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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071578 ID=TCONS_00071578|Name=TCONS_00071578|organism=Clytia hemisphaerica|type=transcript|length=4037bpRun BLAST on NCBI protein sequence of TCONS_00071578-protein >TCONS_00071578-protein ID=TCONS_00071578-protein|Name=TCONS_00071578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=906bp MLKSTTLTFLLLVLAMTTEATRYHHIDQDGILDDLEREAYSENRYRHLLKRun BLAST on NCBI transcript from alignment at scaffold_62:257127..268521+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071578 ID=TCONS_00071578|Name=TCONS_00071578|organism=Clytia hemisphaerica|type=transcript|length=11395bp|location=Sequence derived from alignment at scaffold_62:257127..268521+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_62:257127..268521+ >TCONS_00071578 ID=TCONS_00071578|Name=TCONS_00071578|organism=Clytia hemisphaerica|type=CDS|length=24489bp|location=Sequence derived from alignment at scaffold_62:257127..268521+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071578 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 306.99 bits (785), Expect = 2.210e-85 Identity = 203/608 (33.39%), Postives = 307/608 (50.49%), Query Frame = 1
Query: 1231 FAKCQESRRRTDCSKAS--DEFRTFDGTCNNKKNPKWGATETPLSRIIDADYVDGITTPRGF-PN---TSPVVPTANQVSEAVFQVETTNNGNGNGLAVSFMTFGQFLDHDL--TEVQMNRCQLKVFGRCDNIKESFVYPCLPILF--NDS----SSECTTFSQSESLCPE-------NDKRPGIRQMPNHLSAFIDASQIYGNSDTSAELLRD-QNDRALM--AITEDGLMPIVQIPGFAACSVFKDLLGERTTECRTLGGCSLVGDVRGDENIALHSMHTLWIREHNRIAKRLRRMNPKMDDEEIYQTARKIVGGIWANLVYEEYLPALV------QVSPYQKYKADVDPSISNSFAAAAFRYGHSLVPNSFQQNNASFNPVSEP-ISLQNAFFNR-EPVNFRGIEPTLFGITG--NQSNEVDNNFAKGIARRLFVRPGEGFHYDLLALNVQRGRDHGLPTYGAYRKFCGLPTLNSWADARSCFL-PKAVQAFKKIYKSPNDIDLFAAGISEIHLSNSELGPTFNCLIKKQFEDVRDGDRFFYRNKNVFTRNQLKAIEKVTFASVLCANLKNIVCIQPNALRVPNDGSNRRITCDRIPKLNLGPWR 2949
+ C RR +CS ++RT DGTCNN ++P WGA+ T R++ + Y +G TPRG P+ +P VS + ET M +GQFLDHDL T V +++ + C N+ S PC ++ NDS + C F +S +C N P R+ N L+++IDAS +YG+++ A +RD + R L+ I + P++ +D E + C L GD R +E + L SMHTLW REHNRIA L ++NP D + IY RKIVG ++ Y+ +LP ++ + Y Y ++ I N+FA AAFR+GH+LV + + +F P+++ + L AFF+ VN GI+P L G+ G + + RLF DL A+N+QRGRDHG+P Y YR +C L +++ D ++ P+ + K++Y S +IDLF A + E + S LGPT CL+ QF+ +RDGDR +Y N VF+ QL I++ + A +LC N NI +Q + RV + + +CD IP+++L W+
Sbjct: 720 LSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTETVTPDEQ--FTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYP--REQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRD-------ENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVA-EFPHGYGSCDEIPRVDLRVWQ 1313 The following BLAST results are available for this feature:
BLAST of TCONS_00071578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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