TCONS_00071570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071570
Unique NameTCONS_00071570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071570 ID=TCONS_00071570|Name=TCONS_00071570|organism=Clytia hemisphaerica|type=transcript|length=547bp
GTTCTAAATAAAGTAATTTGTGCAAAGAAGTTACGGATAGTAACGTTTCT
ATggtttcctttatttttagtttattagACGATATGTATAACGATGAACA
AGAGTATAAGGAAAAAATCAGGTTTGTTCTGAATAAAGTAATTTGTGCAA
AGAAGTTACGGACAGTAACGTTTCTATggtttcctttatttttagtttat
tagACGATATGTATAACGATGAACAAGagtataaagaaaaaatcaggtTT
GTTCTGAAtaaagtattttgtgcaaagaAGTTACGGACAGTAACGTTTCT
ATggtttcctttatttttagtttaCTCCACGATATGTATAACGATGAACA
GGAgtataaagaaaaatcagtttTGTTCTAAATAAAGTAATTTGTGCAAA
GAAGTTACGGACAGTAACGTTTGATGAGTAACGAAAGATGAAGAGGagaa
aagttattttataaactAATCTACAGTGGGGGCAAGGTGGTCAGTGACTT
TTTATATGGATTGAATTGGCAAAGGACAACAATGATTCTATGGGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_61:32394..32940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071570 ID=TCONS_00071570|Name=TCONS_00071570|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_61:32394..32940 (Clytia hemisphaerica)
AAACCCATAGAATCATTGTTGTCCTTTGCCAATTCAATCCATATAAAAAG
TCACTGACCACCTTGCCCCCACTGTAGATTagtttataaaataacttttc
tCCTCTTCATCTTTCGTTACTCATCAAACGTTACTGTCCGTAACTTCTTT
GCACAAATTACTTTATTTAGAACAaaactgatttttctttatacTCCTGT
TCATCGTTATACATATCGTGGAGtaaactaaaaataaaggaaaccATAGA
AACGTTACTGTCCGTAACTtctttgcacaaaatactttaTTCAGAACAAa
cctgattttttctttatactCTTGTTCATCGTTATACATATCGTctaata
aactaaaaataaaggaaaccATAGAAACGTTACTGTCCGTAACTTCTTTG
CACAAATTACTTTATTCAGAACAAACCTGATTTTTTCCTTATACTCTTGT
TCATCGTTATACATATCGTctaataaactaaaaataaaggaaaccATAGA
AACGTTACTATCCGTAACTTCTTTGCACAAATTACTTTATTTAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044468XLOC_044468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071570-exon-scaffold_61-1491911889:32394..32940TCONS_00071570-exon-scaffold_61-1491911889:32394..32940Clytia hemisphaericaexon
TCONS_00071570-exon-scaffold_61-1510915933:32394..32940TCONS_00071570-exon-scaffold_61-1510915933:32394..32940Clytia hemisphaericaexon
TCONS_00071570-exon-scaffold_61-1575043694:32394..32940TCONS_00071570-exon-scaffold_61-1575043694:32394..32940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:32394..32940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0427663	0	0.283099	0	0	0.301245	0	0	0.437383	0	0.0698081	0.58676	0	0	0	0.0290625	0	0	0	0	0	0	0.353677	0.928256	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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