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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071576 ID=TCONS_00071576|Name=TCONS_00071576|organism=Clytia hemisphaerica|type=transcript|length=2476bpRun BLAST on NCBI protein sequence of TCONS_00071576-protein >TCONS_00071576-protein ID=TCONS_00071576-protein|Name=TCONS_00071576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=703bp RLDLLDENMDSLLKKAKIEVSDNHPDETEINQRYGRYTDIMHPKENHKRSRun BLAST on NCBI transcript from alignment at scaffold_62:190425..211476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071576 ID=TCONS_00071576|Name=TCONS_00071576|organism=Clytia hemisphaerica|type=transcript|length=21052bp|location=Sequence derived from alignment at scaffold_62:190425..211476+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_62:190425..211476+ >TCONS_00071576 ID=TCONS_00071576|Name=TCONS_00071576|organism=Clytia hemisphaerica|type=CDS|length=33792bp|location=Sequence derived from alignment at scaffold_62:190425..211476+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071576 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 86.2705 bits (212), Expect = 1.193e-17 Identity = 62/221 (28.05%), Postives = 108/221 (48.87%), Query Frame = 3
Query: 117 DIMHPKENHKRSFTNREDRKWKPDSGGLLQIPYSFDGIKFNSPEKKIIEDAIAYVNQQISCYDSVWVPYKFDQHSD-KTRILFVKEDGCWSFIGKQSGNLIQKLGLDDPCIYKGE--IVHQMMHAMGVYHTHQRPDRDEFVEIQWQNLDDSAKDFNIEPNVDPNYQQISKFDYGSLMHFKRNDQSINGKDTIVTKNPDAQSV-IGQRDHLSEEDVKELNEL 767
DI+ P S T+ KW G++++P+ K++ P +++I +A+A + +C +F + D + I + GC+S +G+ G +Q + L C+ KG ++H++MH +G +H H R DRD ++ + W + F I + ++ +DY S+MH+ R S G TI A SV IGQR +LS D+ + +L
Sbjct: 77 DIIRPSPFRLLSATSN---KWPMGGSGVVEVPFLLSS-KYDEPSRQVILEALAEFERS-TCI-------RFVTYQDQRDFISIIPMYGCFSSVGRSGG--MQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEI---LPGFEINFIKSQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLW--APSVHIGQRWNLSASDITRVLKL 278 The following BLAST results are available for this feature:
BLAST of TCONS_00071576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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