TCONS_00071586 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071586
Unique Name	TCONS_00071586
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1399

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_62:306654..312438+
coding sequence from alignment at scaffold_62:306654..312438+

transcript sequence

>TCONS_00071586 ID=TCONS_00071586|Name=TCONS_00071586|organism=Clytia hemisphaerica|type=transcript|length=1399bp
TTTTATTCGTCATGGTGACAAAATAATATAACACAATGGTGTTAATaaaa
aataagtcaattctgGTCCATGGGTCCCTGACAAATTTGGATCAAAATGC
CATAAAGACAGTTGAGTGAATTGTTGTGAATCAGAGGACCTTTGCAAAGC
TTTCAAAATGGTTGTTGATTCCCTTGTTGTGAGACTTTATTTTTTGTTAA
CGTGTGTATTCATTGGACGAATTGTTTCGTTACCAGTTCTCCAGCCTATG
AGCTATTTGGAAAGGTATGGATATCACCAAAAACCGTCTGTAAAAAACCT
CCTGTTTGAATATTCATCATCAACTATCCCCGAAGAAGAAGAAACGATCA
AATCGAGCATCAAAAACTTCCAGAGATTCGTTGGACTCCCTCAAACAGGC
GAATTTGACGATGCAACATTACATCAAATGAAAGCACCAAGATGCGGACG
ACCAGATTTTCAATCACAAACATTACTTTTCTTGCTTCCCCAAAGATATT
ATTGGAAGAAATGGGATTTGACTTATCAAGTCGAGAAATATACCACTGAC
TTAGCTAAACGAGACATTGACCAGATTTTCCAAGATTCTTTCGAGCAATG
GTCAAAAGCATCTGATCTTACATTTCAGAATAGTAATAATTCTGTAGTTG
ATATCATGATGAAgtttGCTTCAGGAGACCACGGTGACAATTTCCCTTTC
GATGGAATTGGGCGTGTTTTAGCGCACGCCTTTCCTCCGCCCAATGGCGA
TATTCATTTTGATGACCATGAGAATTTCATTGCATCTGGAAGTCAAGGAG
GGATAAACCTCCCTTGGGTGGCTTTGCATGAAATCGGTCATAGTTTAGGT
CTTCAACACTCGAACGTCAAGTCATCTGTTATGTACCCTTTCTATCCTGG
ACACAGCCTAGCAAGTACCGTTAACCTTGATCAAGATGACATCACAAATA
TTCAACAGCTTTATGGTAAAAGACCAGtATCGACAACATCAACAACAACT
AAAGCCAACGTTATTCAAGACTGTCTTGACAAGTATCCAGACTATTTATG
TGGATCATGGGCTAGAGGTGGATTTTGCACTCGAAGTCAAAGAGTGGCAA
AGTATTGTCCAAAAACATGTAAACAATATCAATATTGCTGAGTTGGTGTA
AAGCGTAATGACCCAGCTGACAAACAACATTCcttcaacattcatctaac
gttttatggacgttgtgaacattagatttACGTTCAAAAACGTTGATTGC
CAAAGCTGGGGACGATGTATGAAACGAAATAATTCATTGTAAATTGTTTG
CACTTCTGAATGAAAGAGGAAAAGTTCCTTCATGGTGGCACAAAATACCA
GAGgaacgagatggagtttttacaagctcttatttgatttggttggtcg

Run BLAST on NCBI

protein sequence of TCONS_00071586-protein

>TCONS_00071586-protein ID=TCONS_00071586-protein|Name=TCONS_00071586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MVVDSLVVRLYFLLTCVFIGRIVSLPVLQPMSYLERYGYHQKPSVKNLLF
EYSSSTIPEEEETIKSSIKNFQRFVGLPQTGEFDDATLHQMKAPRCGRPD
FQSQTLLFLLPQRYYWKKWDLTYQVEKYTTDLAKRDIDQIFQDSFEQWSK
ASDLTFQNSNNSVVDIMMKFASGDHGDNFPFDGIGRVLAHAFPPPNGDIH
FDDHENFIASGSQGGINLPWVALHEIGHSLGLQHSNVKSSVMYPFYPGHS
LASTVNLDQDDITNIQQLYGKRPVSTTSTTTKANVIQDCLDKYPDYLCGS
WARGGFCTRSQRVAKYCPKTCKQYQYC

Run BLAST on NCBI

transcript from alignment at scaffold_62:306654..312438+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071586 ID=TCONS_00071586|Name=TCONS_00071586|organism=Clytia hemisphaerica|type=transcript|length=5785bp|location=Sequence derived from alignment at scaffold_62:306654..312438+ (Clytia hemisphaerica)
TTTTATTCGTCATGGTGACAAAATAATATAACACAATGGTGTTAATaaaa
aataagtcaattctgGTCCATGGGTCCCTGACAAATTTGGATCAAAATGC
CATAAAGACAGTTGAGTGAATTGTTGTGAATCAGAGGACCTTTGCAAAGC
TTTCAAAATGGTTGTTGATTCCCTTGTTGTGAGACTTTATTTTTTGTTAA
CGTGTGTATTCATTGGACGAATTGTTTCGTTACCAGTTCTCCAGCCTATG
GTAGGTTTTATCGCTGTCCCAGCTTGCAcagaacgttgtttcaacgttca
cttaacgttatatggacgttgtgaatgttagataaacgttgaaacaacgc
tgtgtgTCAGCTGGGGTCTCATTCTCAGGGAAGTATTCCTGGCATATTTC
TGGGataattttcctgttttttttctgaGCATACCCATAAAAgaagttta
tttaaaaaatctttccagcgtgcaacattttttgaataaaaatgttgaac
tttcgaactttttttttttaatccaaaattttaaattggcataaaagctt
gtagcttgaGAGTTAAACAATATTTTTGGCACCActaaaaaggtattttt
atattctttctaaaagcattcgGTGTATACCCTTTGAAATCAAGTGATCA
GGAGTTATATAGCCTTAAGTCTGGGACTTGTATGTTGGTTAATTTTGAAC
GAATATGTACGTCTTTCGGGTTTGAAAGGttaagaaattaaacaaaaata
ctcataaaatagtcggaaaataagaacaattaaagaacatttcaaggact
atgactcaaaaagttaagaaagctTCAAAGACTtgggacattcttataaa
aagtgtaaTGTACGATGACAATTATTGGCAAAAAGTATTTTGTTTTAGAG
CTATTTGGAAAGGTATGGATATCACCAAAAACCGTCTGTAAAAAACCTCC
TGTTTGAATATTCATCATCAACTATCCCCGAAGAAGAAGAAACGATCAAA
TCGAGCATCAAAAACTTCCAGAGATTCGTTGGACTCCCTCAAACAGGTAa
aatattttagcgattttcatTTTAGAGTCTTCCCTGCTGGTACGCAATGT
TGTTTTAACATTCATGAAACGTTCTATGAACGTTAGGGACGTCAAATGAA
CGTTGTATGAACGTTAGAGACGTCAAATGAACGTTGTATGAGCGTTAGGA
ACGTCACATGAACGTTGTATGAGCGTTAGGAACGTCACATGAACGTTGTA
TGAACGTTAGGGATGTTATCATAACGCTCTGTTCCAATTGGGTATTGTGA
TATTGGGTATTGTGATTGACTGAAAGATCCTGCTAAGCTGAAAAGTATTT
TAAGCCTTGTTGGTCTCAACTTTTTTAGAACTTTAATAATAACAGTGAAT
TAAGAATTTTTCTAATTCAAATAAAAGCTCAATTTCGCTTTAAGAAAGTT
AAGCAAGTTTCCCTATACATTTGgaccaaaattttagaaaagaatTGAAT
ATACACCTAGTCGGAAAGTTCCAATTCTCCTCGCAAAGCCGTTGTGCAAC
ACGATCAGGTAGACAAATTCAAAAACGacagatttcaaataaaaatggct
GAAGACTGACAATCCATAAGTTCTCTgaacaatcaaataaaaatatttgc
aatgaaattaaaaatgtcCGAATAATTCGATAGAGGAACTTAGCTGGTCG
TCTGTAAAACAACCCTGCAAAAACCGTTTCGCGGATAATGTGCGAGTTtg
gttttgtctttttttcaaagTGGCTATACCATAAATTATTCAACTTTTGC
GATTTTGCTGCGTTTAATTATTGTtgagcagattttttttttattttcag
tcgTGAGTACAAGGtacaaaattaagaaaaataatttcatcttTAGGCGA
ATTTGACGATGCAACATTACATCAAATGAAAGCACCAAGATGCGGACGAC
CAGATTTTCAATCACAAACATTACTTTTCTTGCTTCCCCAAAGATATTAT
TGGAAGAAATGGGATTTGACTTATCAAGTCGAGAAATATACCACTGACTT
AGCTAAACGAGACATTGACCAGATTTTCCAAGATTCTTTCGAGCAATGGT
CAAAAGCATCTGATCTTACATTTCAGAATAGTAATAATTCTGTAGTTGAT
ATCATGATGAAGTGAGTATTATAcaaattttaatctttttccCGTTTTTC
GAAGTTTGAAGCTCGAACAAGAAAGTcattttttggctattttttgaaat
cgaatACTGAAAGGTTATAGACTTCCAGGATATATTCTGAGCCtcattgg
accattcttgaacgttttaagggctctgaccatagtccaaaagttggttt
tggtatttgaacataaaagttatatttcaggttcctttaacacttttaac
aaagaattgcctttataaattgctttttaatcgaatcccttaagagtaat
taagaatttaattgcaaaaatgacNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaaatg
acgttatgaactttaaaaagatgttaataatatgttgcatcaccctcttt
tacaaaaagtgcttagttttaatgggtaattaacttttttgtttcaaaat
ttctttacactgtccgcaaagaattNNNNNNNNNNNNNctaaaaagatgt
gtcaaaagttatgactgtttttttaagcaaaatccagatgaaaaattgat
gaaaaaccactattttgaagatttcgagaaaaagaagcatttacaaaaat
tttccgcaaaaatttttattgttcggtataAGATACTCCATGTaatgcga
aaaatttttcaaaatgttttttcttcgccgaaactaagctcttcaaagtt
gaaatactcttcctcccaaaagtcttcattttcttcttcatcaaattttt
tcaatgcaatttttgaattttcagattcaggaatagtttttctaacagaa
aatgtataacatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgaaaatgtataacatgccatagttttgttggttatatcagtca
gaaaacacattttaaacacggcaattatgaaaaattcactatggtcagag
cccttaagtgtaGCGTTAAAACTCATAGATGATTCTGCCCTTCTAACCAA
AGTTAGAACGCTTCAAAATCGTTTGTGGCAATGATTTTGTTGGAAGTATC
CTTTTTTCTCAAGTATTTGCTTGTCTTCAAAGGTTGATTTTCAGTTCAAT
CATTGCAGTCTAGGGATCTGAGGGGTTTTAAAAGGGGTTTAAAATAacaa
tttctaaatttgaagcATTGGGTCTTTCATAATCATGTCTAGCTATCCGT
GGTTTATATGTCCGTTTTTAAAAAAGCATTGCTTTGTcaattaaagctat
tttatagAGAAACGGCACCGTGGTACGAAATGTATGCATTACGAGAAAAA
ATTCGATTATTTCTATGTGGCTATGTTGTTAGTCTTTATGTGGCTTCGGT
TTCTTGTTACTATTAAAAAATACGTCAGCAATTTTCTTGATTTCGAATGA
TTTTTATAAcactcaaaatttaatttttcaggtttGCTTCAGGAGACCAC
GGTGACAATTTCCCTTTCGATGGAATTGGGCGTGTTTTAGCGCACGCCTT
TCCTCCGCCCAATGGCGATATTCATTTTGATGACCATGAGAATTTCATTG
CATCTGGAAGTCAAGGAGGGATAAACCTCCCTTGGGTGGCTTTGCATGAA
ATCGGTCATAGTTTAGGTGGGTGGAAAAAAGTTACAATGTTTTCACATGT
ATCAAAAATAAAGGAAGAGAATGACTTTCATTACATCTTACAAAGCATTC
ACTTCAAACCTCCCATGATTCATTGCGACATATTACACTTATCAATCTTT
AAAGAGGGAAGAGACTAGCTTCAAGCTGGCCTTAAATGAGAGGCGTCAAA
ATGCCTAAAGGCGTTACATTGCCATCCTCAGAGATGAAGAGTTTTGACTT
CCTTTTCTTTAATGTAATCACCAGTCTCTTTGAAACCCGACCACACTGCA
AAGGGTTtgagtaagtaagtctgcgaccacaGTCGGAGCAGACCCAAAGG
cttctctttcgatagctgtctacctgaatgtaggggagggcgccactctt
tctccctggattgctccactcacccttgatccttctcttaattgctgagc
atcaagcagagaagcATCAAGTATTATTttaggaatctttggtatgaccc
gaccggggattgaacccacaaccttgcgcaccgtagccggatgctctacc
actgcactacggttgcAAAGGGTTTAGAGTTGTATCTACTACTACTTTTT
TCGCACAGGTCTTCAACACTCGAACGTCAAGTCATCTGTTATGTACCCTT
TCTATCCTGGACACAGCCTAGCAAGTACCGTTAACCTTGATCAAGATGAC
ATCACAAATATTCAACAGCTTTATGGTAAAAGACCAGGTAAAGATTTCTG
CTTTTTTAATTACCCACCCCTGTCATAGACCCGGTGGAACTGGCCCGCTA
CAATGAAATtaggccaaaatttcttccacaGTGGAAAAATACTTGGCAAG
ATTCAATCTcacttggaaattgaaaaaaccatccccattgaatAATGTGA
CCTAGGAACAAAAGGTTCCCGTTTTCATATCCCCAATGtggaaaaaagtt
ccatcgAGGTAGGGGTGTAGTTTTAGTTTTTAAGGCACAGCTCTCAAAAG
TTTTATGGAAAATAGACGTAATATTTTTGCTTTTCAACAATGTATTGCAA
GTTTTAAGTTGAGAATCGTGTGAACTGATAAAACCGgtaagaaaaaaaca
accacAACTTAATgcagaaaatcaaaatttcggatattttactttctatt
tttcttgCTCAATGTGTGGaggtaatatttttttttataaaaacaaacct
tataagaaggctttatggactcgaaaacacttagaaattcttagaaaatt
gcGCAAGAAATTCGTACAAGAAATTGtacaaaagcttaaaaaaactattc
aaaataagaacattttaggaaTATTTTTAGGATTAAAACCAAAAAGTTAA
AGACTTCttgattcaaaaattttaaatgttcttataaaatcgtGTATCAT
CGCTAAAGTCTTTGGCATGAAATTCATGTCTTAACTTAGTGGTGAGGAAC
CTTAAAACTGACTGAGAATAAATTGTGCTCCCAACCACAATCGggttata
tttttctttatagtATCGACAACATCAACAACAACTAAAGCCAACGTTAT
TCAAGACTGTCTTGACAAGTATCCAGACTATTTATGTGGATCATGGGCTA
GAGGTGGATTTTGCACTCGAAGTCAAAGAGTGGCAAAGTATTGTCCAAAA
ACATGTAAACAATATCAATATTGCTGAGTTGGTGTAAAGCGTAATGACCC
AGCTGACAAACAACATTCcttcaacattcatctaacgttttatggacgtt
gtgaacattagatttACGTTCAAAAACGTTGATTGCCAAAGCTGGGGACG
ATGTATGAAACGAAATAATTCATTGTAAATTGTTTGCACTTCTGAATGAA
AGAGGAAAAGTTCCTTCATGGTGGCACAAAATACCAGAGgaacgagatgg
agtttttacaagctcttatttgatttggttggtcg

Coding sequence (CDS) from alignment at scaffold_62:306654..312438+

>TCONS_00071586 ID=TCONS_00071586|Name=TCONS_00071586|organism=Clytia hemisphaerica|type=CDS|length=5904bp|location=Sequence derived from alignment at scaffold_62:306654..312438+ (Clytia hemisphaerica)
ATGGTTGTTGATTCCCTTGTTGTGAGACTTTATTTTTTGTTAACGTGTGT
ATTCATTGGACGAATTGTTTCGTTACCAGTTCTCCAGCCTATGAGCTATT
TGGAAAGGTATGGATATCACCAAAAACCGTCTGTAAAAAACCTCCTGTTT
GAATATTCATCATCAACTATCCCCGAAGAAGAAGAAACGATCAAATCGAG
CATCAAAAACTTCCAGAGATTCGTTGGACTCCCTCAAACAGGCGAATTTG
ACGATGCAACATTACATCAAATGAAAGCACCAAGATGCGGACGACCAGAT
TTTCAATCACAAACATTACTTTTCTTGCTTCCCCAAAGATATTATTGGAA
GAAATGGGATTTGACTTATCAAGTCGAGAAATATACCACTGACTTAGCTA
AACGAGACATTGACCAGATTTTCCAAGATTCTTTCGAGCAATGGTCAAAA
GCATCTGATCTTACATTTCAGAATAGTAATAATTCTGTAGTTGATATCAT
GATGAAgtttGCTTCAGGAGACCACGGTGACAATTTCCCTTTCGATGGAA
TTGGGCGTGTTTTAGCGCACGCCTTTCCTCCGCCCAATGGCGATATTCAT
TTTGATGACCATGAGAATTTCATTGCATCTGGAAGTCAAGGAGGGATAAA
CCTCCCTTGGGTGGCTTTGCATGAAATCGGTCATAGTTTAGGTCTTCAAC
ACTCGAACGTCAAGTCATCTGTTATGTACCCTTTCTATCCTGGACACAGC
CTAGCAAGTACCGTTAACCTTGATCAAGATGACATCACAAATATTCAACA
GCTTTATGGTAAAAGACCAGtATCGACAACATCAACAACAACTAAAGCCA
ACGTTATTCAAGACTGTCTTGACAAGTATCCAGACTATTTATGTGGATCA
TGGGCTAGAGGTGGATTTTGCACTCGAAGTCAAAGAGTGGCAAAGTATTG
TCCAAAAACATGTAAACAATATCAATATTGCTGAATGGTTGTTGATTCCC
TTGTTGTGAGACTTTATTTTTTGTTAACGTGTGTATTCATTGGACGAATT
GTTTCGTTACCAGTTCTCCAGCCTATGAGCTATTTGGAAAGGTATGGATA
TCACCAAAAACCGTCTGTAAAAAACCTCCTGTTTGAATATTCATCATCAA
CTATCCCCGAAGAAGAAGAAACGATCAAATCGAGCATCAAAAACTTCCAG
AGATTCGTTGGACTCCCTCAAACAGGCGAATTTGACGATGCAACATTACA
TCAAATGAAAGCACCAAGATGCGGACGACCAGATTTTCAATCACAAACAT
TACTTTTCTTGCTTCCCCAAAGATATTATTGGAAGAAATGGGATTTGACT
TATCAAGTCGAGAAATATACCACTGACTTAGCTAAACGAGACATTGACCA
GATTTTCCAAGATTCTTTCGAGCAATGGTCAAAAGCATCTGATCTTACAT
TTCAGAATAGTAATAATTCTGTAGTTGATATCATGATGAAgtttGCTTCA
GGAGACCACGGTGACAATTTCCCTTTCGATGGAATTGGGCGTGTTTTAGC
GCACGCCTTTCCTCCGCCCAATGGCGATATTCATTTTGATGACCATGAGA
ATTTCATTGCATCTGGAAGTCAAGGAGGGATAAACCTCCCTTGGGTGGCT
TTGCATGAAATCGGTCATAGTTTAGGTCTTCAACACTCGAACGTCAAGTC
ATCTGTTATGTACCCTTTCTATCCTGGACACAGCCTAGCAAGTACCGTTA
ACCTTGATCAAGATGACATCACAAATATTCAACAGCTTTATGGTAAAAGA
CCAGtATCGACAACATCAACAACAACTAAAGCCAACGTTATTCAAGACTG
TCTTGACAAGTATCCAGACTATTTATGTGGATCATGGGCTAGAGGTGGAT
TTTGCACTCGAAGTCAAAGAGTGGCAAAGTATTGTCCAAAAACATGTAAA
CAATATCAATATTGCTGAATGGTTGTTGATTCCCTTGTTGTGAGACTTTA
TTTTTTGTTAACGTGTGTATTCATTGGACGAATTGTTTCGTTACCAGTTC
TCCAGCCTATGAGCTATTTGGAAAGGTATGGATATCACCAAAAACCGTCT
GTAAAAAACCTCCTGTTTGAATATTCATCATCAACTATCCCCGAAGAAGA
AGAAACGATCAAATCGAGCATCAAAAACTTCCAGAGATTCGTTGGACTCC
CTCAAACAGGCGAATTTGACGATGCAACATTACATCAAATGAAAGCACCA
AGATGCGGACGACCAGATTTTCAATCACAAACATTACTTTTCTTGCTTCC
CCAAAGATATTATTGGAAGAAATGGGATTTGACTTATCAAGTCGAGAAAT
ATACCACTGACTTAGCTAAACGAGACATTGACCAGATTTTCCAAGATTCT
TTCGAGCAATGGTCAAAAGCATCTGATCTTACATTTCAGAATAGTAATAA
TTCTGTAGTTGATATCATGATGAAgtttGCTTCAGGAGACCACGGTGACA
ATTTCCCTTTCGATGGAATTGGGCGTGTTTTAGCGCACGCCTTTCCTCCG
CCCAATGGCGATATTCATTTTGATGACCATGAGAATTTCATTGCATCTGG
AAGTCAAGGAGGGATAAACCTCCCTTGGGTGGCTTTGCATGAAATCGGTC
ATAGTTTAGGTCTTCAACACTCGAACGTCAAGTCATCTGTTATGTACCCT
TTCTATCCTGGACACAGCCTAGCAAGTACCGTTAACCTTGATCAAGATGA
CATCACAAATATTCAACAGCTTTATGGTAAAAGACCAGtATCGACAACAT
CAACAACAACTAAAGCCAACGTTATTCAAGACTGTCTTGACAAGTATCCA
GACTATTTATGTGGATCATGGGCTAGAGGTGGATTTTGCACTCGAAGTCA
AAGAGTGGCAAAGTATTGTCCAAAAACATGTAAACAATATCAATATTGCT
GAATGGTTGTTGATTCCCTTGTTGTGAGACTTTATTTTTTGTTAACGTGT
GTATTCATTGGACGAATTGTTTCGTTACCAGTTCTCCAGCCTATGAGCTA
TTTGGAAAGGTATGGATATCACCAAAAACCGTCTGTAAAAAACCTCCTGT
TTGAATATTCATCATCAACTATCCCCGAAGAAGAAGAAACGATCAAATCG
AGCATCAAAAACTTCCAGAGATTCGTTGGACTCCCTCAAACAGGCGAATT
TGACGATGCAACATTACATCAAATGAAAGCACCAAGATGCGGACGACCAG
ATTTTCAATCACAAACATTACTTTTCTTGCTTCCCCAAAGATATTATTGG
AAGAAATGGGATTTGACTTATCAAGTCGAGAAATATACCACTGACTTAGC
TAAACGAGACATTGACCAGATTTTCCAAGATTCTTTCGAGCAATGGTCAA
AAGCATCTGATCTTACATTTCAGAATAGTAATAATTCTGTAGTTGATATC
ATGATGAAgtttGCTTCAGGAGACCACGGTGACAATTTCCCTTTCGATGG
AATTGGGCGTGTTTTAGCGCACGCCTTTCCTCCGCCCAATGGCGATATTC
ATTTTGATGACCATGAGAATTTCATTGCATCTGGAAGTCAAGGAGGGATA
AACCTCCCTTGGGTGGCTTTGCATGAAATCGGTCATAGTTTAGGTCTTCA
ACACTCGAACGTCAAGTCATCTGTTATGTACCCTTTCTATCCTGGACACA
GCCTAGCAAGTACCGTTAACCTTGATCAAGATGACATCACAAATATTCAA
CAGCTTTATGGTAAAAGACCAGtATCGACAACATCAACAACAACTAAAGC
CAACGTTATTCAAGACTGTCTTGACAAGTATCCAGACTATTTATGTGGAT
CATGGGCTAGAGGTGGATTTTGCACTCGAAGTCAAAGAGTGGCAAAGTAT
TGTCCAAAAACATGTAAACAATATCAATATTGCTGAATGGTTGTTGATTC
CCTTGTTGTGAGACTTTATTTTTTGTTAACGTGTGTATTCATTGGACGAA
TTGTTTCGTTACCAGTTCTCCAGCCTATGAGCTATTTGGAAAGGTATGGA
TATCACCAAAAACCGTCTGTAAAAAACCTCCTGTTTGAATATTCATCATC
AACTATCCCCGAAGAAGAAGAAACGATCAAATCGAGCATCAAAAACTTCC
AGAGATTCGTTGGACTCCCTCAAACAGGCGAATTTGACGATGCAACATTA
CATCAAATGAAAGCACCAAGATGCGGACGACCAGATTTTCAATCACAAAC
ATTACTTTTCTTGCTTCCCCAAAGATATTATTGGAAGAAATGGGATTTGA
CTTATCAAGTCGAGAAATATACCACTGACTTAGCTAAACGAGACATTGAC
CAGATTTTCCAAGATTCTTTCGAGCAATGGTCAAAAGCATCTGATCTTAC
ATTTCAGAATAGTAATAATTCTGTAGTTGATATCATGATGAAgtttGCTT
CAGGAGACCACGGTGACAATTTCCCTTTCGATGGAATTGGGCGTGTTTTA
GCGCACGCCTTTCCTCCGCCCAATGGCGATATTCATTTTGATGACCATGA
GAATTTCATTGCATCTGGAAGTCAAGGAGGGATAAACCTCCCTTGGGTGG
CTTTGCATGAAATCGGTCATAGTTTAGGTCTTCAACACTCGAACGTCAAG
TCATCTGTTATGTACCCTTTCTATCCTGGACACAGCCTAGCAAGTACCGT
TAACCTTGATCAAGATGACATCACAAATATTCAACAGCTTTATGGTAAAA
GACCAGtATCGACAACATCAACAACAACTAAAGCCAACGTTATTCAAGAC
TGTCTTGACAAGTATCCAGACTATTTATGTGGATCATGGGCTAGAGGTGG
ATTTTGCACTCGAAGTCAAAGAGTGGCAAAGTATTGTCCAAAAACATGTA
AACAATATCAATATTGCTGAATGGTTGTTGATTCCCTTGTTGTGAGACTT
TATTTTTTGTTAACGTGTGTATTCATTGGACGAATTGTTTCGTTACCAGT
TCTCCAGCCTATGAGCTATTTGGAAAGGTATGGATATCACCAAAAACCGT
CTGTAAAAAACCTCCTGTTTGAATATTCATCATCAACTATCCCCGAAGAA
GAAGAAACGATCAAATCGAGCATCAAAAACTTCCAGAGATTCGTTGGACT
CCCTCAAACAGGCGAATTTGACGATGCAACATTACATCAAATGAAAGCAC
CAAGATGCGGACGACCAGATTTTCAATCACAAACATTACTTTTCTTGCTT
CCCCAAAGATATTATTGGAAGAAATGGGATTTGACTTATCAAGTCGAGAA
ATATACCACTGACTTAGCTAAACGAGACATTGACCAGATTTTCCAAGATT
CTTTCGAGCAATGGTCAAAAGCATCTGATCTTACATTTCAGAATAGTAAT
AATTCTGTAGTTGATATCATGATGAAgtttGCTTCAGGAGACCACGGTGA
CAATTTCCCTTTCGATGGAATTGGGCGTGTTTTAGCGCACGCCTTTCCTC
CGCCCAATGGCGATATTCATTTTGATGACCATGAGAATTTCATTGCATCT
GGAAGTCAAGGAGGGATAAACCTCCCTTGGGTGGCTTTGCATGAAATCGG
TCATAGTTTAGGTCTTCAACACTCGAACGTCAAGTCATCTGTTATGTACC
CTTTCTATCCTGGACACAGCCTAGCAAGTACCGTTAACCTTGATCAAGAT
GACATCACAAATATTCAACAGCTTTATGGTAAAAGACCAGtATCGACAAC
ATCAACAACAACTAAAGCCAACGTTATTCAAGACTGTCTTGACAAGTATC
CAGACTATTTATGTGGATCATGGGCTAGAGGTGGATTTTGCACTCGAAGT
CAAAGAGTGGCAAAGTATTGTCCAAAAACATGTAAACAATATCAATATTG
CTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044479	XLOC_044479	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071586-protein	TCONS_00071586-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:306654..312438 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.029828	0	0	0	0	0.0635468	0.0766909	0.0717817	0	0	0	0	5.43606	6.22044	0	0	1.38781	1.74379	13.5389	29.2083	4.44169	4.01459	0.102622	0.0932596	0.288153	0.0857432	0	0	0.0661964	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR021190	Pept_M10A
IPR003582	ShKT_dom
IPR006026	Peptidase_Metallo
IPR024079	MetalloPept_cat_dom
IPR002477	Peptidoglycan-bd-like
IPR001818	Pept_M10_metallopeptidase
IPR033739	M10A_MMP

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031012	extracellular matrix

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

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BLAST of TCONS_00071586 vs. Swiss-Prot (Human)
Match: MMP7 (Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.061e-44
Identity = 87/206 (42.23%), Postives = 113/206 (54.85%), Query Frame = 2

Query:  365 NFQRFVGLPQTGEFDDATLHQMKAPRCGRPDFQSQTLLFLLPQRYYWKKWDLTYQVEKYTTDLAKRDIDQIFQDSFEQWSKASDLTFQNSNNSVVDIMMKFASGDHGDNFPFDGIGRVLAHAFPPP---NGDIHFDDHENFIASGSQGGINLPWVALHEIGHSLGLQHSNVKSSVMYPFYPGHSLASTVNLDQDDITNIQQLYGKR 973
              Q+F GLP TG  +   +  M+ PRCG PD    +L    P    W    +TY++  YT DL    +D++   +   W K   L F+       DIM+ FA G HGD++PFDG G  LAHAF P     GD HFD+ E +   GS  GIN  + A HE+GHSLG+ HS+  ++VMYP Y G+       L QDDI  IQ+LYGKR
Sbjct:   61 EMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEYSLF---PNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-TDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTY-GNGDPQNFKLSQDDIKGIQKLYGKR 261

The following BLAST results are available for this feature:

BLAST of TCONS_00071586 vs. Swiss-Prot (Human)

BLAST of TCONS_00071586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MMP7	1.061e-44	42.23	Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1	[more]

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TCONS_00071586 (transcript) - C. hemisphaerica