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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071560 ID=TCONS_00071560|Name=TCONS_00071560|organism=Clytia hemisphaerica|type=transcript|length=1118bp
TCCGGGCCCAGTGGGTGAAAACCTTGCCCAAATCCTCGAGGAGGCAGAAG
CTGAGGTCAACAGTGAGCAGCAAAGCAGAAGAAGCAGGAGAGGAGGTTGG
AGAAGAACCTGTAGGAGCAGGAGAGGAGATCGGAGAAGAACCGGTAGGAG
CAGGAGAGGAGGTGTTACCAGCTATAGCTCTTCCCACAAGGGGCCGCCCA
AGATGGTTATAAaatgagaagagaaaaatagttCAAGGAAAGGCTCGTCA
TATTGGAAAAAGAACGAAGACTCACGAAAGTCTGGCCAATGATAGGCACT
TACCCTTGACCAAGGGACGGATCAAAGAAATGAAAGTGGTGGAGTTGAGG
GAAGAGCTGCGAAGAAGGAATCTACCGATGACTGGGCTTAAGTTGGTCAT
CATTGAAAGGTTGCTGACCTACTGGAGAGAGAGCGAGATGGAGGAGGAGG
AACACGAAGAAAGTAAAAGGGAGAAGAGATTTTAATGATAAAGATGGTGG
AGGTGAAGGAGAGCTCAGAAGAATACATTTGAGAAGCAGTGGGCTGAAAG
CGCAGCTAATCGAATTATTGCTGGCCTATAAGTCTTGTTTGCTCACTTGT
TTGGGATCGTACttataaatctttcaaaaatagttAGGATTAGttaattt
tcaattcatttattttttgtgtcctaagttccttttcaattttgagtttg
atttttcaatgctatttatttatttcaaatttctaaaattcaTTTTGGTA
TGTTTAAAATCGGAATATCGAAAAGGTTTTGTTCTTACAACAACAGAGGA
TATtttggtttgaatgtttttgagaaaGGAAGTTTTCAAGCATTATAATT
TACCATTTTAATTTAAgcatttgaaacaaaaaagccTGAACTCTTAATCG
AAATTGAACTAAAATGCTCTTTTGTAATTGTTGAAAGTCATTTTTGAGTG
GAACACTTTCTTAATAAAGTtcacgttttcttaaaaaaaagatcatgaaa
atgaaagatgaagaaaaaatcACATTCTGGTAGAATTGTTTACCTcgttg
gaactaatttttgcgggttttaattttagcgtttatcgcggtttttcgtc
aaaaccgcaaaaattaat Run BLAST on NCBI transcript from alignment at scaffold_61:21693..24007- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071560 ID=TCONS_00071560|Name=TCONS_00071560|organism=Clytia hemisphaerica|type=transcript|length=2315bp|location=Sequence derived from alignment at scaffold_61:21693..24007- (Clytia hemisphaerica)
TCCGGGCCCAGTGGTACGTCCGTTTAATTTAATTCTTATTATTTTTTGTT
TGATATTTTTTCAAATTACAAAAAGTAAGTCTCAACCGTGTCCATGGTTC
AAAGTTTAAATCAAAGTTTAATGAAGGCAATGTAGAAACAAAAAAATAGG
AAAAACTAATGAACAGATTTTTAACAGTCCAAAATTCTTTCGAAAAATGA
GACTAATCATATTTAGCAAACTGTAATTCTAAGTCTTTGTACAAAAAAAA
TAGGAAAACTAAGGAACAAATTTTTAACAAAGTCCAAAAAACCCTATTTT
TGGGCATTTTAAGGCCCTAATTAGCTCAATTTTTTCTTTCGAAAATGGGC
CTCCATCACATTTTTCTAATCACCATTTTGCACCTTTGTACCGAAAATCA
CAAAACTCCTATGATTCAATCCTGAGAAAAGTTGGTAACAGATGAACAGA
CGGACGAACACAGGCTAATTTATAGGACCTCCAGGTAGGTCCAAAAATGA
AATAAAGTATAAAAGTGTTACCCATTCAAAGAAATAATTTACAAATGCTT
TGCTAAACTTAACACATTAAACCCACTGACAGAAAAGTTTTTTTCGAAAC
CGTTTGGGCAGCGACAATACGAGTATCCAGAATAGCAAACTTCCACAATG
CTCCTCCGCTTAAACAAATAAACGAAAGGGAAAATCTCTCGGAATTTTGT
GAGTCTGGAAGCCAACTTGGATTACAATAACAAACCAGAAAGCGTGATGC
GAAATCCATAAAAAAGACTACTTTCTGAGATCTTTTAAAACCCAAGAAAT
TGAGTCACAGTTTAAGAAAAACGATTAAAATTTTGGGTAAGGAAAAATGA
AGTCTTCTATTCTCTGTAGGTTCAGTAGTGAAGTATCTCAATCTTGGTAA
CCATCTGATAACCCCTTTAAGATATATGCTAAGGAGTTTTAGTTAAAACA
AATAAAAGGGTGCTTGCTTGTTGTGGACAGAATTAGTAGAATTTTTGGCA
ACTAAAAAAATCATTACATTATCACATCACTTAAGATCAATTATCACATC
ACGTAAGATCAATAATCATCAAGAATTTTGTTTCGGTTTAGGGTGAAAAC
CTTGCCCAAATCCTCGAGGAGGCAGAAGCTGAGGTCAACAGTGAGCAGGT
TAGTATTCTTACTTTAAGTACTACATCGTCAGTGAATCATTTATAAAGCA
GTGTAATTTTAACTTTAATTGAATTGAGAAATGTAAAGAATATTGACAAC
CATATTTATTTTCATAGCAAAGCAGAAGAAGCAGGAGAGGAGGTTGGAGA
AGAACCTGTAGGAGCAGGAGAGGAGATCGGAGAAGAACCGGTAGGAGCAG
GAGAGGAGGTGTTACCAGCTATAGCTCTTCCCACAAGGGGCCGCCCAAGA
TGGTTATAAAATGAGAAGAGAAAAATAGTTCAAGGAAAGGCTCGTCATAT
TGGAAAAAGAACGAAGACTCACGAAAGTCTGGCCAATGATAGGCACTTAC
CCTTGACCAAGGGACGGATCAAAGAAATGAAAGTGGTGGAGTTGAGGGAA
GAGCTGCGAAGAAGGAATCTACCGATGACTGGGCTTAAGTTGGTCATCAT
TGAAAGGTTGCTGACCTACTGGAGAGAGAGCGAGATGGAGGAGGAGGAAC
ACGAAGAAAGTAAAAGGGAGAAGAGATTTTAATGATAAAGATGGTGGAGG
TGAAGGAGAGCTCAGAAGAATACATTTGAGAAGCAGTGGGCTGAAAGCGC
AGCTAATCGAATTATTGCTGGCCTATAAGTCTTGTTTGCTCACTTGTTTG
GGATCGTACTTATAAATCTTTCAAAAATAGTTAGGATTAGTTAATTTTCA
ATTCATTTATTTTTTGTGTCCTAAGTTCCTTTTCAATTTTGAGTTTGATT
TTTCAATGCTATTTATTTATTTCAAATTTCTAAAATTCATTTTGGTATGT
TTAAAATCGGAATATCGAAAAGGTTTTGTTCTTACAACAACAGAGGATAT
TTTGGTTTGAATGTTTTTGAGAAAGGAAGTTTTCAAGCATTATAATTTAC
CATTTTAATTTAAGCATTTGAAACAAAAAAGCCTGAACTCTTAATCGAAA
TTGAACTAAAATGCTCTTTTGTAATTGTTGAAAGTCATTTTTGAGTGGAA
CACTTTCTTAATAAAGTTCACGTTTTCTTAAAAAAAAGATCATGAAAATG
AAAGATGAAGAAAAAATCACATTCTGGTAGAATTGTTTACCTCGTTGGAA
CTAATTTTTGCGGGTTTTAATTTTAGCGTTTATCGCGGTTTTTCGTCAAA
ACCGCAAAAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071560-exon-scaffold_61-1575043694:23995..24007 | TCONS_00071560-exon-scaffold_61-1575043694:23995..24007 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1575043694:22860..22916 | TCONS_00071560-exon-scaffold_61-1575043694:22860..22916 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1575043694:21693..22740 | TCONS_00071560-exon-scaffold_61-1575043694:21693..22740 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1510915933:23995..24007 | TCONS_00071560-exon-scaffold_61-1510915933:23995..24007 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1510915933:22860..22916 | TCONS_00071560-exon-scaffold_61-1510915933:22860..22916 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1510915933:21693..22740 | TCONS_00071560-exon-scaffold_61-1510915933:21693..22740 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1491911889:23995..24007 | TCONS_00071560-exon-scaffold_61-1491911889:23995..24007 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1491911889:22860..22916 | TCONS_00071560-exon-scaffold_61-1491911889:22860..22916 | Clytia hemisphaerica | exon |
| TCONS_00071560-exon-scaffold_61-1491911889:21693..22740 | TCONS_00071560-exon-scaffold_61-1491911889:21693..22740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:21693..24007 - |
Blast
The following BLAST results are available for this feature:
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