TCONS_00071580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071580
Unique NameTCONS_00071580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071580 ID=TCONS_00071580|Name=TCONS_00071580|organism=Clytia hemisphaerica|type=transcript|length=3690bp
AAGATATCATCACATTGACCAAGATGGTATTTTGGACGATTTGGAAAGAG
AAGCATATTCGGAAAACAGgtTAAGGAACAAATTTTACGACAATCAATTC
TTCAATGAGGACGAAGATGAAAATCGAAATGAAATCAAATCAGAGTTGGA
TCCTGACGGTACACTTATTAACATGTACGAAACAATGGAAGATTCGAAGA
ATCGAAAAACAAAAGGAGAAGAAAGTGAAGAAGATAATTCAGTTGATGAT
GCAATAAATGACTCAAGTTCtttagatgaaaatgaagaagatccTTCAAA
ATCTGATGATGTCAACGATGTTGATTTGACAGAACAACAAGACGACACAG
ttttagtgaAAGGATTTGTCAAGAGGCTCAAAATTGGTAGATCATCACGA
ATTTTGAAGACGATTCCCACGTGGCCGAAAGAATGGAAAGTCAGTTTCAA
TATCCAACCATATCATACGCAATTTAATAATTGGAGAAGTATCATCCATT
TCACGACCGGTAGTAGTAGAGGACCAGTAGGGTCAAGAATCCCAGCCGTA
TGGTTTCGGCCCTGGTCCCATAAATTGTATATTGTGTCATATGTCAATGA
CAAAGAAAACACTTATACTTCATCAACTTTACCAACAAATCGATTCACCA
GAGTCCAGATTTCACAACGCAAGCAGAATAATGGCAAATATATCTACCAA
ATCAAAATCAATGGAATAAAAGTTCGCTCAAAGGTGAATCGAATCCCAAG
AGAGTTTAACAATGTGCTGATTTATGCACCAGACAAATGGTCAAAAAGTA
GTCTTGCTTCTTTGAGGAACTTCAAATTTGAAGGATATTTGGAACCCAAT
TTACCAGCATCCAATATTGTCCAGAAAAACTCGTTCGCAAAATGTCAAGA
GTCAAGAAGAAGAACTGACTGCAGCAAAGCTAGCGATGAATTCCGTACCT
TTGATGGCACCtgtaataataaaaagaaccctaAATGGGGAGCCACTGAA
ACTCCACTCAGCCGAATTATTGACGCTGATTATGTGGACGGTATCACAAC
ACCTCGAGGATTCCCAAACACTTCACCAGTCGTTCCAACTGCAAATCAAG
TCTCAGAAGCTGTATTTCAAGTGGAAACTACTAACAATGGTAATGGGAAT
GGTTTGGCTGTTTCTTTCATGACATTTGGACAGTTTTTAGATCATGATTT
AACTGAAGTACAAATGAACAGATGTCAACTCAAAGTTTTTGGAAGATGCG
ACAACATCAAAGAATCCTTCGTTTATCCATGTCTTCCTATCCTTTTCAAC
GACTCGTCTTCAGAATGCACAACATTCAGCCAGTCTGAATCACTCTGCCC
GGAAAATGATAAACGTCCGGGAATACGTCAAATGCCAAACCATCTGAGTG
CTTTCATTGACGCCTCACAAATCTATGGAAATAGTGATACATCAGCTGAA
AGATTGAGAGATCAAAATGATCGTGCATTGATGGCAATCACCGAAGATGG
TTTAATGCCAATCGTTCAAATCCCTGGATTTGCCGCATGTTCCGTGTTTA
AAGATCTGTTAGGTGAGCGTACAACGGAATGCCGTACTTTGGGAGGATGT
TCTTTAGTCGGTGACGTCAGAGGAGACGAAAACATAGCTCTGCATTCCAT
GCACACTTTATGGATCCGCGAGCATAACAGAATCGCAAAACGACTCCGTA
GAATGAATCCTAAGATGGACGATGAAGAAATCTATCAAACTGCTCGTAAG
ATCGTTGGCGGTATTTGGGCTAACTTGGTTTATGAGGAATATTTACCAGC
ATTGGTTCAAGTTTCACCATACCAAAAATATAAGGCCGATGTTGATCCGT
CCATTAGTAATTCATTTGCTGCCGCAGCTTTCCGATACGGTCATAGCTTG
GTACCCAACTCTTTCCAACAAAATAATGCAAGCTTTAATCCTGTTAGTGA
ACCAATCTCCCTACAAAATGCATTCTTCAACCGCGAGCCTGTGAACTTTC
GTGGTATCGAACCAACGTTGTTTGGTATCACTGGCAACCAGTCTAATGAA
GTCGATAATAATTTCGCTAAAGGAATCGCGCGACGATTATTTGTCCGCCC
TGGTGAAGGTTTCCATTATGACTTACTAGCCTTGAATGTACAACGTGGCA
GAGATCACGGGCTACCAACGTACGGAGCTTACAGAAAATTCTGTGGTCTA
CCAACATTGAACTCTTGGGCTGATGCTCGATCATGTTTCTTACCCAAAGC
TGTTCAAGCTTTCAAGAAGATTTATAAAAGTCCAAATGATATTGATCTGT
TTGCTGCTGGAATTTCCGAAATTCATCTTTCCAATTCAGAACTCGGACCA
ACATTTAATTGCTTGATCAAAAAGCAATTTGAAGATGTCCGAGACGGTGA
TCGATTCTTTTACCGAAACAAAAACGTTTTCACTCGAAATCAACTAAAAG
CTATCGAGAAGGTTACTTTTGCAAGTGTTCTGTGTGCGAATCTAAAGAAT
ATTGTATGCATCCAACCCAATGCACTGAGAGTTCCAAACGATGGCTCTAA
CCGTAGAATCACCTGCGATAGAATTCCAAAACTTAACTTAGGTCCTTGGA
GACAGTAAATTATCTTTTTGTCTCGATAATTTGTGTAGACTATGATATGG
GTTTCTCTTATAAATTTTGTTCTGAATTAATTTAGCTATATAAAGTATTT
GTAATGTttcattttgatcaaattttaattATGTAAACTTACtttagttt
taaaatttcttctatTTATAATTGTGGTCCCAGAGGCCGTTGTCGCACCA
AAGATTTGTCACTATTTCATTAGTTTGATCGAAGACAGCAGACGAAACTT
ATGTGTTAAAAAAGGATAGGTTAAACAGAAAATCTGGCAGTGATATTTTT
CACCACAAAGAATTTGTTTACAGagagcttcaaaataaaataaaagtagg
ATTCTCTAGCGatcgtggctagccatcgtgTGTAAACATTTGAGTGTGAC
TTTActaaaagactttgaaagactttgaaagactttgaaagactttgaaa
gactttgaaagactttgaaagactttgaaagactttgaaagactttgaaa
gactctgaaagactttgaacagctttggataggttttgaaagcacccaga
gcctcttgggaactcgTTTNTCTCTTAAAGCTACCTACAACATCCAGAGG
ACTAAATTACTGTGTTCAACTATAACTTAAACGACGTGCGATGCCGGGAA
GCGGCTAGTTGTTTTATATTTCTAGTTTAATTTACAATCATTAAATAACt
caatcaataaaaaaatgaaaactctcaaagtctgtaaatttttgaaaaaa
ttccctttATTAAAGACGAAGAAGCTGTtctcatagatttataaatcccg
aagggctatatgtcgtgctttaagctctacttccaagcaaaaaaagtgaa
tatcgcaaagaATATAGCtcctattgttttcgaaaacccacgaagcttct
gattggtcaagttctagaattatattgtaatgtcacgtgacttaggtagt
aTTTcccacccctgtgtcacagacccactgggaccccagccccactggaa
atcTCAGCAATAATTtcgtcccggtgggaaaataccctggaatttcagcc
ctacTGGGGAAATGACTTTAATTTTACTCCCCCATTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_62:259392..268521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071580 ID=TCONS_00071580|Name=TCONS_00071580|organism=Clytia hemisphaerica|type=transcript|length=9130bp|location=Sequence derived from alignment at scaffold_62:259392..268521+ (Clytia hemisphaerica)
AAGATATCATCACATTGACCAAGATGGTATTTTGGACGATTTGGAAAGAG
AAGCATATTCGGAAAACAGGTATCGACATCTCTTGAAAGAATTAAACGAT
GCAGAACAATATAGTGATAGGTGAGTTTAATGACGTCTTTCTAACGTTCA
ATGGACgttttggacaatatttgaatATTGGTTGAATGATGTGTCGCACC
AATAGGAACCCCTCTTGTTTTACTTTGACAATAGACTTTAAAATTATCTT
GGGGACGGGAAGAAAATATGGAAATTACTTAAATAGCAAACATGTAAAAA
GTTTCAATTCTTGAAATGTTATgatgagagaaatttcaaatgaaaaattt
acaGAAGAAAGATAGAATTTTAATTCTTCACTAGTTCAAGTAAAAAAACA
CACGTTACCTTAATTGcctactcaaagtttcatgccacATACAGAATGGC
AATCTTCAATGAAATACACAAACtctataaaaatttaattttgaaaatct
ttttaggtTAAGGAACAAATTTTACGACAATCAATTCTTCAATGAGGACG
AAGATGAAAATCGAAATGAAATCAAATCAGAGTTGGATCCTGACGGTACA
CTTATTAACATGTACGAAACAATGGAAGATTCGAAGAATCGAAAAACAAA
AGGAGAAGAAAGTGAAGAAGATAATTCAGTTGATGATGCAATAAATGACT
CAAGTTCtttagatgaaaatgaagaagatccTTCAAAATCTGATGATGTC
AACGATGTTGATTTGACAGAACAACAAGACGACACAGGTAAACATCTAGA
ATCAAGATCATACGAGATGAGGCAATCTGTTTCTTTCCAAAATGGCAaac
caatgttgtttcaacattcatctaacaCTATATGAACGTttttaacgtta
gatggacgtcgAAACGAAATTGCTTGACTATAAACTCAATCCTGGTACAA
AAAAGTACCaagaaaaagaaatccaaatCTCAGTAGTTGCAGgaaatatc
aataaattttgcGTTTAGGAAAATAGCGACAGGCTTCCAATCTCCTCTTG
TATATTGTGTATGAGGCTTTTAATAACTTCAAGAGACTGTCTAAACGTCG
AAAAAAGCCCAGAATAGCTATAAGCACAGTTAACATATGCGAAGACTGGG
GCCGAATGTAATTTCGCATAGCTTAAAAAACTAGCTTAGATTCGGTGTAT
CAAAACTTTCACTCAGATCCACTCttggaatttatttattacCATCCAAT
TGTTTCATCGTCTTCTCCCGGGTGTTTAATAAGAATCCCCACccaataat
aaatttttcgaacattttccattcaggacattcttattccaactccccgc
ttattaatttttgggaaaatgtttatAAAAGCTCCCTCTTTCGCCCTAAT
TCTGCTAtattagcctccttttaaaaagttttctagcCAGGAAATTTTTA
TTCCATCCCCCACtaaattttgagaatctttcCTCCAAATCCCTCctttt
attaggcacctgagagtatcTAATGTTTACATCGTCCGCCAGTTTTAATA
ATGTCAGTTGAATGTTGAAataatgttgtgtgccagctgggaggcTACTT
CGATATATcaacaaacattttttttagttttagtgaAAGGATTTGTCAAG
AGGCTCAAAATTGGTAGATCATCACGAATTTTGAAGACGATTCCCACGTG
GCCGAAAGAATGGAAAGTCAGTTTCAATATCCAACCATATCATACGCAAT
TTAATAATTGGAGAAGTATCATCCATTTCACGACCGGTAGTAGTAGAGGA
CCAGTAGGGTCAAGAATCCCAGCCGTATGGTTTCGGCCCTGGTCCCATAA
ATTGTATATTGTGTCATATGTCAATGACAAAGAAAACACTTATACTTCAT
CAACTTTACCAACAAATCGATTCACCAGAGTCCAGATTTCACAACGCAAG
CAGAATAATGGCAAATATATCTACCAAATCAAAATCAATGGAATAAAAGT
TCGCTCAAAGGTGAATCGAATCCCAAGAGAGTTTAACAATGTGCTGATTT
ATGCACCAGACAAATGGTCAAAAAGTAGTCTTGCTTCTTTGAGGAACTTC
AAATTTGAAGGATATTTGGAACCCAATTTACCAGCATCCAATATTGTCCA
GAGTGAGTATCAAAAAATCTTACGTACAATGTGTCCCACCCTCCCCCCTC
CCCCGAAAAAatggacaaatttttatatgatgtaaaattctcaaaagtCA
TTATTTTAATTGGGCTTAAAATGATCGAAATAAGATTACaattctctgtt
caatcaatagatattccATTCCCAAGATGTTTGAATAGGTTTATGAGATT
GAAATATTAAGTATACAAGTTGCATAACATTTCACCTAAATCATGGggat
tttatataaaaatgtgtCCACTTTTTTTGGGACAGATGCACTAGTTGGAC
CTTGATTTGTACAATATTGACATGTAAAAGTCTATTCTATGCAACTACTG
AGAAAGAAAGTGAAGCATTTTGTTGGTGTTTAGTCCTTGTGGGTTTCTTT
CTCAAAAGTCttgaagtattttttcaagtaatacaccttttcgatcgtag
tcgtgcggtcaggcgcgtgccactttcatcccactaaactcgatctaatc
cttttttgacacatttttcttttgtatataggtccaaaaaaaggactggg
acagttttagtgggataaagcagaCAAAAAATGTCCGCGCGGCGATTGGC
AGCTACGgtcaaaaaaagtgtattaataATGAACATAAAATTTACCAATT
TTCTAGAAAACTCGTTCGCAAAATGTCAAGAGTCAAGAAGAAGAACTGAC
TGCAGCAAAGCTAGCGATGAATTCCGTACCTTTGATGGCACCtgtaataa
taaaaagaaccctaAATGGGGAGCCACTGAAACTCCACTCAGCCGAATTA
TTGGTAAGGGCGTCCACACGTCTTTTTTATGATAAAAACTAAACTTTTGA
AGCAttctgatgttcttaactgttttaagttttaagaatggaaatatttt
ctaatcattctaattttcaccatttttgcgAGTATTTTCTGCAATGTTCT
AAGAATTTAGGTGTTTTAAAGTTaataaagtcttaaaatgttctaaactt
gttgtcgatattttggccattgaaacCTCAtcttcttttatataaaaacg
tgTAGGTTCATATATAGAATGACAAGAAAGACGCTCCGATTTTGGCCTTC
GGTCTAAAAAGGGGTTTGAAGGGGTTAAAAGTTCTGATAGCTAAATGGGC
TTATTTTCCTAGAATTTAGTCTAATTTTTGTATATTTGTCAACAAAATAG
ACTATGAAAATAAACTTGATCTGGAAGGTGTCTGTTAGTTACAAGGGCGT
AAGAAAGTGATTGAATAATATTATGTTCCAGACGCTGATTATGTGGACGG
TATCACAACACCTCGAGGATTCCCAAACACTTCACCAGTCGTTCCAACTG
CAAATCAAGTCTCAGAAGCTGTATTTCAAGTGGAAACTACTAACAATGGT
AATGGGAATGGTTTGGCTGTTTCTTTCATGACATTTGGACAGTTTTTAGA
TCATGATTTAACTGAAGTACAAATGAACAGATGTCAACTCAAAGTTTTTG
GAAGGTAAGATATGTTTCTGTTTGTCTCAGGGACGAAAGTGAGAGACgca
aaaatgttatcaaaagcGCTGTCGACTTCACTTTTAttgatagaaagaaa
aaatcGAGTGGAGACACgggaaagcgtttcaggttggtgggatgcaccaa
cgcgaaaaaaaacttctcgtttCCTCAAACCTTTACATTCTTGTGTTACA
CGTTTACTTTTTAAGAAGAATATCCAggtgttcttaaattttttagtttc
aggcctaaaaatgttctttacgtgttcttattttcaccaccaCGTATTTC
TGTCCATCTTCTTAGGCAATCAAGGTGTTTTAGATTCCGCAatgctttta
aatgtttttaactagttcttaaatattttggccatcgaagccatatgttc
ttatatatactTTCTTcgttaaaaaacgtgtatttttctgtgatttcttT
ATGTGATGTTACCCcactgacacacaacgttgtttcaacgttcatctaat
gttcataacgtccatataacgttagatgaacgctgaaacaacgttgtgtg
ccagctgggtgtcTATGATTTTTCTAGCCTTACAGGGTTTTGGAATTGGG
CCGATACTTCTTNGGTGTCTATCAGAGGCACCaagtaaattttttgaaat
ttctcctggatttttttgattttaaaaacaacACAAGGACAAAAATATTT
GCAAACTCTATTGATAAAATCAGTATACTAATAATATAAAAAGTCATCAT
CCAAAAATACTACCGCATTATCGATCAAACCatctaaattcaatttttgg
cgtctattttttatcttagaaaatatatttattCTTTTTACTCTAGAATT
CCAGTGGTTGACATATTTACtgattttaattaaatttcatGACCAAGgct
cttttttatcaaaagaaaaaaatgttatcCTTTGCTCAATATTTCGTAAC
tgcagaaagaaaagaaaaaaccaaaaaaagaatagtaaattctaaaatag
aTAATTTTACATCTGATAATCTTGCCGTAAAACATGTCAAAGAAACAGTC
GCATTCCATcctattttggtttaaattaaaTAAAGTTAAGATTTAACCAA
TCAAACTCCAACAAGCCTCGTTTTCTCCacttaatacacccctgtctcac
agccccggtggaacttttttcctcagtggggataaaaattcctatcgaaa
ttcaagttgggataaaaattttattgttccaaggttaaaaaatccaatag
ggatggttttagagtgcaGTTTTTAAACGTTGattttcgaatggggatga
aattaaagTCGATCTctcagtggggctaaaattcccGGTTGTTGGGGACA
AaatatttgccaaattttctagtGGCGCTAGGGTCCCAgtaggtctgtga
cacaggggtgtcttgttttttcgacgtttatctaacgttcacaacgtcca
tataacgttagatgaaagttgaaataacgttgtgtgccagctgggaagaa
GCAGAGATCTAGGATGCAGAGTTTCAAGTTTTTGAGGCAGTGAGATTCAT
ATTTTAGAAGCAGAGTTTTAGATCTGGGAATGTGAGAAGCCAAATCTCAA
AAGCTGAGATGCAGGGGTGAAACTCTAAAAAGTCATTTGGCTGTAAAGGT
ACATTGATCGTGTACGATGGAATCAGTCACACCTCACCAAGCTTTGTACT
CTGGATAcagatttttcatttaaaaaacataaaatcagGCTTTATTCATT
TTAACTAAACTTGTAAGATTTTTTCATCTTCCAGATGCGACAACATCAAA
GAATCCTTCGTTTATCCATGTCTTCCTATCCTTTTCAACGACTCGTCTTC
AGAATGCACAACATTCAGCCAGTCTGAATCACTCTGCCCGGAAAATGATA
AACGTCCGGGAATACGTCAAATGCCAAACCATCTGAGTGCTTTCATTGAC
GCCTCACAAATCTATGGAAATAGTGATACATCAGCTGAAAGATTGAGAGA
TCAAAATGGTAAGTACACACTCGGGAAATAAGAGATTNCATCAGCTGAAT
TATTGAGGGATCAGAATGGTAAGTACACACTCgggaaataagagatttcc
aatcctggaaatatcttgaaaataggaaaatatgacttttctgtatttcc
aaagttgtggaaataccatatttcatgatatttccaaatctgaaaTGTGA
TGTTTCGATTAATTTCAGAATtagaaatatcatgaaatatgtaaaacttt
ggaaatatagaaaagtcatatttccatatttacaaaagtatatggaaaca
tcatattttcaagatatttccatgATTGAAAATCTCATATTTCGCACAGT
GAAAATCAGGgttaaaatatttgagacagaGGGGATTTCCCTGTGAAATT
TTAGACACCACAAATGTTTTTGAAGCGCGTTAAACTAAAGTTGGAAAGTC
GAGTTTTTACTccgagttttaacatgagattTAAGACTAAGGTTCTTAGG
ATtacaggatttaaaagctcaaaattatttcaatatAATAAGTATAGCCT
AAAAGTCACCTAAGCCCTCCAAATCGATATATTCAATGACATAAAGTAGA
AATACTAAAATAACAATTCGCACGAGCTCTAAGTTCTTAATttaacgtta
aaatacactgaAATCTCATTATATTTCGACCAAGAATTTTTAGATATGCA
AGGCAGAACCTTTCGAATCCAAAACAATTGTACAATGGAGTCTTCATAAT
GTCTCATTAATTTGAATAAGTATTCTTgtcctttcagttaacaatgcctt
acttcataactcgaaGGTTTCCTGAAGCCAAAAAAAATGTGTTCCCCGTG
CGCGTTCAAGTTGCTTATCGATTTGATCGGGCAGGATCAACTTTTcgaac
tccagcggcacgtctcCGTCGGCCTCAAGgtcagccccccccccgggtga
cAGATCCTTACGGAAAAAACTGTTAATGATCTTCCTTTAGCCTGTATTCG
GGGAGATTTAATTCCCTTTTTTCTGCCCGCAAAAACAAGCACTACTAGAC
AACACTGGGTCAAGTAAAAGGACAAGAAAAGTAACTGAATGAAATATTGA
ATGGTCAGAGTTATAGAGTGGTAACACACTCTATAACTAAAATAGATGGG
GTACAAAGCCGGCTGTCTGAACTAGAAGTTAGTTGGCAATGTAGGacata
acaaaaaaaaacttttcatgaaaataattctttattgTCCTTTATCTTTA
TTACTTCAGATCGTGCATTGATGGCAATCACCGAAGATGGTTTAATGCCA
ATCGTTCAAATCCCTGGATTTGCCGCATGTTCCGTGTTTAAAGATCTGTT
AGGTGAGCGTACAACGGAATGCCGTACTTTGGGAGGATGTTCTTTAGTCG
GTGACGTCAGAGGAGACGAAAACATAGCTCTGCATTCCATGCACACTTTA
TGGATCCGCGAGCATAACAGAATCGCAAAACGACTCCGTAGAATGAATCC
TAAGATGGACGATGAAGAAATCTATCAAACTGCTCGTAAGATCGTTGGCG
GTATTTGGGCTAACTTGGTTTATGAGGAATATTTACCAGCATTGGTTCAA
GTTTCACCATACCAAAAATATAAGGCCGATGTTGATCCGTCCATTAGTAA
TTCATTTGCTGCCGCAGCTTTCCGATACGGTCATAGCTTGGTACCCAACT
CTTTCCAACAAAATAATGCAAGCTTTAATCCTGTTAGTGAACCAATCTCC
CTACAAAATGCATTCTTCAACCGCGAGCCTGTGAACTTTCGTGGTATCGA
ACCAACGTTGTTTGGTATCACTGGCAACCAGTCTAATGAAGTCGATAATA
ATTTCGCTAAAGGAATCGCGCGACGATTATTTGTCCGCCCTGGTGAAGGT
TTCCATTATGACTTACTAGCCTTGAATGTACAACGTGGCAGAGATCACGG
GCTACCAACGTACGGAGCTTACAGAAAATTCTGTGGTCTACCAACATTGA
ACTCTTGGGCTGATGCTCGATCATGTTTCTTACCCAAAGCTGTTCAAGCT
TTCAAGAAGATTTATAAAAGTCCAAATGATATTGATCTGTTTGCTGCTGG
AATTTCCGAAATTCATCTTTCCAATTCAGAACTCGGACCAACATTTAATT
GCTTGATCAAAAAGCAATTTGAAGATGTCCGAGACGGTGATCGATTCTTT
TACCGAAACAAAAACGTTTTCACTCGAAATCAACTAAAAGCTATCGAGAA
GGTTACTTTTGCAAGTGTTCTGTGTGCGAATCTAAAGAATATTGTATGCA
TCCAACCCAATGCACTGAGAGTTCCAAACGATGGCTCTAACCGTAGAATC
ACCTGCGATAGAATTCCAAAACTTAACTTAGGTCCTTGGAGACAGTAAAT
TATCTTTTTGTCTCGATAATTTGTGTAGACTATGATATGGGTTTCTCTTA
TAAATTTTGTTCTGAATTAATTTAGCTATATAAAGTATTTGTAATGTttc
attttgatcaaattttaattATGTAAACTTACtttagttttaaaatttct
tctatTTATAATTGTGGTCCCAGAGGCCGTTGTCGCACCAAAGATTTGTC
ACTATTTCATTAGTTTGATCGAAGACAGCAGACGAAACTTATGTGTTAAA
AAAGGATAGGTTAAACAGAAAATCTGGCAGTGATATTTTTCACCACAAAG
AATTTGTTTACAGagagcttcaaaataaaataaaagtaggATTCTCTAGC
GatcgtggctagccatcgtgTGTAAACATTTGAGTGTGACTTTActaaaa
gactttgaaagactttgaaagactttgaaagactttgaaagactttgaaa
gactttgaaagactttgaaagactttgaaagactttgaaagactctgaaa
gactttgaacagctttggataggttttgaaagcacccagagcctcttggg
aactcgTTTNTCTCTTAAAGCTACCTACAACATCCAGAGGACTAAATTAC
TGTGTTCAACTATAACTTAAACGACGTGCGATGCCGGGAAGCGGCTAGTT
GTTTTATATTTCTAGTTTAATTTACAATCATTAAATAACtcaatcaataa
aaaaatgaaaactctcaaagtctgtaaatttttgaaaaaattccctttAT
TAAAGACGAAGAAGCTGTtctcatagatttataaatcccgaagggctata
tgtcgtgctttaagctctacttccaagcaaaaaaagtgaatatcgcaaag
aATATAGCtcctattgttttcgaaaacccacgaagcttctgattggtcaa
gttctagaattatattgtaatgtcacgtgacttaggtagtaTTTcccacc
cctgtgtcacagacccactgggaccccagccccactggaaatcTCAGCAA
TAATTtcgtcccggtgggaaaataccctggaatttcagccctacTGGGGA
AATGACTTTAATTTTACTCCCCCATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044475XLOC_044475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071580-exon-scaffold_62-1491911889:259392..259460TCONS_00071580-exon-scaffold_62-1491911889:259392..259460Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:259392..259460TCONS_00071580-exon-scaffold_62-1510915933:259392..259460Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:259392..259460TCONS_00071580-exon-scaffold_62-1575043694:259392..259460Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:259898..260178TCONS_00071580-exon-scaffold_62-1491911889:259898..260178Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:259898..260178TCONS_00071580-exon-scaffold_62-1510915933:259898..260178Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:259898..260178TCONS_00071580-exon-scaffold_62-1575043694:259898..260178Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:261019..261543TCONS_00071580-exon-scaffold_62-1491911889:261019..261543Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:261019..261543TCONS_00071580-exon-scaffold_62-1510915933:261019..261543Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:261019..261543TCONS_00071580-exon-scaffold_62-1575043694:261019..261543Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:262198..262344TCONS_00071580-exon-scaffold_62-1491911889:262198..262344Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:262198..262344TCONS_00071580-exon-scaffold_62-1510915933:262198..262344Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:262198..262344TCONS_00071580-exon-scaffold_62-1575043694:262198..262344Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:262823..263045TCONS_00071580-exon-scaffold_62-1491911889:262823..263045Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:262823..263045TCONS_00071580-exon-scaffold_62-1510915933:262823..263045Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:262823..263045TCONS_00071580-exon-scaffold_62-1575043694:262823..263045Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:264826..265049TCONS_00071580-exon-scaffold_62-1491911889:264826..265049Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:264826..265049TCONS_00071580-exon-scaffold_62-1510915933:264826..265049Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:264826..265049TCONS_00071580-exon-scaffold_62-1575043694:264826..265049Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1491911889:266301..268521TCONS_00071580-exon-scaffold_62-1491911889:266301..268521Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1510915933:266301..268521TCONS_00071580-exon-scaffold_62-1510915933:266301..268521Clytia hemisphaericaexon
TCONS_00071580-exon-scaffold_62-1575043694:266301..268521TCONS_00071580-exon-scaffold_62-1575043694:266301..268521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:259392..268521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0510356	0.0298691	0.0231011	0.067836	0.192834	0.23894	0.236403	0.0982126	0	0.095591	0.0303224	0	0.212152	0	0.312558	0.531565	3.36253	0.283811	0.654971	8.0466	3.04694	0.705347	3.19977	3.17163	3.10705e-10	0	116.802	184.836	0.536349	2.67084
Blast
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BLAST of TCONS_00071580 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.424e-86
Identity = 203/608 (33.39%), Postives = 307/608 (50.49%), Query Frame = 2 
Query:  884 FAKCQESRRRTDCSKAS--DEFRTFDGTCNNKKNPKWGATETPLSRIIDADYVDGITTPRGF-PN---TSPVVPTANQVSEAVFQVETTNNGNGNGLAVSFMTFGQFLDHDL--TEVQMNRCQLKVFGRCDNIKESFVYPCLPILF--NDS----SSECTTFSQSESLCPE-------NDKRPGIRQMPNHLSAFIDASQIYGNSDTSAERLRD-QNDRALM--AITEDGLMPIVQIPGFAACSVFKDLLGERTTECRTLGGCSLVGDVRGDENIALHSMHTLWIREHNRIAKRLRRMNPKMDDEEIYQTARKIVGGIWANLVYEEYLPALV------QVSPYQKYKADVDPSISNSFAAAAFRYGHSLVPNSFQQNNASFNPVSEP-ISLQNAFFNR-EPVNFRGIEPTLFGITG--NQSNEVDNNFAKGIARRLFVRPGEGFHYDLLALNVQRGRDHGLPTYGAYRKFCGLPTLNSWADARSCFL-PKAVQAFKKIYKSPNDIDLFAAGISEIHLSNSELGPTFNCLIKKQFEDVRDGDRFFYRNKNVFTRNQLKAIEKVTFASVLCANLKNIVCIQPNALRVPNDGSNRRITCDRIPKLNLGPWR 2602
             + C   RR  +CS      ++RT DGTCNN ++P WGA+ T   R++ + Y +G  TPRG  P+       +P    VS  +   ET             M +GQFLDHDL  T V +++ +      C N+  S   PC  ++   NDS     + C  F +S  +C         N   P  R+  N L+++IDAS +YG+++  A  +RD  + R L+   I +    P++           +D       E  +   C L GD R +E + L SMHTLW REHNRIA  L ++NP  D + IY   RKIVG    ++ Y+ +LP ++       +  Y  Y   ++  I N+FA AAFR+GH+LV     + + +F P+++  + L  AFF+    VN  GI+P L G+ G   +           +  RLF         DL A+N+QRGRDHG+P Y  YR +C L   +++ D ++    P+  +  K++Y S  +IDLF A + E  +  S LGPT  CL+  QF+ +RDGDR +Y N  VF+  QL  I++ + A +LC N  NI  +Q +  RV  +  +   +CD IP+++L  W+
Sbjct:  720 LSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTETVTPDEQ--FTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYP--REQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRD-------ENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVA-EFPHGYGSCDEIPRVDLRVWQ 1313
The following BLAST results are available for this feature:
BLAST of TCONS_00071580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN6.424e-8633.39Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
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