTAAAAATAACCGATATTTCCCATACATGTTGACAG
AGCTTCGTGGCCAGCAATGGAAGAATGTAAGATCGTCATTAACACCTGTT
TTTACTAGCGGCAAACTGAAGAATATGATTCCACTCATACATAAAGTTGC
TGATAACTGTGAAACATACTTAGACAAGAATATTGGTGTTGAATTTGAGG
CGAAGGAGTTGTTAAAAGGGTACGCTTTGGATATAATCATTTCAACTGGA
TTTGGTTACGAGAATGACACTTTAAATAATCCAGAAAATATCTTCAAGAA
GCATGCTGATGTGATGATTGGGAAGACTTTCAGTTGGAAATTGATAGCTA
CAATTCTTCTGTTCATGATCTGCCCAAGGCTTCTCCGCTGGTTGGATTGG
GCCATGTTTGACAAAAACACAGTAGATTTCTTTGCAGCACTCATTGTTAA
AACTATCAAGGAGCGCAAAGAGAGTGGACAGAGAAGAAACGATTTGATAG
ATGTCTGTGTTGATATTTTGGAGAAAGAACGAAAAGAGAATGAGAAAAGT
GTAGAAGATGAAGAAGGGGCGAAAAGAAGAAATGacgaaatggagaaaat
aattATCGCCAATTCATTGATCATGTTTCTTGCAGGATTTGATACAGTCT
CAAACGCTTCGTCACTGATGATGTATTTCTTGGCAAAGCATCAAGATTGC
CAAGAAAGACTCTACCAAGAAGTTCAAGAAGCTATCGAATCCACCGGATC
TACAAACTTCGATTACGCTACCATCATGAATATGCCTTATAtggaaaaat
tcttccaagaaacCCTAAGAATGTANTCTACCATTATGAATATGCCTTAT
AtggaaaaattcttccaagaaacCTTCAGAATGTATCCTTTAACGCATTT
AGAAAGGTGCTCCAAGGAAGAATATAAGATCCCTGACACTGATATAGTGA
TCCCAAAAGGTATTTTCGTTCGATATGCGGCAACTGCTGTGGTGAAAGAT
GAGAAATATTACCCCAATCCTGAAGTATTCGACCCTGAGAATTACAGTGC
TGAAAAGAAAGTTGACAGACACCCGTTTGTCACTGGTGCCTTTGGACATG
GACCGAGGAATTGTATTGCTCAGCGATTCGCGACAATGGAAGTCAAAATT
GTGATTGCACGGTTGTTGAGCAAATATAAGATTGTACCATGCTCAAAAAC
TGTGGATGAACTGATTCCAGATCCAAGTTCAAGAAGTGGGCAACCGAAAG
GGGATATTTGGGTTACTGTTGAGAAAAGGTGAACAAAACAGTTGAAAGAT
TTCATGAAAACCATAGAGTATCAGTCAATATGAACCTCGTACAAACAGAT
ATacttatttcaactttttttttattataaaaccagacaatttttttaaa
tataaatttctaacaaaatttcaaaaattattttgtttttataaaaatgc
cTTGAATGATATATGACAGATTTTACttaatcgaccgccggaggcggttt
ctttcatagtggtacgctaatctcgttttgccttggctcgttactttgtc
taccatttactttcggttttttttacTAGATTACCCAGGTGTTTCTCTTT
TTTTTCTatgaatgtcttttattcggaatcgaataatcgagacatgaaaa
atggctatattgtaattattttcaatgaataatctaaaatgtactggaga
tgataTGTAGGCGTtgataatgtgcgcgcgctctttcgcgagggtgagat
gcgtgatggaaggcggtcgtttcagtgtggtttacatccacactgtgacc
tagtatatAAACATTTATTGTTATAAATAAGACCTAGTTTTAGCTGATTG
ATATGTGTACTTGCGACACTGAGAACCGTGTCTAGCATTAAAAGAATTCT
ATATTTTTGCCTGTTATGTTACTAACTAATAATGGTAGCAAAGCTGTGGT
TAGCCGACGGGTTGTCTTGATATTATAAATACATTTTTCTGTTTacagtt
ttagaaaaattttgctGAGAGCGGTATAATAAATTCAAttggaaaatatt
aaaaaatcaatCCCCAATGAATTTTATGAgttttaaaacacccctgtctc
acagcccctgtGCATCAATTTTTTTCCCGCAGTGGGATAAACATTTCTAT
CGTAATTTCATAATTCCCATTCAgtgaggatggttttggagaacaatatt
tttgattgaatttcgaAATGGGAGGtggaatcaaagtcaattttcctatg
gggctgaaattgttgGATATTTTTCTCCGCTCGGAATGAAATTTTGATCC
GATTTCAAGTTGGTAGCCCAACCGggtcaatgagacaggggtattgtAAA
TGATAGAATATCATACCCAGCTGGTAAATAAAACCCCCTCATTAATAGAT
Accatacccagctggcacacaacattggttcaacgttcatctaacgttac
atGGACGTTAACgtcaacgttgaaacaacgttgagtACCAGCTGGGTATG
GGATCTATTAATGAAGTTGTTTTATATCATTATCTTGATATAATAATTTT
CACTGAGTCACTGTGACAGGAGTGAGATATCAATTTTTTATCGtcgaaaa
attctttgaaaaaagaaacaaaacaaactatgcagcaaacataaaattat
aattcgaatcttttcaaacgttcaaacaaaaattttctaatttaattGTT
TATTAGCTAGTGCTCAAAATGAGCTTTGTATAATTTGCCCCAGCAtaaat
tacaaatatttttaaaattttgatattttgcttgaaatataATTTACAAA
CTTATCAACATAGATCAAAATTGAGCAACCTTATCATACTTCTCATATCA
CCATGCACCTTTTATTGTTATGTGCATGTCTGGTAATTGTGAATTGCAGA
TTCATTCCCCACAATGCTGTTCCAAAGACCGGAATGAAACGCCAGCCGCT
AAACCATATGCTACCAAACGGTCAAAAAGTAGCCTCGAGTGAACCAAAGA
CAGAGGAAGAGAAGGTGAAAGAGTTAAAAGATAAGCTAGTCCAAGAGAAA
TTAGCGGATCTAGCGAAAGCACAGGCGGAACAGAAAGAAGCTGCCACAGC
TGTCACTAACGAAGATCAAAAAAAGAAGCAGGAGAGTGATGAggaaaaat
atgtcaaaatggAAATGGGTTACCACGTACCAGGTACCATCGTTCATCAA
GGTACTTTTGAAGTTGACCCTAACACCATGCCCGGTTTTGGTGGAGATAT
GCCCGCTTATGGAGGTGGATACCCCTATGCTGGAGCATACCCTCAGCAAG
GTATGGGATACAATACTGGATACCCTGGGTACGGTAGTTATGGTATGTCT
CAATCATATGGTAATCATTTTGGCAGCACATCCCCGTCGGCCATCTAGGA
CAGTCCCCCCTCTCGGAGAAAAGAAACTATTTGCAAGTACTCACCAAACG
GGAATAAAAAGATTTCGAAATACCATATATCCTGGCAAAAGATAAATGCA
ATTAAACAAATTTGAAACAAGATAAACCCAGGTAGAACTTACTGTAATTC
ATAATTAGATGTCAGTTTTTATGTAAATATCATTTTAGATAGAATTATAA
TCAAAttaattatattttgaaaatttggcaaaagtaTGAATGAATTTGAT
CAATCTACATGCGTAAAATGTACTATGAAGATT
Run BLAST on NCBI

protein sequence of TCONS_00071588-protein

>TCONS_00071588-protein ID=TCONS_00071588-protein|Name=TCONS_00071588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
MWLQIALAAIIVSFTAFYLYMKHRLSYWKRRGIPEDKGHFPFGSKHAWDF
VQGKMSFTQMTNFAYETHPGEKVVGTYDMFGSPGLVIRDPDIAKLILVKD
FDNFMERKPIHYNMYDSNSKNNRYFPYMLTELRGQQWKNVRSSLTPVFTS
GKLKNMIPLIHKVADNCETYLDKNIGVEFEAKELLKGYALDIIISTGFGY
ENDTLNNPENIFKKHADVMIGKTFSWKLIATILLFMICPRLLRWLDWAMF
DKNTVDFFAALIVKTIKERKESGQRRNDLIDVCVDILEKERKENEKSVED
EEGAKRRNDEMEKIIIANSLIMFLAGFDTVSNASSLMMYFLAKHQDCQER
LYQEVQEAIESTGSTNFDYATIMNMPYMEKFFQETLRMXSTIMNMPYMEK
FFQETFRMYPLTHLERCSKEEYKIPDTDIVIPKGIFVRYAATAVVKDEKY
YPNPEVFDPENYSAEKKVDRHPFVTGAFGHGPRNCIAQRFATMEVKIVIA
RLLSKYKIVPCSKTVDELIPDPSSRSGQPKGDIWVTVEKR
Run BLAST on NCBI

transcript from alignment at scaffold_62:314862..322508+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071588 ID=TCONS_00071588|Name=TCONS_00071588|organism=Clytia hemisphaerica|type=transcript|length=7647bp|location=Sequence derived from alignment at scaffold_62:314862..322508+ (Clytia hemisphaerica)
TAAAAGGAGCAATCAGAAAGACTCTGCAGAAAACATAACACCAAACAATT
GAACGTGAAAGATTTCTCATaaagtttttaatgatttgttAACATTTTAT
TAGTGGGTAGAAAGAAGTTTATTCCACAGAGAGTTTATAGATATATTTCG
ACCTGTAAAAAGggtgaaataaaaaatccagcaaCAGTTTTCAAAGTCTT
AGTATAAAGATGTGGTTACAGATTGCTTTAGCTGCTATCATTGTCTCGTT
CACTGCATTCTATTTGTACATGAAACATAGATTGTCTTACTGGAAACGCC
GGGGAATACCGGAAGATAAAGGACATTTCCCCTTCGGTAGCAAACATGCT
TGGGATTTTGTGCAAGGGAAAATGTCATTCACTCAAATGACAAATTTTGC
ATACGAAACACACCCTGGTGAAAAGGTCGTTGGAACATATGATATGTTTG
GAAGTCCTGGTCTGGTTATTCGTGATCCTGATATTGCTAAATTAATCTTG
GTCaaagattttgataatttcatGGAACGTAAACCAATTCATTACAACAT
GTATGACTCTAACAGTAAAAATAACCGATATTTCCCATACATGTTGACAG
AGCTTCGTGGCCAGCAATGGAAGAATGTAAGATCGTCATTAACACCTGTT
TTTACTAGCGGCAAACTGAAGAATATGATTCCACTCATACATAAAGTTGC
TGATAACTGTGAAACATACTTAGACAAGAATATTGGTGTTGAATTTGAGG
CGAAGGAGTTGTTAAAAGGGTACGCTTTGGATATAATCATTTCAACTGGA
TTTGGTTACGAGAATGACACTTTAAATAATCCAGAAAATATCTTCAAGAA
GCATGCTGATGTGATGATTGGGAAGACTTTCAGTTGGAAATTGATAGCTA
CAATTCTTCTGTTCATGATCTGCCCAAGGCTTCTCCGCTGGTTGGATTGG
GCCATGTTTGACAAAAACACAGTAGATTTCTTTGCAGCACTCATTGTTAA
AACTATCAAGGTAAGATTTTTCTTACGCGATTACTTTTAACAGTCGGTCC
ATAGGTGTAGATACCTTGCAAAATCTATGAacgagagcggtttttacgac
actgtaaatattgtctttgttttatcaaaagataatgaatatgtcataaa
cgtctgcactccctcataaattttgcagggtatctcgctacgcctatgtc
AGTCTATCTTAATTGCACTTATCATGTATTTGACTCTAAATTTAGAAGTG
AGACTTTTAGATTCTGAATTTTTACACCAATACACCATCACTTGATTCGT
TTAACGTGCGCATGCGTATTTTGTCGATTTCCACCTTTTGATCTCGagga
ggtaaacaaacctgtCTTTgcctagactggagtcgtttataatgcgtgta
atacagtagtaaaggcgttatatgataatacgataattgttacgggataa
tattagtttgtataaacgactggaagaatccggtgttccggccttataga
atccagaatccccggctagctacgcagaaacttgcgtagcgagaaaacaa
agggtttttttctgaaaacaaaagaaagcttTTTTTGGACGGGGGTGCTT
CCGTAAGAATTTGGTGCGCGAAAGGTAAggagaaattaatttttgatcaa
gcaacaacaaactctcaaaacaaaatgaaagacgaaaaaaaaaaagtttt
aacacACAACAAATcaacacacatttttttttcaagaaaagttttttttg
agcggggaaaaaaattataattgcaatattgacatgacattcttttgttt
ggagttagtttAAAACAAAcgagaaaaatttttcgagaGAGAAAATTGTT
GTGTGTTCTGATTTCTCCTTTTATGTGTTTCGACCAATGGTGTGCGTCTC
CATTGTtttttctaaaccaatcaaatcgatttacgaaatcaaaacaaacc
gtTTTTTTCCGAACAAGCCCCCTAgattttcaaagcttttttcacgTTCT
AATTGAACAAAGTCTTTATTTtggctattcatgatattttaCCTACCTGA
AAACTTCTTTTTACAATCACGgatcaatcaaaataaaaagctAGAAACTG
AAAATCTGCTTTATATGGCATTTTGATACCTTAAacacttttataagaaa
atctacAGTTTTTCAAGCTAGAGACAATTTAGAGTCCGCAAAACCTTAAC
ATGTCCctaacttattcttaatatttcgaaTATCGAAGCCAAatgtttct
tttaaaagaacggTTAAAAGTTATGCAAAGAGGCATACGTCAAAAAGACA
TCACCTTCACTTAGACTATCAGAAAGGGCTGCCAGCttcaaatgaaatta
ctttgaATTCTCTTTCAGGAGCGCAAAGAGAGTGGACAGAGAAGAAACGA
TTTGATAGATGTCTGTGTTGATATTTTGGAGAAAGAACGAAAAGAGAATG
AGAAAAGTGTAGAAGATGAAGAAGGGGCGAAAAGAAGAAATGacgaaatg
gagaaaataattATCGCCAATTCATTGATCATGTTTCTTGCAGGTAACCA
GCgaattatttcatttatttaagACTGCAATAAGTTTCCACAAGTGGTTG
TAGGAGATTAATTTACActcccctgtgtcacagactcgctggaaaatttg
acaaaaataatttcGTTTGCGCtgggaaaataccctagaatttcagcccc
actggaataTTGACGTTTGATTTCATCCCCTTTCGAGTATCAAtgcttca
aaaaaattgtacCCCACTGGATATTTTTAACCTTGGATCAATATATTATC
TCTCCCCAAAAAGGTTTCACTGGGGCTCTGGGATAGGGATGTCTTTGTAT
AGCTCAATTAATTCTTTTGGTTATCATTTACAAATAATTTCATCATTTCA
TTCAATAGGATTTGATACAGTCTCAAACGCTTCGTCACTGATGATGTATT
TCTTGGCAAAGCATCAAGATTGCCAAGAAAGACTCTACCAAGAAGTTCAA
GAAGCTATCGAATCCACCGGATCTACAAACTTCGATTACGCTACCATCAT
GAATATGCCTTATAtggaaaaattcttccaagaaacCCTAAGAATGTANT
CTACCATTATGAATATGCCTTATAtggaaaaattcttccaagaaacCTTC
AGAATGTATCCTTTAACGCATTTAGAAAGGTGCTCCAAGGAAGAATATAA
GATCCCTGACACTGATATAGTGATCCCAAAAGGTATTTTCGTTCGATATG
CGGCAACTGCTGTGGTGAAAGATGAGAAATATTACCCCAATCCTGAAGTA
TTCGACCCTGAGAATTACAGTGCTGAAAAGAAAGTTGACAGACACCCGTT
TGTCACTGGTGCCTTTGGACATGGACCGAGGAATTGTATTGCTCAGCGAT
TCGCGACAATGGAAGTCAAAATTGTGATTGCACGGTTGTTGAGCAAATAT
AAGATTGTACCATGCTCAAAAACTGTGGATGAACTGATTCCAGATCCAAG
TTCAAGAAGTGGGCAACCGAAAGGGGATATTTGGGTTACTGTTGAGAAAA
GGTGAACAAAACAGTTGAAAGATTTCATGAAAACCATAGAGTATCAGTCA
ATATGAACCTCGTACAAACAGATATacttatttcaactttttttttatta
taaaaccagacaatttttttaaatataaatttctaacaaaatttcaaaaa
ttattttgtttttataaaaatgccTTGAATGATATATGACAGATTTTACt
taatcgaccgccggaggcggtttctttcatagtggtacgctaatctcgtt
ttgccttggctcgttactttgtctaccatttactttcggttttttttacT
AGATTACCCAGGTGTTTCTCTTTTTTTTCTatgaatgtcttttattcgga
atcgaataatcgagacatgaaaaatggctatattgtaattattttcaatg
aataatctaaaatgtactggagatgataTGTAGGCGTtgataatgtgcgc
gcgctctttcgcgagggtgagatgcgtgatggaaggcggtcgtttcagtg
tggtttacatccacactgtgacctagtatatAAACATTTATTGTTATAAA
TAAGACCTAGTTTTAGCTGATTGATATGTGTACTTGCGACACTGAGAACC
GTGTCTAGCATTAAAAGAATTCTATATTTTTGCCTGTTATGTTACTAACT
AATAATGGTAGCAAAGCTGTGGTTAGCCGACGGGTTGTCTTGATATTATA
AATACATTTTTCTGTTTacagttttagaaaaattttgctGAGAGCGGTAT
AATAAATTCAAttggaaaatattaaaaaatcaatCCCCAATGAATTTTAT
GAgttttaaaacacccctgtctcacagcccctgtGCATCAATTTTTTTCC
CGCAGTGGGATAAACATTTCTATCGTAATTTCATAATTCCCATTCAgtga
ggatggttttggagaacaatatttttgattgaatttcgaAATGGGAGGtg
gaatcaaagtcaattttcctatggggctgaaattgttgGATATTTTTCTC
CGCTCGGAATGAAATTTTGATCCGATTTCAAGTTGGTAGCCCAACCGggt
caatgagacaggggtattgtAAATGATAGAATATCATACCCAGCTGGTAA
ATAAAACCCCCTCATTAATAGATAccatacccagctggcacacaacattg
gttcaacgttcatctaacgttacatGGACGTTAACgtcaacgttgaaaca
acgttgagtACCAGCTGGGTATGGGATCTATTAATGAAGTTGTTTTATAT
CATTATCTTGATATAATAATTTTCACTGAGTCACTGTGACAGGAGTGAGA
TATCAATTTTTTATCGtcgaaaaattctttgaaaaaagaaacaaaacaaa
ctatgcagcaaacataaaattataattcgaatcttttcaaacgttcaaac
aaaaattttctaatttaattGTTTATTAGCTAGTGCTCAAAATGAGCTTT
GTATAATTTGCCCCAGCAtaaattacaaatatttttaaaattttgatatt
ttgcttgaaatataATTTACAAACTTATCAACATAGATCAAAATTGGTAA
GTCACTTATCCTTAACTAAAATTATagacgttttttttttgtaaaatatt
tttcaagccttcgaatgttcttaataattcgtgttttaagcctaaaaatg
ttctttacttgtttttaatgttttggtCAACaaagcattatgttcttata
tagtttgttttaaaaaaaacatgtaagtcATGATAGAtttcgctttaagt
gtgcactccTTTTTGCTACCATATAGAAACCATGCCAGCGTGATCACTCT
CATATCATTGGGAACGGTTTCCACATAATCACAAGAAAGAATGAACACTT
AAAACGATTGAACTATAGTGCTGAGCATTGGATACCTTATCggctaaaac
ttaattttggcTTGATGACTAAAACTAGgcccgactaaaatttgggccga
ctcaAAACTTGGTGACTAAAactagggccgactaaaattagggccgactc
aaaacttggtgactaaaatttgggccgactaaaaatttagaaatagcCAA
AACTTAGTTATTAATCAGCCCTTAGTGACtgaattttgacgaggtgacta
aaattagggccgactaataattaaggccgactaagttttggccgataagg
tacaagtttttaataataacaaactatataagaacatatggccttgtttg
tcaaaatattaagaaattaCTAAGATCATTTCACGGCTCTATGGGCTTTA
AAACCAGAcaattcttaggaaaattgtacaaaattactcacaaaaaggta
aaatttcaaggacatttttaggcttaaaactcaaaagataagaacatccg
aaggcttcagaaatgttagatgtttaaaaaaaaatcgtgtCAACGTCACA
ATTGGACGTCCCGTATTCTCGTAAAACATGTATTGACTCTTTCCTTTTTA
GAGCAACCTTATCATACTTCTCATATCACCATGCACCTTTTATTGTTATG
TGCATGTCTGGTAATTGTGAATTGCAGATTCATTCCCCACAATGCTGTTC
CAAAGACCGGAATGAAACGCCAGCCGCTAAACCATATGCTACCAAACGGT
CAAAAAGTAGCCTCGAGTGAACCAAAGACAGAGGAAGAGAAGGTGAAAGA
GTTAAAAGATAAGCTAGTCCAAGAGAAATTAGCGGATCTAGCGAAAGCAC
AGGCGGAACAGAAAGAAGCTGCCACAGCTGTCACTAACGAAGATCAAAAA
AAGAAGCAGGAGAGTGATGAggaaaaatatgtcaaaatggAAATGGGTTA
CCACGTACCAGGTACCATCGTTCATCAAGGTACTTTTGAAGTTGACCCTA
ACACCATGCCCGGTTTTGGTGGAGATATGCCCGCTTATGGAGGTGGATAC
CCCTATGCTGGAGCATACCCTCAGCAAGGTATGGGATACAATACTGGATA
CCCTGGGTACGGTAGTTATGGTATGTCTCAATCATATGGTAATCATTTTG
GGTAAATTTTGTTAAGCTcacgtttttatataagaacatgcaaAAGTTTT
TGAGCATTCGTGAGAATTTGATTTCTAACCCTAAGGttatataaaatgtt
tttattttcactattttgtgagtatttttgtccatttgtCTAAGAAATCG
GGTCTTTTATTTAGAGCCTGCCAAGCCTTACTGGCTCTTAATGTTTTGGT
CCAAAGCCTTTCGATCTTATAtagttttgttcttataaaaattgcGTGAT
AGGCATACTTTATTTTACTAGATAGGCatattttattatatagttttgtt
cttataaaaattgcGTGATAGGCATACTTTATTTTACTAGATAggcatat
tttatttttgctaaTATAGTATTTTACTAACCACAATACGACCTTAGTTA
TTTTCTATTATCAATTTAAAACGTGATAGATCTAGTTCAATTTGCGACAC
TGTATTAAAGCGATAATGTGTTATGACTTATCTTAAGAACATTCCAAATA
GAAGAAATGCCCGGGAGGGTGGCACCTATGCAAAAtcgggtacggggacg
tgccgctggtcagggtcacttttttaggCGCTgaaagatatctgacaggg
tcccaattCTACTAATTTTTAAGTTGTTTATCTGACAGGGTAAGCTTTTG
GTTATATTtaggacaattttcagggtagaaattgggaagtttttcaattt
ttgctcaCTTTCATTTAAATGGgaagaaaaaagttcaaatttaccAAGGA
TTCATATCTGGCAGAGGCTATTCTTTTCAAACTTCAGCAGCACATCCCCG
TCGGCCATCTAGGACAGTCCCCCCTCTCGGAGAAAAGAAACTATTTGCAA
GTACTCACCAAACGGGAATAAAAAGATTTCGAAATACCATATATCCTGGC
AAAAGATAAATGCAATTAAACAAATTTGAAACAAGATAAACCCAGGTAGA
ACTTACTGTAATTCATAATTAGATGTCAGTTTTTATGTAAATATCATTTT
AGATAGAATTATAATCAAAttaattatattttgaaaatttggcaaaagta
TGAATGAATTTGATCAATCTACATGCGTAAAATGTACTATGAAGATT

Coding sequence (CDS) from alignment at scaffold_62:314862..322508+

>TCONS_00071588 ID=TCONS_00071588|Name=TCONS_00071588|organism=Clytia hemisphaerica|type=CDS|length=4869bp|location=Sequence derived from alignment at scaffold_62:314862..322508+ (Clytia hemisphaerica)
ATGTGGTTACAGATTGCTTTAGCTGCTATCATTGTCTCGTTCACTGCATT
CTATTTGTACATGAAACATAGATTGTCTTACTGGAAACGCCGGGGAATAC
CGGAAGATAAAGGACATTTCCCCTTCGGTAGCAAACATGCTTGGGATTTT
GTGCAAGGGAAAATGTCATTCACTCAAATGACAAATTTTGCATACGAAAC
ACACCCTGGTGAAAAGGTCGTTGGAACATATGATATGTTTGGAAGTCCTG
GTCTGGTTATTCGTGATCCTGATATTGCTAAATTAATCTTGGTCaaagat
tttgataatttcatGGAACGTAAACCAATTCATTACAACATGTATGACTC
TAACAGTAAAAATAACCGATATTTCCCATACATGTTGACAGAGCTTCGTG
GCCAGCAATGGAAGAATGTAAGATCGTCATTAACACCTGTTTTTACTAGC
GGCAAACTGAAGAATATGATTCCACTCATACATAAAGTTGCTGATAACTG
TGAAACATACTTAGACAAGAATATTGGTGTTGAATTTGAGGCGAAGGAGT
TGTTAAAAGGGTACGCTTTGGATATAATCATTTCAACTGGATTTGGTTAC
GAGAATGACACTTTAAATAATCCAGAAAATATCTTCAAGAAGCATGCTGA
TGTGATGATTGGGAAGACTTTCAGTTGGAAATTGATAGCTACAATTCTTC
TGTTCATGATCTGCCCAAGGCTTCTCCGCTGGTTGGATTGGGCCATGTTT
GACAAAAACACAGTAGATTTCTTTGCAGCACTCATTGTTAAAACTATCAA
GGAGCGCAAAGAGAGTGGACAGAGAAGAAACGATTTGATAGATGTCTGTG
TTGATATTTTGGAGAAAGAACGAAAAGAGAATGAGAAAAGTGTAGAAGAT
GAAGAAGGGGCGAAAAGAAGAAATGacgaaatggagaaaataattATCGC
CAATTCATTGATCATGTTTCTTGCAGGATTTGATACAGTCTCAAACGCTT
CGTCACTGATGATGTATTTCTTGGCAAAGCATCAAGATTGCCAAGAAAGA
CTCTACCAAGAAGTTCAAGAAGCTATCGAATCCACCGGATCTACAAACTT
CGATTACGCTACCATCATGAATATGCCTTATAtggaaaaattcttccaag
aaacCCTAAGAATGTANTCTACCATTATGAATATGCCTTATAtggaaaaa
ttcttccaagaaacCTTCAGAATGTATCCTTTAACGCATTTAGAAAGGTG
CTCCAAGGAAGAATATAAGATCCCTGACACTGATATAGTGATCCCAAAAG
GTATTTTCGTTCGATATGCGGCAACTGCTGTGGTGAAAGATGAGAAATAT
TACCCCAATCCTGAAGTATTCGACCCTGAGAATTACAGTGCTGAAAAGAA
AGTTGACAGACACCCGTTTGTCACTGGTGCCTTTGGACATGGACCGAGGA
ATTGTATTGCTCAGCGATTCGCGACAATGGAAGTCAAAATTGTGATTGCA
CGGTTGTTGAGCAAATATAAGATTGTACCATGCTCAAAAACTGTGGATGA
ACTGATTCCAGATCCAAGTTCAAGAAGTGGGCAACCGAAAGGGGATATTT
GGGTTACTGTTGAGAAAAGGTGAATGTGGTTACAGATTGCTTTAGCTGCT
ATCATTGTCTCGTTCACTGCATTCTATTTGTACATGAAACATAGATTGTC
TTACTGGAAACGCCGGGGAATACCGGAAGATAAAGGACATTTCCCCTTCG
GTAGCAAACATGCTTGGGATTTTGTGCAAGGGAAAATGTCATTCACTCAA
ATGACAAATTTTGCATACGAAACACACCCTGGTGAAAAGGTCGTTGGAAC
ATATGATATGTTTGGAAGTCCTGGTCTGGTTATTCGTGATCCTGATATTG
CTAAATTAATCTTGGTCaaagattttgataatttcatGGAACGTAAACCA
ATTCATTACAACATGTATGACTCTAACAGTAAAAATAACCGATATTTCCC
ATACATGTTGACAGAGCTTCGTGGCCAGCAATGGAAGAATGTAAGATCGT
CATTAACACCTGTTTTTACTAGCGGCAAACTGAAGAATATGATTCCACTC
ATACATAAAGTTGCTGATAACTGTGAAACATACTTAGACAAGAATATTGG
TGTTGAATTTGAGGCGAAGGAGTTGTTAAAAGGGTACGCTTTGGATATAA
TCATTTCAACTGGATTTGGTTACGAGAATGACACTTTAAATAATCCAGAA
AATATCTTCAAGAAGCATGCTGATGTGATGATTGGGAAGACTTTCAGTTG
GAAATTGATAGCTACAATTCTTCTGTTCATGATCTGCCCAAGGCTTCTCC
GCTGGTTGGATTGGGCCATGTTTGACAAAAACACAGTAGATTTCTTTGCA
GCACTCATTGTTAAAACTATCAAGGAGCGCAAAGAGAGTGGACAGAGAAG
AAACGATTTGATAGATGTCTGTGTTGATATTTTGGAGAAAGAACGAAAAG
AGAATGAGAAAAGTGTAGAAGATGAAGAAGGGGCGAAAAGAAGAAATGac
gaaatggagaaaataattATCGCCAATTCATTGATCATGTTTCTTGCAGG
ATTTGATACAGTCTCAAACGCTTCGTCACTGATGATGTATTTCTTGGCAA
AGCATCAAGATTGCCAAGAAAGACTCTACCAAGAAGTTCAAGAAGCTATC
GAATCCACCGGATCTACAAACTTCGATTACGCTACCATCATGAATATGCC
TTATAtggaaaaattcttccaagaaacCCTAAGAATGTANTCTACCATTA
TGAATATGCCTTATAtggaaaaattcttccaagaaacCTTCAGAATGTAT
CCTTTAACGCATTTAGAAAGGTGCTCCAAGGAAGAATATAAGATCCCTGA
CACTGATATAGTGATCCCAAAAGGTATTTTCGTTCGATATGCGGCAACTG
CTGTGGTGAAAGATGAGAAATATTACCCCAATCCTGAAGTATTCGACCCT
GAGAATTACAGTGCTGAAAAGAAAGTTGACAGACACCCGTTTGTCACTGG
TGCCTTTGGACATGGACCGAGGAATTGTATTGCTCAGCGATTCGCGACAA
TGGAAGTCAAAATTGTGATTGCACGGTTGTTGAGCAAATATAAGATTGTA
CCATGCTCAAAAACTGTGGATGAACTGATTCCAGATCCAAGTTCAAGAAG
TGGGCAACCGAAAGGGGATATTTGGGTTACTGTTGAGAAAAGGTGAATGT
GGTTACAGATTGCTTTAGCTGCTATCATTGTCTCGTTCACTGCATTCTAT
TTGTACATGAAACATAGATTGTCTTACTGGAAACGCCGGGGAATACCGGA
AGATAAAGGACATTTCCCCTTCGGTAGCAAACATGCTTGGGATTTTGTGC
AAGGGAAAATGTCATTCACTCAAATGACAAATTTTGCATACGAAACACAC
CCTGGTGAAAAGGTCGTTGGAACATATGATATGTTTGGAAGTCCTGGTCT
GGTTATTCGTGATCCTGATATTGCTAAATTAATCTTGGTCaaagattttg
ataatttcatGGAACGTAAACCAATTCATTACAACATGTATGACTCTAAC
AGTAAAAATAACCGATATTTCCCATACATGTTGACAGAGCTTCGTGGCCA
GCAATGGAAGAATGTAAGATCGTCATTAACACCTGTTTTTACTAGCGGCA
AACTGAAGAATATGATTCCACTCATACATAAAGTTGCTGATAACTGTGAA
ACATACTTAGACAAGAATATTGGTGTTGAATTTGAGGCGAAGGAGTTGTT
AAAAGGGTACGCTTTGGATATAATCATTTCAACTGGATTTGGTTACGAGA
ATGACACTTTAAATAATCCAGAAAATATCTTCAAGAAGCATGCTGATGTG
ATGATTGGGAAGACTTTCAGTTGGAAATTGATAGCTACAATTCTTCTGTT
CATGATCTGCCCAAGGCTTCTCCGCTGGTTGGATTGGGCCATGTTTGACA
AAAACACAGTAGATTTCTTTGCAGCACTCATTGTTAAAACTATCAAGGAG
CGCAAAGAGAGTGGACAGAGAAGAAACGATTTGATAGATGTCTGTGTTGA
TATTTTGGAGAAAGAACGAAAAGAGAATGAGAAAAGTGTAGAAGATGAAG
AAGGGGCGAAAAGAAGAAATGacgaaatggagaaaataattATCGCCAAT
TCATTGATCATGTTTCTTGCAGGATTTGATACAGTCTCAAACGCTTCGTC
ACTGATGATGTATTTCTTGGCAAAGCATCAAGATTGCCAAGAAAGACTCT
ACCAAGAAGTTCAAGAAGCTATCGAATCCACCGGATCTACAAACTTCGAT
TACGCTACCATCATGAATATGCCTTATAtggaaaaattcttccaagaaac
CCTAAGAATGTANTCTACCATTATGAATATGCCTTATAtggaaaaattct
tccaagaaacCTTCAGAATGTATCCTTTAACGCATTTAGAAAGGTGCTCC
AAGGAAGAATATAAGATCCCTGACACTGATATAGTGATCCCAAAAGGTAT
TTTCGTTCGATATGCGGCAACTGCTGTGGTGAAAGATGAGAAATATTACC
CCAATCCTGAAGTATTCGACCCTGAGAATTACAGTGCTGAAAAGAAAGTT
GACAGACACCCGTTTGTCACTGGTGCCTTTGGACATGGACCGAGGAATTG
TATTGCTCAGCGATTCGCGACAATGGAAGTCAAAATTGTGATTGCACGGT
TGTTGAGCAAATATAAGATTGTACCATGCTCAAAAACTGTGGATGAACTG
ATTCCAGATCCAAGTTCAAGAAGTGGGCAACCGAAAGGGGATATTTGGGT
TACTGTTGAGAAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044480XLOC_044480Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071588-proteinTCONS_00071588-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071588-exon-scaffold_62-1491911889:314862..315871TCONS_00071588-exon-scaffold_62-1491911889:314862..315871Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1510915933:314862..315871TCONS_00071588-exon-scaffold_62-1510915933:314862..315871Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1575043694:314862..315871TCONS_00071588-exon-scaffold_62-1575043694:314862..315871Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1491911889:317230..317404TCONS_00071588-exon-scaffold_62-1491911889:317230..317404Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1510915933:317230..317404TCONS_00071588-exon-scaffold_62-1510915933:317230..317404Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1575043694:317230..317404TCONS_00071588-exon-scaffold_62-1575043694:317230..317404Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1491911889:317770..319957TCONS_00071588-exon-scaffold_62-1491911889:317770..319957Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1510915933:317770..319957TCONS_00071588-exon-scaffold_62-1510915933:317770..319957Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1575043694:317770..319957TCONS_00071588-exon-scaffold_62-1575043694:317770..319957Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1491911889:320863..321412TCONS_00071588-exon-scaffold_62-1491911889:320863..321412Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1510915933:320863..321412TCONS_00071588-exon-scaffold_62-1510915933:320863..321412Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1575043694:320863..321412TCONS_00071588-exon-scaffold_62-1575043694:320863..321412Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1491911889:322199..322508TCONS_00071588-exon-scaffold_62-1491911889:322199..322508Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1510915933:322199..322508TCONS_00071588-exon-scaffold_62-1510915933:322199..322508Clytia hemisphaericaexon
TCONS_00071588-exon-scaffold_62-1575043694:322199..322508TCONS_00071588-exon-scaffold_62-1575043694:322199..322508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:314862..322508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.84419	10.2035	8.7623	8.16599	2.28998	1.46107	2.45317	2.88142	4.50065	7.21527	11.0091	6.06413	9.99801	5.98485	8.4804	15.6506	7.70565	11.6416	12.219	15.726	8.39259	7.68256	7.93777	11.0018	10.5507	16.5491	76.57	54.4226	247.951	190.162
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00071588 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 216.853 bits (551), Expect = 8.782e-60
Identity = 155/530 (29.25%), Postives = 253/530 (47.74%), Query Frame = 3 
Query:  267 YMKHRLSYWKRRGIPEDKGHFPFGSKHAWDFVQGKMSFTQ-MTNFAYETHPG-EKVVGTYDMFGSPGLVIRDPDIAKLILVKD-FDNFMERKPIHYNMYDSNSKNNRYFPYMLTELRGQQWKNVRSSLTPVFTSGKLKNMIPLIHKVADNCETYL--DKNIGVEFEAKELLKGYALDIIISTGFGYENDTLNNPENIFKKHADVMIGKTFSWKLIATILLFMICPRLLRWLDWAMFDKNTVDFFAALIVKTIKERKESGQR-RNDLIDVCVDILEKERKENEKSVEDEEGAKRRNDEMEKIIIANSLIMFLAGFDTVSNASSLMMYFLAKHQDCQERLYQEVQEAIESTGSTNFDYATIMNMPYMEKFFQETLRMXSTIMNMPYMEKFFQETFRMYPLT-HLERCSKEEYKIPDTDIVIPKGIFVRYAATAVVKDEKYYPNPEVFDPENYSAEKKVDRHPFVTGAFGHGPRNCIAQRFATMEVKIVIARLLSKYKIVPCSKTVDELIPDPSSRSG--QPKGDIWVTVEKR 1829
            Y  H    +K+ GIP   G  P        F+   +S+ +    F  E H    KV G YD    P L I DPD+ K +LVK+ +  F  R+P     +  ++         ++    ++WK +RS L+P FTSGKLK M+P+I +  D     L  +   G     K++   Y++D+I ST FG   D+LNNP++ F ++   ++   F      +I +F     +L  L+  +F +   +F    + +  + R E  Q+ R D + + +D    +  E+ K++ D E            ++A S+I   AG++T S+  S +MY LA H D Q++L +E+   + +     +D                      T++ M Y++    ET R++P+   LER  K++ +I    + IPKG+ V   + A+ +D KY+  PE F PE +S + K +  P++   FG GPRNCI  RFA M +K+ + R+L  +   PC +T    IP   S  G  QP+  + + VE R
Sbjct:   25 YGTHSHGLFKKLGIP---GPTPL------PFLGNILSYHKGFCMFDMECHKKYGKVWGFYDG-QQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSA---------ISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLE------------LVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYD----------------------TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEI--NGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00071588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A48.782e-6029.25Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
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