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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071561 ID=TCONS_00071561|Name=TCONS_00071561|organism=Clytia hemisphaerica|type=transcript|length=1044bp
CCGGTTGGAGCAGGAGAGGAGGCGGAAAAGGAACCGGTAGGAGCAGGAGA
GCAGGTCGGAGAAGAACCGGTAGGAGCAGGAGAGGAGGTGTTACCAGCTA
TAGCTCTTCCCACAAGGGGCCGCCCAAGACAGATTTAAAACGAGAAGAGA
AAAAGAGGTCAAGGAAAGGCTCGTCAAATTGGAAAAAGAACGAAGACCCA
CAAAAGTCCGGCCAATGATAGGCACTTACCCTTGACCAAGGGACGGATCA
AAGAAATGAAAGTGGTGGAGTTGAGGGAAGAGCTGCGAAGAAGGAATCTA
CCGATGACTGGGCTTAAGTTGGTCATCATTGAAAGGTTGCTGACCTACTG
GAGAGAGAGCGAGATGGAGGAGGAGGAACACGAAGAAAGTAAAAGGGAGA
AGAGATTTTAATGATAAAGATGGTGGAGGTGAAGGAGAGCTCAGAAGAAT
ACATTTGAGAAGCAGTGGGCTGAAAGCGCAGCTAATCGAATTATTGCTGG
CCTATAAGTCTTGTTTGCTCACTTGTTTGGGATCGTACttataaatcttt
caaaaatagttAGGATTAGttaattttcaattcatttattttttgtgtcc
taagttccttttcaattttgagtttgatttttcaatgctatttatttatt
tcaaatttctaaaattcaTTTTGGTATGTTTAAAATCGGAATATCGAAAA
GGTTTTGTTCTTACAACAACAGAGGATATtttggtttgaatgtttttgag
aaaGGAAGTTTTCAAGCATTATAATTTACCATTTTAATTTAAgcatttga
aacaaaaaagccTGAACTCTTAATCGAAATTGAACTAAAATGCTCTTTTG
TAATTGTTGAAAGTCATTTTTGAGTGGAACACTTTCTTAATAAAGTtcac
gttttcttaaaaaaaagatcatgaaaatgaaagatgaagaaaaaatcACA
TTCTGGTAGAATTGTTTACCTcgttggaactaatttttgcgggttttaat
tttagcgtttatcgcggtttttcgtcaaaaccgcaaaaattaat Run BLAST on NCBI transcript from alignment at scaffold_61:21693..24491- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071561 ID=TCONS_00071561|Name=TCONS_00071561|organism=Clytia hemisphaerica|type=transcript|length=2799bp|location=Sequence derived from alignment at scaffold_61:21693..24491- (Clytia hemisphaerica)
CCGGTTGGAGCAGGAGAGGAGGCGGAAAAGGAACCGGTAGGAGCAGGAGA
GCAGGTCGGAGAAGAACCGGTAGGAGCAGGAGAGGAGGCGGAAAAGGAAC
CGGTTGGAGTAGGAGAGGAGGTGTTACCAGCTATAGCTCTTCCCACAAGG
GGCCGCCCAAGACAGATTTAAAACGAGAAGAGAAAAAGAGGTCAAGGAAA
GGCTCGTCAAATTGGAAAAAGAACGAAGACCCACAAAAGTCCGGCCAATG
ATAGGCACTTACCCTTGACCAAGGGACGGCAAGGGATGGATCAAAGAAAT
GAAAGTGGTGGAGTTGAGGGAAGAGCTGCGTAGAAGGAACCTACCGATGA
CTGGGCTTGAGTTGGTCATCATCGAAAGGTTGCTGACCTACTGGATAGAG
AACGAGATGGAGGAGGAGGAACATGAAGACAGTAAGAGGAAGAAAAAAGA
TTATTATGATGATAATGATAATGATAGTGGTGGCTCCGGGCCCAGTGGTA
CGTCCGTTTAATTTAATTCTTATTATTTTTTGTTTGATATTTTTTCAAAT
TACAAAAAGTAAGTCTCAACCGTGTCCATGGTTCAAAGTTTAAATCAAAG
TTTAATGAAGGCAATGTAGAAACAAAAAAATAGGAAAAACTAATGAACAG
ATTTTTAACAGTCCAAAATTCTTTCGAAAAATGAGACTAATCATATTTAG
CAAACTGTAATTCTAAGTCTTTGTACAAAAAAAATAGGAAAACTAAGGAA
CAAATTTTTAACAAAGTCCAAAAAACCCTATTTTTGGGCATTTTAAGGCC
CTAATTAGCTCAATTTTTTCTTTCGAAAATGGGCCTCCATCACATTTTTC
TAATCACCATTTTGCACCTTTGTACCGAAAATCACAAAACTCCTATGATT
CAATCCTGAGAAAAGTTGGTAACAGATGAACAGACGGACGAACACAGGCT
AATTTATAGGACCTCCAGGTAGGTCCAAAAATGAAATAAAGTATAAAAGT
GTTACCCATTCAAAGAAATAATTTACAAATGCTTTGCTAAACTTAACACA
TTAAACCCACTGACAGAAAAGTTTTTTTCGAAACCGTTTGGGCAGCGACA
ATACGAGTATCCAGAATAGCAAACTTCCACAATGCTCCTCCGCTTAAACA
AATAAACGAAAGGGAAAATCTCTCGGAATTTTGTGAGTCTGGAAGCCAAC
TTGGATTACAATAACAAACCAGAAAGCGTGATGCGAAATCCATAAAAAAG
ACTACTTTCTGAGATCTTTTAAAACCCAAGAAATTGAGTCACAGTTTAAG
AAAAACGATTAAAATTTTGGGTAAGGAAAAATGAAGTCTTCTATTCTCTG
TAGGTTCAGTAGTGAAGTATCTCAATCTTGGTAACCATCTGATAACCCCT
TTAAGATATATGCTAAGGAGTTTTAGTTAAAACAAATAAAAGGGTGCTTG
CTTGTTGTGGACAGAATTAGTAGAATTTTTGGCAACTAAAAAAATCATTA
CATTATCACATCACTTAAGATCAATTATCACATCACGTAAGATCAATAAT
CATCAAGAATTTTGTTTCGGTTTAGGGTGAAAACCTTGCCCAAATCCTCG
AGGAGGCAGAAGCTGAGGTCAACAGTGAGCAGGTTAGTATTCTTACTTTA
AGTACTACATCGTCAGTGAATCATTTATAAAGCAGTGTAATTTTAACTTT
AATTGAATTGAGAAATGTAAAGAATATTGACAACCATATTTATTTTCATA
GCAAAGCAGAAGAAGCAGGAGAGGAGGTTGGAGAAGAACCTGTAGGAGCA
GGAGAGGAGATCGGAGAAGAACCGGTAGGAGCAGGAGAGGAGGTGTTACC
AGCTATAGCTCTTCCCACAAGGGGCCGCCCAAGATGGTTATAAAATGAGA
AGAGAAAAATAGTTCAAGGAAAGGCTCGTCATATTGGAAAAAGAACGAAG
ACTCACGAAAGTCTGGCCAATGATAGGCACTTACCCTTGACCAAGGGACG
GATCAAAGAAATGAAAGTGGTGGAGTTGAGGGAAGAGCTGCGAAGAAGGA
ATCTACCGATGACTGGGCTTAAGTTGGTCATCATTGAAAGGTTGCTGACC
TACTGGAGAGAGAGCGAGATGGAGGAGGAGGAACACGAAGAAAGTAAAAG
GGAGAAGAGATTTTAATGATAAAGATGGTGGAGGTGAAGGAGAGCTCAGA
AGAATACATTTGAGAAGCAGTGGGCTGAAAGCGCAGCTAATCGAATTATT
GCTGGCCTATAAGTCTTGTTTGCTCACTTGTTTGGGATCGTACTTATAAA
TCTTTCAAAAATAGTTAGGATTAGTTAATTTTCAATTCATTTATTTTTTG
TGTCCTAAGTTCCTTTTCAATTTTGAGTTTGATTTTTCAATGCTATTTAT
TTATTTCAAATTTCTAAAATTCATTTTGGTATGTTTAAAATCGGAATATC
GAAAAGGTTTTGTTCTTACAACAACAGAGGATATTTTGGTTTGAATGTTT
TTGAGAAAGGAAGTTTTCAAGCATTATAATTTACCATTTTAATTTAAGCA
TTTGAAACAAAAAAGCCTGAACTCTTAATCGAAATTGAACTAAAATGCTC
TTTTGTAATTGTTGAAAGTCATTTTTGAGTGGAACACTTTCTTAATAAAG
TTCACGTTTTCTTAAAAAAAAGATCATGAAAATGAAAGATGAAGAAAAAA
TCACATTCTGGTAGAATTGTTTACCTCGTTGGAACTAATTTTTGCGGGTT
TTAATTTTAGCGTTTATCGCGGTTTTTCGTCAAAACCGCAAAAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071561-exon-scaffold_61-1575043694:24405..24491 | TCONS_00071561-exon-scaffold_61-1575043694:24405..24491 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1575043694:24238..24371 | TCONS_00071561-exon-scaffold_61-1575043694:24238..24371 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1575043694:21693..22515 | TCONS_00071561-exon-scaffold_61-1575043694:21693..22515 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1510915933:24405..24491 | TCONS_00071561-exon-scaffold_61-1510915933:24405..24491 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1510915933:24238..24371 | TCONS_00071561-exon-scaffold_61-1510915933:24238..24371 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1510915933:21693..22515 | TCONS_00071561-exon-scaffold_61-1510915933:21693..22515 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1491911889:24405..24491 | TCONS_00071561-exon-scaffold_61-1491911889:24405..24491 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1491911889:24238..24371 | TCONS_00071561-exon-scaffold_61-1491911889:24238..24371 | Clytia hemisphaerica | exon |
| TCONS_00071561-exon-scaffold_61-1491911889:21693..22515 | TCONS_00071561-exon-scaffold_61-1491911889:21693..22515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:21693..24491 - |
Blast
The following BLAST results are available for this feature:
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