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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071559 ID=TCONS_00071559|Name=TCONS_00071559|organism=Clytia hemisphaerica|type=transcript|length=4146bp
tttttgctgattttgtatgattttttctTGTCGCTCTATAATGACAAGAA
GAAACAATAATCAAAATTAAAGCAGTTGTGTAGACCTCTTTACCAATTAA
ACTTCTTAACTTGGAAACACCTTAAGAACAATAGctacctgaaacgcttt
ctcgcatctccaccccatttttctttctaccaataaaaaatagaactcac
ttttgtccctgggaccgGGAAAGGCCCCTTCGCAAGCGGTGgaccaataa
cttttgattgagttgTTTTggagcaaatgaaaaaaaacaccataAAATCG
AAAAGGCTTGGAACACGAGAAGTATttttgcgttggtgcaatgcaacatg
ctccatctcaCCAACACTAgcaaaaaaagtgcgtgtctagtggtttcttt
ttggacctacctccgggtaccccggtggaggttctataaatcaacccatg
tccgttcgtccgtccgtctgttaccagcttttctcaggattggctcatta
gttttttctgatttttttgcacaatgatgcaaaatggcaatgcccagaac
gtgacggagcccgatttttgagaagaaaattatttgggcaaatttgggcc
aaaaactacctagtttttttggactttgtgcaaaatcctgtcattatttt
tttctgattttttgtacaaagatggagggcaagattctctaaagaatggc
tgaagtggtttttcccggaaaattcttattcgccgtattttgggaaattc
cttttaaccaaataagaaaatatagcttttctcaatgttgactcataatt
tttttctgattttttgcacaatgatgcaaagtGGCAATGCCCAAagtgtg
acggagccagatttttaaggaaaaatcttttgggctaatttgggccaaaa
acagcttaaaaggttttttgggcctgaatggtttaagtgattttcgtatt
tgggggaatttctttttaccattttacattattcaacacacaagctttat
ttttccattctgaatttttgtacaattattgtcacttttttcttattttc
atctgatgttaatcattaggtaggtccattcagcatgttgcttgttttgt
tTCATGATACAAAAAGtaagggaaatacccaaaagacgaGCGAAATACCT
AAAAGACACTTGTATAGACAAAAGACATACGATACACACTGTAAATGCAG
GACAACTATTTTTGCAGAGTAAAATCCTTATAATTTATGCCAAAGTTTAT
CACTTACATACTTATTATTTCTATctaaaaacctattcaatcatccagtt
gtttcaaaattcaaatttttccttcCGTCCTATAACTTTGTTATTTGGAA
ATGAATAATACATTCAATAATAGTGTTGTTCTTGTGTCGAATTTCATTCC
TTGAGAAGATAATGTGTTCTTCCAGCATAGAAATGAATTGTCCTTGTAGT
CATCTACTGAATTGAAGTTTCTTTCTAAAGTGTCATTGAATGAGTACCTT
AATGATGTGTATAACAACATATTTATGTTGTGTACAACAACATATTTGGA
GTCAAATCTTTGTAAAAAATACTGACCTGCTCTTCTGATTCCGCCTCCTC
GAGGATTGGGGCTGAGTTTTCAGGCTAAAAAATAGAATTTGAAATATGTG
TTTTGGTCGATTTGATTGAGGATTTCACgttgtaataaatttttaattta
aactaaaatggtaaTAGTTAAGAGAAATTCATTTCCTagtaactttaaaa
aacttGCCTTGTCAAATTATCTCACAACGAAAGTCAAAATAATGAAAGCA
AAGTCTTAGGAATAGATTATTTATATGGACAAAACTAAGATAACAGCAGa
cgtctatcaccatatttctcTAATACCTTGCCTGGAAGATACTAAAGGTT
GCTTTTCTTACACTTCAAAAAATTTATGTTCTGTTTTAGTTCGTGTAGTT
GTCCAAGTGTTGATCTTATAAAGCCTCATACTGAATAAAGAAGTTTAAAA
GTAAAGGGTTTTTCTCACTAAGAATCTGAGTAATATATAACAATGgacat
ttaaaatattttcttcttgaGGTGATACTTGATCATTTTCAGAAAATACC
GGTTAGGCCAAAAAAACCGCCACGTAACTTTCCAATCAataataaagatt
ttaaagcCAATTTCGTTTGAAAGGAGAAAAAATGTTCGAAACGTAataga
aaacattcgaataaagtaaaaaaaatattttggtgcGAAACCGCTGGGAA
CTCTTCTTGCTTTTGGGAAAATTTATGCATTTTTTATCTCAGCCTAAAAT
ACATTTTATCAAATGTTATCTAAGAAAGAAAGATATAACGCAAAGATAAT
TTTATCTGACATAAGTTTTCTTCCTCCCTATAACTTGGTTGTTTGTAAAT
CACTCTGTATTTGCCGAGGTACGCGATATCATTGGCGATATCCTGGCGTA
CCAGCACATTATTATTCTCTGTCATACTGTAGTAATTGTTGGAGGACATT
GTAGTGACTGTATTTGCCGAGGTACGCGATATCATTGACGATATCCTGGC
GTACCAGCACATTATTATTCTGTCATACTGTAGTAATTGTTGGAGGACAT
TGTAGTGACTCTATTTCAGGGACTTATGCATTTTTCCATCcaattctttt
ttttgcacATGGACTCTGATCGCCAACAGCTCTATAATGACAAGAAGTTA
AAGGTCTCTtcatttctctctttttttgtcCTGAGGAATATGATTGGTTT
TCATCGgtgaaatttttatcatttaaatTAGAAGTAAACATTTATTTGTC
AACGAGTAAAAAATACATTACTGTCAGCTCCACCCGAACGATTATCAATT
GTAAAATGATTAACTTCTCATTCAAATTAGACTTCTTTTGTAATGttctg
aaaattgaaatccTATAACGGGAGAAAGATGGATTATGAATTCTGCGCCA
TCTCGTGTTCAAGAATTTACAGATTGTGCATAAACCAGTCTCCTAAGCGT
CAGAAGCTGTTTAGCTAGAAGACAATGGTAAATTGAAATCACAATGGCTT
TCTTCTTGTATTTTGGGGAAACTTTGCCCTAGAAAACCTTTCAATGTCCA
TGTGATGTCGATTCTATCGGGAATATTTTCATCCCACCTTACTGAGAACA
TTCTTTGGTCTACTTGTCAGCGCTCGGTTGgacaatttgaaaatttgttt
taggCAGCTCAATTATATCGGAATCGATTACTAATAGTGGAAAttcctga
aaaagaaattggagACTAGTTTTTGGTAACATTTGTCCTTCATTATGTTA
CACCCTTGTCTTACGAACCCGGCGAAAACTTTTCCCACGATTTCAATAGG
GATAGAAATCTTATCTTATCCCGAACACCtattaccctgggtttacaatt
gGGTTTTCCTTTATACCGAGCTCCTTTCACCCTGGGTTTACATCTTGCCA
TCTCAATCTATAGTCTCTACAAAATAATAGATTTGACCCCTAACTTCAGG
AATTAAATTCCAGCGCAAAACTTTCAATTGGCTTttgtgtaaaaaaatat
tttctatgaGGTAATGTACAGTATTCTAAAATGTCTTGGCAAATTTCTGT
TACCATATAATCTAAAAAAGCTTACTGgtgtttttgttccaaaaattcCC
TTTCATGAAGGCAAAAATTTCTGACATTGGAAGTTTAGTCATCCTGAAAG
AAGGTGGTGCTTTCTTTCAAGGGTGTTGGAGTGTCTCACTTTTTGTATCT
TTCCTAAGGATCATACTGATAATTCTGTTGAagatcttttttaattttaa
ttttcatgaGCAAATGATACAGTAGCCTAATATTTACAGTGATAGGAGAT
ATATTCTTTGATAAATTTGTATCTTTTCATATATTTCTAGGTTTagaagt
ttgattttttgttattttgtccTACAGTATCATTGGAAATAGTGTTTTTA
TAGTTGATTTCGTAATTGTTGTCTTTTTATTTCACCGCTGTCTCAGTGAC
GCGTGAGAAATTTTAGTTGTGGGATAAAGACTAAGAAACGAAATGCtgcc
attcaaatttctatAATCAGAGATATACTCAAATTATTCATTTGTCGTCA
TCCCAGCATGATGGATATGAACAATTCACTGCAATTCAGTGTTTTT Run BLAST on NCBI transcript from alignment at scaffold_61:35560..39808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071559 ID=TCONS_00071559|Name=TCONS_00071559|organism=Clytia hemisphaerica|type=transcript|length=4249bp|location=Sequence derived from alignment at scaffold_61:35560..39808+ (Clytia hemisphaerica)
tttttgctgattttgtatgattttttctTGTCGCTCTATAATGACAAGAA
GAAACAATAATCAAAATTAAAGCAGTTGTGTAGACCTCTTTACCAATTAA
ACTTCTTAACTTGGAAACACCTTAAGAACAATAGctacctgaaacgcttt
ctcgcatctccaccccatttttctttctaccaataaaaaatagaactcac
ttttgtccctgggaccgGGAAAGGCCCCTTCGCAAGCGGTGgaccaataa
cttttgattgagttgTTTTggagcaaatgaaaaaaaacaccataAAATCG
AAAAGGCTTGGAACACGAGAAGTATttttgcgttggtgcaatgcaacatg
ctccatctcaCCAACACTAgcaaaaaaagtgcgtgtctagtggtttcttt
ttggacctacctccgggtaccccggtggaggttctataaatcaacccatg
tccgttcgtccgtccgtctgttaccagcttttctcaggattggctcatta
gttttttctgatttttttgcacaatgatgcaaaatggcaatgcccagaac
gtgacggagcccgatttttgagaagaaaattatttgggcaaatttgggcc
aaaaactacctagtttttttggactttgtgcaaaatcctgtcattatttt
tttctgattttttgtacaaagatggagggcaagattctctaaagaatggc
tgaagtggtttttcccggaaaattcttattcgccgtattttgggaaattc
cttttaaccaaataagaaaatatagcttttctcaatgttgactcataatt
tttttctgattttttgcacaatgatgcaaagtGGCAATGCCCAAagtgtg
acggagccagatttttaaggaaaaatcttttgggctaatttgggccaaaa
acagcttaaaaggttttttgggcctgaatggtttaagtgattttcgtatt
tgggggaatttctttttaccattttacattattcaacacacaagctttat
ttttccattctgaatttttgtacaattattgtcacttttttcttattttc
atctgatgttaatcattaggtaggtccattcagcatgttgcttgttttgt
tTCATGATACAAAAAGtaagggaaatacccaaaagacgaGCGAAATACCT
AAAAGACACTTGTATAGACAAAAGACATACGATACACACTGTAAATGCAG
GACAACTATTTTTGCAGAGTAAAATCCTTATAATTTATGCCAAAGTTTAT
CACTTACATACTTATTATTTCTATctaaaaacctattcaatcatccagtt
gtttcaaaattcaaatttttccttcCGTCCTATAACTTTGTTATTTGGAA
ATGAATAATACATTCAATAATAGTGTTGTTCTTGTGTCGAATTTCATTCC
TTGAGAAGATAATGTGTTCTTCCAGCATAGAAATGAATTGTCCTTGTAGT
CATCTACTGAATTGAAGTTTCTTTCTAAAGTGTCATTGAATGAGTACCTT
AATGATGTGTATAACAACATATTTATGTTGTGTACAACAACATATTTGGA
GTCAAATCTTTGTAAAAAATACTGACCTGCTCTTCTGATTCCGCCTCCTC
GAGGATTGGGGCTGAGTTTTCAGGCTAAAAAATAGAATTTGAAATATGTG
TTTTGGTCGATTTGATTGAGGATTTCACgttgtaataaatttttaattta
aactaaaatggtaaTAGTTAAGAGAAATTCATTTCCTagtaactttaaaa
aacttGCCTTGTCAAATTATCTCACAACGAAAGTCAAAATAATGAAAGCA
AAGTCTTAGGAATAGATTATTTATATGGACAAAACTAAGATAACAGCAGa
cgtctatcaccatatttctcTAATACCTTGCCTGGAAGATACTAAAGGTT
GCTTTTCTTACACTTCAAAAAATTTATGTTCTGTTTTAGTTCGTGTAGTT
GTCCAAGTGTTGATCTTATAAAGCCTCATACTGAATAAAGAAGTTTAAAA
GTAAAGGGTTTTTCTCACTAAGAATCTGAGTAATATATAACAATGgacat
ttaaaatattttcttcttgaGGTGATACTTGATCATTTTCAGAAAATACC
GGTTAGGCCAAAAAAACCGCCACGTAACTTTCCAATCAataataaagatt
ttaaagcCAATTTCGTTTGAAAGGAGAAAAAATGTTCGAAACGTAataga
aaacattcgaataaagtaaaaaaaatattttggtgcGAAACCGCTGGGAA
CTCTTCTTGCTTTTGGGAAAATTTATGCATTTTTTATCTCAGCCTAAAAT
ACATTTTATCAAATGTTATCTAAGAAAGAAAGATATAACGCAAAGATAAT
TTTATCTGACATAAGTTTTCTTCCTCCCTATAACTTGGTTGTTTGTAAAT
CACTCTGTATTTGCCGAGGTACGCGATATCATTGGCGATATCCTGGCGTA
CCAGCACATTATTATTCTCTGTCATACTGTAGTAATTGTTGGAGGACATT
GTAGTGACTGTATTTGCCGAGGTATGCGATATCATTGACGATATCCTGGC
GTACCAGCACATTATTATTCTCTGTCATACTGTAGTAATTGTTGGAGGAT
ATTGTAGTGACTGTATTTGCCGAGGTACGCGATATCATTGACGATATCCT
GGCGTACCAGCACATTATTATTCTGTCATACTGTAGTAATTGTTGGAGGA
CATTGTAGTGACTCTATTTCAGGGACTTATGCATTTTTCCATCcaattct
tttttttgcacATGGACTCTGATCGCCAACAGCTCTATAATGACAAGAAG
TTAAAGGTCTCTtcatttctctctttttttgtcCTGAGGAATATGATTGG
TTTTCATCGgtgaaatttttatcatttaaatTAGAAGTAAACATTTATTT
GTCAACGAGTAAAAAATACATTACTGTCAGCTCCACCCGAACGATTATCA
ATTGTAAAATGATTAACTTCTCATTCAAATTAGACTTCTTTTGTAATGtt
ctgaaaattgaaatccTATAACGGGAGAAAGATGGATTATGAATTCTGCG
CCATCTCGTGTTCAAGAATTTACAGATTGTGCATAAACCAGTCTCCTAAG
CGTCAGAAGCTGTTTAGCTAGAAGACAATGGTAAATTGAAATCACAATGG
CTTTCTTCTTGTATTTTGGGGAAACTTTGCCCTAGAAAACCTTTCAATGT
CCATGTGATGTCGATTCTATCGGGAATATTTTCATCCCACCTTACTGAGA
ACATTCTTTGGTCTACTTGTCAGCGCTCGGTTGgacaatttgaaaatttg
ttttaggCAGCTCAATTATATCGGAATCGATTACTAATAGTGGAAAttcc
tgaaaaagaaattggagACTAGTTTTTGGTAACATTTGTCCTTCATTATG
TTACACCCTTGTCTTACGAACCCGGCGAAAACTTTTCCCACGATTTCAAT
AGGGATAGAAATCTTATCTTATCCCGAACACCtattaccctgggtttaca
attgGGTTTTCCTTTATACCGAGCTCCTTTCACCCTGGGTTTACATCTTG
CCATCTCAATCTATAGTCTCTACAAAATAATAGATTTGACCCCTAACTTC
AGGAATTAAATTCCAGCGCAAAACTTTCAATTGGCTTttgtgtaaaaaaa
tattttctatgaGGTAATGTACAGTATTCTAAAATGTCTTGGCAAATTTC
TGTTACCATATAATCTAAAAAAGCTTACTGgtgtttttgttccaaaaatt
cCCTTTCATGAAGGCAAAAATTTCTGACATTGGAAGTTTAGTCATCCTGA
AAGAAGGTGGTGCTTTCTTTCAAGGGTGTTGGAGTGTCTCACTTTTTGTA
TCTTTCCTAAGGATCATACTGATAATTCTGTTGAagatcttttttaattt
taattttcatgaGCAAATGATACAGTAGCCTAATATTTACAGTGATAGGA
GATATATTCTTTGATAAATTTGTATCTTTTCATATATTTCTAGGTTTaga
agtttgattttttgttattttgtccTACAGTATCATTGGAAATAGTGTTT
TTATAGTTGATTTCGTAATTGTTGTCTTTTTATTTCACCGCTGTCTCAGT
GACGCGTGAGAAATTTTAGTTGTGGGATAAAGACTAAGAAACGAAATGCt
gccattcaaatttctatAATCAGAGATATACTCAAATTATTCATTTGTCG
TCATCCCAGCATGATGGATATGAACAATTCACTGCAATTCAGTGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071559-exon-scaffold_61-1491911889:35560..38080 | TCONS_00071559-exon-scaffold_61-1491911889:35560..38080 | Clytia hemisphaerica | exon |
| TCONS_00071559-exon-scaffold_61-1510915933:35560..38080 | TCONS_00071559-exon-scaffold_61-1510915933:35560..38080 | Clytia hemisphaerica | exon |
| TCONS_00071559-exon-scaffold_61-1575043694:35560..38080 | TCONS_00071559-exon-scaffold_61-1575043694:35560..38080 | Clytia hemisphaerica | exon |
| TCONS_00071559-exon-scaffold_61-1491911889:38184..39808 | TCONS_00071559-exon-scaffold_61-1491911889:38184..39808 | Clytia hemisphaerica | exon |
| TCONS_00071559-exon-scaffold_61-1510915933:38184..39808 | TCONS_00071559-exon-scaffold_61-1510915933:38184..39808 | Clytia hemisphaerica | exon |
| TCONS_00071559-exon-scaffold_61-1575043694:38184..39808 | TCONS_00071559-exon-scaffold_61-1575043694:38184..39808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_61 | supercontig | scaffold_61:35560..39808 + |
Blast
The following BLAST results are available for this feature:
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