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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071569 ID=TCONS_00071569|Name=TCONS_00071569|organism=Clytia hemisphaerica|type=transcript|length=2230bp
CCCAATTCAAGGGCATtatatcactgtgaaaaaaaatctacaaataaCGA
TTTAAGCGTAAAATACAGCTTAAAGTTACAAAAACATCACCAACATCAaa
gaaagtcttttttataaggtCATAACTTTCTAGAGAGTAGTTATCTTTCA
AAAATCTATCACAGTGCGATAATGTTGTAGGATCTAAATTTCACCAAtaa
gaaaatgataattacAAAACAATTCTATCTAAAActacttttttcttctt
cgtttatattttcattttcaaactcTATTTCGAAAGTTTTTGTGCGGAAA
TACCCAAAAATATATTCTCAGCGAGcacaaaattgcattttaattgaatt
tctatcaaaattatTCCAATGCAGTTTATTTTGAAGTATCATGATGGTGG
TGGTGGCCCCGGGCCCAGTGGTATATCCGTTTAATTTaattcttattatt
ttttgtttgatattttttcaaattacaaaaagaaagtCTCATCCGTGTCC
ATGGGTTGCTTTTACTTCATAATAaattttatattattggaaagacATTT
GTAAGTGGAATACTTTtaataaataaagttatttgatgaaaattggaaaa
tgaagatgacAATGGAGATGGAAAAAAATGAGATCTTTTAGAATATTTTC
ACatgaaagaaattttaacaTCATAACTGAGAGAGATTCTCTCAAAAATC
TTTTGCGACAACCTATTTCCATCTAGTCTAccacaaattgatttttaaaa
ttagaACTTTGAGCTTGTTTTGGATGGAACATTCCATTTTTTCCATCTTC
AGCAACTAAATGGGAATTTGGAATATCTCATTCTTTATAGCTCCTAAAAG
CtctgaaattgtttttgtaaGATATATACCTTTAATCTTGATAAACTTGA
TAAAGACAACCGTCGAAACGTCGTACACTACTGTGTTTTTATATTCATTT
ACCTTTAATCTTGGATCACGTCACGGAGCTACTGGGTCTAGAACTTACTT
TGTGAAGCTAAAAGGCCAAAAAATGTGCTTCCGTCAAATGTGCATTTTCT
GATATTatatttcatctttttcttcTCTTCAGAATATTATCTTAACATTT
TAATTACAATGGCTAGCAACAATGTTGAAACAAACTACACATATGATCCA
AATGAAATTATCAACAATGTTGAACAAAATGAAGAAGTTATCCACCAGTT
AAGGGTAAGTAACTTCTTTCATTAAATTGACCAAGTAGGTGACGCTGTAA
AGTCGCAGAAAAGATTGGTTGTTATTATAACGAGGAACAAGAAGTAACAT
CTTTTTTTTCCCTTCAAAGTGTCATCTTATTAAATAAATTGATCTAAAAT
GGCAAGCAATATGGAAAACGAAAACGATATTATCTACCAACTAAGAGGTA
AGTAACTTCTTTCCTTAAATTGACCAAGTAGGTGACGCTGTAAAGTCGCA
TAAAAGATTAGTTGTTATTATTTTAAGAAGTAACATCTTTTTTTCCCTTC
AAAGTTTTAgcttaaaaatttatcaatttatcattttattacAATGGCAA
GCAACAATATTACAAattagaccagcgtccgagattcaaaaaaggcctta
aaaatggttttcgtagggcaccccttagatcagggcaaatttttgatatt
attctcctaatagggtgaagaattgataaaaaaaatttgcccttcgaatc
tcctgcagttttcgagtgaatcgatttttagttaatcgataaaacttatc
aagggtcccccctttagtaacggttttttcgaagtctgaaaatcaaatat
ctgaggctgccaacggattcagcgtgagaagtagataaagaaaatggggt
tatttgttaagttttgaccacctggtgccgagaaatggcattcttaaggc
gaaaaatcgacgtttttggcgttttccgatgacgtcagcatttttctacg
agcattttcagaaaaaatcatttccacagctggatagccctgaattagta
gtatccgaaaatggtatggtttgtcaaGTTTTGATgcctagatctcgaga
tattttagtttaaatattgaaaattatcgatatttttagctgagtcagca
gtttttccaggtttttcAGCATCTttacccaccttaaaaatgaaatatcc
cATGATCGgaacatcgaaagttaacaaaccataccattttcagatactac
taattcagggctatccagctgtggaaatga Run BLAST on NCBI transcript from alignment at scaffold_61:30000..32229 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071569 ID=TCONS_00071569|Name=TCONS_00071569|organism=Clytia hemisphaerica|type=transcript|length=2230bp|location=Sequence derived from alignment at scaffold_61:30000..32229 (Clytia hemisphaerica)
tcatttccacagctggatagccctgaattagtagtatctgaaaatggtat
ggtttgttaactttcgatgttcCGATCATgggatatttcatttttaaggt
gggtaaAGATGCTgaaaaacctggaaaaactgctgactcagctaaaaata
tcgataattttcaatatttaaactaaaatatctcgagatctaggcATCAA
AACttgacaaaccataccattttcggatactactaattcagggctatcca
gctgtggaaatgattttttctgaaaatgctcgtagaaaaatgctgacgtc
atcggaaaacgccaaaaacgtcgatttttcgccttaagaatgccatttct
cggcaccaggtggtcaaaacttaacaaataaccccattttctttatctac
ttctcacgctgaatccgttggcagcctcagatatttgattttcagacttc
gaaaaaaccgttactaaaggggggacccttgataagttttatcgattaac
taaaaatcgattcactcgaaaactgcaggagattcgaagggcaaattttt
tttatcaattcttcaccctattaggagaataatatcaaaaatttgccctg
atctaaggggtgccctacgaaaaccatttttaaggccttttttgaatctc
ggacgctggtctaatTTGTAATATTGTTGCTTGCCATTgtaataaaatga
taaattgataaatttttaagcTAAAACTTTGAAGGGAAAAAAAGATGTTA
CTTCTTAAAATAATAACAACTAATCTTTTATGCGACTTTACAGCGTCACC
TACTTGGTCAATTTAAGGAAAGAAGTTACTTACCTCTTAGTTGGTAGATA
ATATCGTTTTCGTTTTCCATATTGCTTGCCATTTTAGATCAATTTATTTA
ATAAGATGACACTTTGAAGGGAAAAAAAAGATGTTACTTCTTGTTCCTCG
TTATAATAACAACCAATCTTTTCTGCGACTTTACAGCGTCACCTACTTGG
TCAATTTAATGAAAGAAGTTACTTACCCTTAACTGGTGGATAACTTCTTC
ATTTTGTTCAACATTGTTGATAATTTCATTTGGATCATATGTGTAGTTTG
TTTCAACATTGTTGCTAGCCATTGTAATTAAAATGTTAAGATAATATTCT
GAAGAgaagaaaaagatgaaatatAATATCAGAAAATGCACATTTGACGG
AAGCACATTTTTTGGCCTTTTAGCTTCACAAAGTAAGTTCTAGACCCAGT
AGCTCCGTGACGTGATCCAAGATTAAAGGTAAATGAATATAAAAACACAG
TAGTGTACGACGTTTCGACGGTTGTCTTTATCAAGTTTATCAAGATTAAA
GGTATATATCttacaaaaacaatttcagaGCTTTTAGGAGCTATAAAGAA
TGAGATATTCCAAATTCCCATTTAGTTGCTGAAGATGGAAAAAATGGAAT
GTTCCATCCAAAACAAGCTCAAAGTtctaattttaaaaatcaatttgtgg
TAGACTAGATGGAAATAGGTTGTCGCAAAAGATTTTTGAGAGAATCTCTC
TCAGTTATGAtgttaaaatttctttcatGTGAAAATATTCTAAAAGATCT
CATTTTTTTCCATCTCCATTgtcatcttcattttccaattttcatcaaat
aactttatttattaAAAGTATTCCACTTACAAATgtctttccaataatat
aaaattTATTATGAAGTAAAAGCAACCCATGGACACGGATGAGactttct
ttttgtaatttgaaaaaatatcaaacaaaaaataataagaattAAATTAA
ACGGATATACCACTGGGCCCGGGGCCACCACCACCATCATGATACTTCAA
AATAAACTGCATTGGAataattttgatagaaattcaattaaaatgcaatt
ttgtgCTCGCTGAGAATATATTTTTGGGTATTTCCGCACAAAAACTTTCG
AAATAgagtttgaaaatgaaaatataaacgaagaagaaaaaagtagTTTT
AGATAGAATTGTTTTgtaattatcattttcttaTTGGTGAAATTTAGATC
CTACAACATTATCGCACTGTGATAGATTTTTGAAAGATAACTACTCTCTA
GAAAGTTATGaccttataaaaaagactttcttTGATGTTGGTGATGTTTT
TGTAACTTTAAGCTGTATTTTACGCTTAAATCGttatttgtagatttttt
ttcacagtgatataATGCCCTTGAATTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071569-exon-scaffold_61-1491911889:30000..32229 | TCONS_00071569-exon-scaffold_61-1491911889:30000..32229 | Clytia hemisphaerica | exon |
| TCONS_00071569-exon-scaffold_61-1510915933:30000..32229 | TCONS_00071569-exon-scaffold_61-1510915933:30000..32229 | Clytia hemisphaerica | exon |
| TCONS_00071569-exon-scaffold_61-1575043694:30000..32229 | TCONS_00071569-exon-scaffold_61-1575043694:30000..32229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:30000..32229 . |
Blast
The following BLAST results are available for this feature:
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