TCONS_00071556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071556
Unique NameTCONS_00071556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071556 ID=TCONS_00071556|Name=TCONS_00071556|organism=Clytia hemisphaerica|type=transcript|length=2047bp
CACAAATTCTTCATCTACCAaagaactttgaaaaaaaatgaaataaacgt
CCAAGCTTTCCACATGTCCACTTAAAATCACATGACTGAATACTTGCATT
TGATTGGTTAGTGATATTGTATaaattaaatcttcaaaatttacattaac
actacagaatgttagtgagacaCAGTGGACTAGACTCAATGGacgcaatg
gactgtgttcgaacCCAAGTACTACCAGGCAgagtgttagggaaatatga
tGACAGAAATTACGCTTGAttctgaaaagaaagttaagaaaaaGAATGTT
AAAACACtacaaaaaaacaccaaaattaacaTACATCCAGTTAAAAGACT
ATAAAAGATTTAAAGTGTGTTCTAAATAAAGATCTTCAGCTATAGCGTTA
TTGATCTTTTATACCATTGTCCAGTTGAGGGGACAAATGTTTTAGTTCAA
TATACGGAAAGATACGAATTGCAGAACTTCGAATTAGTTAGTGAGAGATT
TGACTTATCCTCAATGATTCAACTGCACAAGGACGCCTTCCGATTTCTCT
AATCATTTGTTTAGAGAGATGTTCACCTCCTCGCCATTATCTTTGTGTCC
TCTTCGACGTCTGAAGAAGATAGCCAACCCAACCAATCCAATCAAAACTA
ATATCGCTAACACCACCATTAAGATGATGAAACCAGTATCTGGAGTTGAT
AATTGACATTGTTGACCATGATAACCTTCGTTGCATTGGCATGTATATCC
CATTGAAATGTTACTTTTCTTACAAATTCCATCATTCTGACAGGGGTTAT
CAAAATAgcaaatatctttcatttgacaGCGCTCACCAGAATATCCTACA
CGACAATCgcatttgaatatattttggATTGGCACACATATACTATTGGT
TATCTCTTGGCATGGTTTAAATCTCAGGTTAAATGAACAGGCGTTTTTGA
ATTGACAAAATTCTCCATGGTTATTTTGACTGCAGGAACAATTGTAATTG
AATTGGTCAACAACTTGACATGTTGCATTGTTTTGGCATTCATTGACAGA
GCAGGAACTAcaatttaatttgttcttgTGATAGAAATCTGCCAATTCAG
TACCATTGCATTTACCCCCAATTCTTCCATCATGGtaaatttcactgaaa
taatTAATTGTATCATACATAACACAATCACATATCAATGGGTTTTCTTT
GAGTTCCAAATAATCAGGAACAACTGAACCAAACCAATCTCTTCGTGCTG
TTGTTATCTTATTGAACTGCAAGTAGATATAGCTCAAAGATGGAAGATCA
CCAAAGACTCCAGTTTCAACAGTCGTTATATCATTACCAGTTAAGAATAA
TTCTCGTAACTTAGCTAATCCGGTAAACGTACCCTTTCGCAGAGTCGTCA
ATTTATTATGTCCTACGTACAGATATTCAAGTTGTGAAAGATTCTGAAAA
ACATCAGGCTCCAAATTTTCTATACCATTTCTGCGAAGGGATATAGCTAT
GATAGAATTGTACCCTTCAAAGTCcttttgtttaattttattaATATTAA
TGTCATCTAGATCAATAATGAGGATGCTTGGTATGTAAAGTGATATGTTT
GCAGGCAATCTGGTCAGTTGGTTTTCGTTTAATGTGATTCGATCAAGTTT
agtgaaattaacaaaaagttcaGCTTGAAATTCGGTGATTAGGTTTCTGC
TTAGATCTAATTCCACAGTTCTTTTTGTATCCAATTGTGATGCAACATCC
GGAAGATCTTTGTTGGTGATATTTAGGTCTTTACAATGCACTTGGACCTC
ATAATTACCTTTCCAATCATGTTTCCAATAACACTTACATTTTGTTGGAC
AAGTTTTTGAACTTGATGCAAAACTGGAAACAATGCAAGCCAATAAAATA
AGAAGATGGTGGAATAGcatattcataattttgatCGCCAGTTATTTTTC
TTTAGGTTTTTCCTGAAAATGAGAATAAAGCAGAATAAAGTGATTTTAGT
TTGTGTTATGCGCAAAATATGTTATTATTAACGGCTTTTTTTGGCag
Run BLAST on NCBI

protein sequence of TCONS_00071556-protein

>TCONS_00071556-protein ID=TCONS_00071556-protein|Name=TCONS_00071556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MNMLFHHLLILLACIVSSFASSSKTCPTKCKCYWKHDWKGNYEVQVHCKD
LNITNKDLPDVASQLDTKRTVELDLSRNLITEFQAELFVNFTKLDRITLN
ENQLTRLPANISLYIPSILIIDLDDININKIKQKDFEGYNSIIAISLRRN
GIENLEPDVFQNLSQLEYLYVGHNKLTTLRKGTFTGLAKLRELFLTGNDI
TTVETGVFGDLPSLSYIYLQFNKITTARRDWFGSVVPDYLELKENPLICD
CVMYDTINYFSEIYHDGRIGGKCNGTELADFYHKNKLNCSSCSVNECQNN
ATCQVVDQFNYNCSCSQNNHGEFCQFKNACSFNLRFKPCQEITNSICVPI
QNIFKCDCRVGYSGERCQMKDICYFDNPCQNDGICKKSNISMGYTCQCNE
GYHGQQCQLSTPDTGFIILMVVLAILVLIGLVGLAIFFRRRRGHKDNGEE
VNISLNK
Run BLAST on NCBI

transcript from alignment at scaffold_60:1751469..1753515

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071556 ID=TCONS_00071556|Name=TCONS_00071556|organism=Clytia hemisphaerica|type=transcript|length=2047bp|location=Sequence derived from alignment at scaffold_60:1751469..1753515 (Clytia hemisphaerica)
ctGCCAAAAAAAGCCGTTAATAATAACATATTTTGCGCATAACACAAACT
AAAATCACTTTATTCTGCTTTATTCTCATTTTCAGGAAAAACCTAAAGAA
AAATAACTGGCGatcaaaattatgaatatgCTATTCCACCATCTTCTTAT
TTTATTGGCTTGCATTGTTTCCAGTTTTGCATCAAGTTCAAAAACTTGTC
CAACAAAATGTAAGTGTTATTGGAAACATGATTGGAAAGGTAATTATGAG
GTCCAAGTGCATTGTAAAGACCTAAATATCACCAACAAAGATCTTCCGGA
TGTTGCATCACAATTGGATACAAAAAGAACTGTGGAATTAGATCTAAGCA
GAAACCTAATCACCGAATTTCAAGCtgaactttttgttaatttcactAAA
CTTGATCGAATCACATTAAACGAAAACCAACTGACCAGATTGCCTGCAAA
CATATCACTTTACATACCAAGCATCCTCATTATTGATCTAGATGACATTA
ATATtaataaaattaaacaaaagGACTTTGAAGGGTACAATTCTATCATA
GCTATATCCCTTCGCAGAAATGGTATAGAAAATTTGGAGCCTGATGTTTT
TCAGAATCTTTCACAACTTGAATATCTGTACGTAGGACATAATAAATTGA
CGACTCTGCGAAAGGGTACGTTTACCGGATTAGCTAAGTTACGAGAATTA
TTCTTAACTGGTAATGATATAACGACTGTTGAAACTGGAGTCTTTGGTGA
TCTTCCATCTTTGAGCTATATCTACTTGCAGTTCAATAAGATAACAACAG
CACGAAGAGATTGGTTTGGTTCAGTTGTTCCTGATTATTTGGAACTCAAA
GAAAACCCATTGATATGTGATTGTGTTATGTATGATACAATTAattattt
cagtgaaatttaCCATGATGGAAGAATTGGGGGTAAATGCAATGGTACTG
AATTGGCAGATTTCTATCAcaagaacaaattaaattgTAGTTCCTGCTCT
GTCAATGAATGCCAAAACAATGCAACATGTCAAGTTGTTGACCAATTCAA
TTACAATTGTTCCTGCAGTCAAAATAACCATGGAGAATTTTGTCAATTCA
AAAACGCCTGTTCATTTAACCTGAGATTTAAACCATGCCAAGAGATAACC
AATAGTATATGTGTGCCAATccaaaatatattcaaatgcGATTGTCGTGT
AGGATATTCTGGTGAGCGCtgtcaaatgaaagatatttgcTATTTTGATA
ACCCCTGTCAGAATGATGGAATTTGTAAGAAAAGTAACATTTCAATGGGA
TATACATGCCAATGCAACGAAGGTTATCATGGTCAACAATGTCAATTATC
AACTCCAGATACTGGTTTCATCATCTTAATGGTGGTGTTAGCGATATTAG
TTTTGATTGGATTGGTTGGGTTGGCTATCTTCTTCAGACGTCGAAGAGGA
CACAAAGATAATGGCGAGGAGGTGAACATCTCTCTAAACAAATGATTAGA
GAAATCGGAAGGCGTCCTTGTGCAGTTGAATCATTGAGGATAAGTCAAAT
CTCTCACTAACTAATTCGAAGTTCTGCAATTCGTATCTTTCCGTATATTG
AACTAAAACATTTGTCCCCTCAACTGGACAATGGTATAAAAGATCAATAA
CGCTATAGCTGAAGATCTTTATTTAGAACACACTTTAAATCTTTTATAGT
CTTTTAACTGGATGTAtgttaattttggtgtttttttgtaGTGTTTTAAC
ATTCtttttcttaactttcttttcagaaTCAAGCGTAATTTCTGTCatca
tatttccctaacactcTGCCTGGTAGTACTTGGgttcgaacacagtccat
tgcgtCCATTGAGTCTAGTCCACTGtgtctcactaacattctgtagtgtt
aatgtaaattttgaagatttaatttATACAATATCACTAACCAATCAAAT
GCAAGTATTCAGTCATGTGATTTTAAGTGGACATGTGGAAAGCTTGGacg
tttatttcattttttttcaaagttcttTGGTAGATGAAGAATTTGTG

Coding sequence (CDS) from alignment at scaffold_60:1751469..1753515

>TCONS_00071556 ID=TCONS_00071556|Name=TCONS_00071556|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_60:1751469..1753515 (Clytia hemisphaerica)
atgaatatgCTATTCCACCATCTTCTTATTTTATTGGCTTGCATTGTTTC
CAGTTTTGCATCAAGTTCAAAAACTTGTCCAACAAAATGTAAGTGTTATT
GGAAACATGATTGGAAAGGTAATTATGAGGTCCAAGTGCATTGTAAAGAC
CTAAATATCACCAACAAAGATCTTCCGGATGTTGCATCACAATTGGATAC
AAAAAGAACTGTGGAATTAGATCTAAGCAGAAACCTAATCACCGAATTTC
AAGCtgaactttttgttaatttcactAAACTTGATCGAATCACATTAAAC
GAAAACCAACTGACCAGATTGCCTGCAAACATATCACTTTACATACCAAG
CATCCTCATTATTGATCTAGATGACATTAATATtaataaaattaaacaaa
agGACTTTGAAGGGTACAATTCTATCATAGCTATATCCCTTCGCAGAAAT
GGTATAGAAAATTTGGAGCCTGATGTTTTTCAGAATCTTTCACAACTTGA
ATATCTGTACGTAGGACATAATAAATTGACGACTCTGCGAAAGGGTACGT
TTACCGGATTAGCTAAGTTACGAGAATTATTCTTAACTGGTAATGATATA
ACGACTGTTGAAACTGGAGTCTTTGGTGATCTTCCATCTTTGAGCTATAT
CTACTTGCAGTTCAATAAGATAACAACAGCACGAAGAGATTGGTTTGGTT
CAGTTGTTCCTGATTATTTGGAACTCAAAGAAAACCCATTGATATGTGAT
TGTGTTATGTATGATACAATTAattatttcagtgaaatttaCCATGATGG
AAGAATTGGGGGTAAATGCAATGGTACTGAATTGGCAGATTTCTATCAca
agaacaaattaaattgTAGTTCCTGCTCTGTCAATGAATGCCAAAACAAT
GCAACATGTCAAGTTGTTGACCAATTCAATTACAATTGTTCCTGCAGTCA
AAATAACCATGGAGAATTTTGTCAATTCAAAAACGCCTGTTCATTTAACC
TGAGATTTAAACCATGCCAAGAGATAACCAATAGTATATGTGTGCCAATc
caaaatatattcaaatgcGATTGTCGTGTAGGATATTCTGGTGAGCGCtg
tcaaatgaaagatatttgcTATTTTGATAACCCCTGTCAGAATGATGGAA
TTTGTAAGAAAAGTAACATTTCAATGGGATATACATGCCAATGCAACGAA
GGTTATCATGGTCAACAATGTCAATTATCAACTCCAGATACTGGTTTCAT
CATCTTAATGGTGGTGTTAGCGATATTAGTTTTGATTGGATTGGTTGGGT
TGGCTATCTTCTTCAGACGTCGAAGAGGACACAAAGATAATGGCGAGGAG
GTGAACATCTCTCTAAACAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044457XLOC_044457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071556-proteinTCONS_00071556-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071556-exon-scaffold_60-1491911889:1751469..1753515TCONS_00071556-exon-scaffold_60-1491911889:1751469..1753515Clytia hemisphaericaexon
TCONS_00071556-exon-scaffold_60-1510915933:1751469..1753515TCONS_00071556-exon-scaffold_60-1510915933:1751469..1753515Clytia hemisphaericaexon
TCONS_00071556-exon-scaffold_60-1575043694:1751469..1753515TCONS_00071556-exon-scaffold_60-1575043694:1751469..1753515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1751469..1753515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.11048	5.7642	3.80469	4.34944	4.61899	2.54374	8.45322	9.19107	9.50707	8.60288	5.79885	4.94577	5.45335	6.55675	13.7348	19.2655	1.40404	6.31267	0.151175	0.566547	0.517657	0.560493	4.60276	3.86324	1.08697	1.22265	13.9221	4.58223	1.8599	2.5119
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071556 vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.002e-20
Identity = 91/333 (27.33%), Postives = 125/333 (37.54%), Query Frame = -2 
Query:  688 DFEGYNSIIAISLRRNGIENLEPDVFQNLSQLEYLYVGHNKLTTLRKGTFTGLAKLRELFLTGNDITTVETGVFGDLPSLSYIYLQFNKITTARRDWFGSVVPDYLELKENPLICDCVMYDTINYFSEIYHDGRIGGKCNGTELAD----------FYHKNKLN------CSSCSVNECQNNATCQVVDQFNYNCSCSQN------------------NHGEFCQFKNA--------CSFNLRFKPCQEIT----------NSICVPIQNIFKCDCRVGYSGERCQMK-DICYFD-NPCQNDGICKKSNISMGYTCQCNEGYHGQQCQLSTPD 1524
            +   Y  +  I L  N I  L    F N++QL  L + +N+L  +   TF GL  LR L L GNDI+ V  G F DL +LS                       +L +  NPL CDC M    ++    Y +  I       E+AD          F  +  ++      C+ C  N C+N+ TC       Y C+C                      HG  C  K          C+     + C+             NS CV   N + C C   Y+GE C+ K D C  D NPCQ+D  C  +    G+ C C  GY G+ C +   D
Sbjct:  772 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS-----------------------HLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILT--PKGFKCDCTPGYVGEHCDIDFDD 1079
The following BLAST results are available for this feature:
BLAST of TCONS_00071556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT22.002e-2027.33Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE... [more]
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