TCONS_00071574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071574
Unique NameTCONS_00071574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071574 ID=TCONS_00071574|Name=TCONS_00071574|organism=Clytia hemisphaerica|type=transcript|length=179bp
CGATGAACAAGAAAattctagaggaaaagagGTTGGAAAGGCAAGAGATT
CAGATTGGCCACCCAttgttggagattttcttattgGAGCATTCGAGGAT
GGTTTTTACCCAGgtgAAGTTGTGAGAGTTGGTACAGAAGATGTGAACTG
CAATTTTATGACACCTGTTAGTGTAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_62:93166..93602+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071574 ID=TCONS_00071574|Name=TCONS_00071574|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at scaffold_62:93166..93602+ (Clytia hemisphaerica)
CGATGAACAAGAAAattctagaggaaaagaggtaactttaaatcttaaac
ccACCTATTCCATGAACCTGTTGTGTTTTTCAGGATAACTGAATTGTTTT
ACCAATCAGAGGAGAAACAAGCACTTAATTTATCATTTCAATATGCTcta
gatttcaaattttatgtATCATTTTCTTCAATATATAGGTTGGAAAGGCA
AGAGATTCAGATTGGCCACCCAttgttggagattttcttattgGAGCATT
CGAGGATGGTTTTTACCCAGGTTAGATTTTATTTCATCTTTAAATATGTA
TAATACTGTATTGAATAGAGAAAGAAACACCTGATCTTTTACTTAGTAAT
GacattctttttactttttaggtgAAGTTGTGAGAGTTGGTACAGAAGAT
GTGAACTGCAATTTTATGACACCTGTTAGTGTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044471XLOC_044471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071574-exon-scaffold_62-1491911889:93166..93196TCONS_00071574-exon-scaffold_62-1491911889:93166..93196Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1510915933:93166..93196TCONS_00071574-exon-scaffold_62-1510915933:93166..93196Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1575043694:93166..93196TCONS_00071574-exon-scaffold_62-1575043694:93166..93196Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1491911889:93354..93435TCONS_00071574-exon-scaffold_62-1491911889:93354..93435Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1510915933:93354..93435TCONS_00071574-exon-scaffold_62-1510915933:93354..93435Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1575043694:93354..93435TCONS_00071574-exon-scaffold_62-1575043694:93354..93435Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1491911889:93537..93602TCONS_00071574-exon-scaffold_62-1491911889:93537..93602Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1510915933:93537..93602TCONS_00071574-exon-scaffold_62-1510915933:93537..93602Clytia hemisphaericaexon
TCONS_00071574-exon-scaffold_62-1575043694:93537..93602TCONS_00071574-exon-scaffold_62-1575043694:93537..93602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:93166..93602 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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