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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071555 ID=TCONS_00071555|Name=TCONS_00071555|organism=Clytia hemisphaerica|type=transcript|length=1174bp
aaaaaagggtgTGGTGGTGAAAGAAAATCCGCCACATTAAAGTGGGGTGA
TCCACCACACCTAAACATCGACAACCAACAATAACGATGTTCATGTAGAT
GTACTTGGCTGTGCTGATATGATGGTCATCTCACTACAACGGTTGCTGTT
AGCCAGAGGAACTCTTCTGCCACAGATTCCGGAGTTGATCATCTAAGTAC
CAACACTGGTGGTGTCGCGAGCTCCAGTTTGTCATGCCAAAAGCGAAGAA
ATTCAAACATTTGAACATTATTTGCAACTAGGCTCTCATTGAAAGACaat
cgaaacaaaaatattgatatttttctcgTCTCAGCATACGCCCCTGTTGG
AGTTGCAGATGTCGCTATCTGGGATTCTTTTCTTCAGAATCTTCATAGCT
GTATAAACGCTAAACGTCCCAAAGATATCTTAATTGTTGGTTGTGATACC
AATTCATCCCTCGGAATTACTTATGAGAGAACCGGTATCGAAATACCTTC
AGTGGGCAAATTTGGCCTACCACACAGCAACCATGCTGGTTTGAGATTTA
CAGCATTTTTAGAAATGAACAGTCTTGTTGCATGTAGTAcctattttcga
aaaaagaacTATGCCACATGGAGACACCCTCGTTCGAAGCTTCCACACCA
GATCGATCACATTTTAACActgaaaactgatttttgtcgaattattgatg
tttttgtttcaaaaccACTGCTAGATTCAGACCATCTCTCTGTGAGAATG
AAATTACGTATCGCATATCGTTTCTTCAAAAAATCTGCAACCAACCGACC
GCTCTCGAAATTCGACTCAATCAAATTACTTACTGACGGGGAATTACGTG
GAAGGTTCAATAATACCCTTTCGTCAAAAATCGAAACTCTAGATCGTATA
GAGTATGAATCGCTCGAAAAATCAATTCAAGATGCTGCATCGTCATGTTT
ACCTAAAATTACACGCTCTCCCCCAGACTGGTTTGTTGCAAACGAAGCTG
AACTTATGAGCTTGATCGAAAAGAGAAATATTGCTGtttacaacaaaaca
aaacgcaTCACACGTCATACAATTTCTGCTGCTATTCGAGCACGTAAAGA
ACTAAAGCAAGCTATAAATACTGCAAAGAGTAAATGGATTAAAAATGCAT
GTAATCGCTTGAATGAAGGTCCCA Run BLAST on NCBI protein sequence of TCONS_00071555-protein >TCONS_00071555-protein ID=TCONS_00071555-protein|Name=TCONS_00071555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MNSLVACSTYFRKKNYATWRHPRSKLPHQIDHILTLKTDFCRIIDVFVSK
PLLDSDHLSVRMKLRIAYRFFKKSATNRPLSKFDSIKLLTDGELRGRFNN
TLSSKIETLDRIEYESLEKSIQDAASSCLPKITRSPPDWFVANEAELMSL
IEKRNIAVYNKTKRITRHTISAAIRARKELKQAINTAKSKWIKNACNRLN
EGP Run BLAST on NCBI transcript from alignment at scaffold_60:1739020..1740193 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071555 ID=TCONS_00071555|Name=TCONS_00071555|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at scaffold_60:1739020..1740193 (Clytia hemisphaerica)
TGGGACCTTCATTCAAGCGATTACATGCATTTTTAATCCATTTACTCTTT
GCAGTATTTATAGCTTGCTTTAGTTCTTTACGTGCTCGAATAGCAGCAGA
AATTGTATGACGTGTGAtgcgttttgttttgttgtaaaCAGCAATATTTC
TCTTTTCGATCAAGCTCATAAGTTCAGCTTCGTTTGCAACAAACCAGTCT
GGGGGAGAGCGTGTAATTTTAGGTAAACATGACGATGCAGCATCTTGAAT
TGATTTTTCGAGCGATTCATACTCTATACGATCTAGAGTTTCGATTTTTG
ACGAAAGGGTATTATTGAACCTTCCACGTAATTCCCCGTCAGTAAGTAAT
TTGATTGAGTCGAATTTCGAGAGCGGTCGGTTGGTTGCAGATTTTTTGAA
GAAACGATATGCGATACGTAATTTCATTCTCACAGAGAGATGGTCTGAAT
CTAGCAGTggttttgaaacaaaaacatcaataattcgacaaaaatcagtt
ttcagTGTTAAAATGTGATCGATCTGGTGTGGAAGCTTCGAACGAGGGTG
TCTCCATGTGGCATAgttcttttttcgaaaataggTACTACATGCAACAA
GACTGTTCATTTCTAAAAATGCTGTAAATCTCAAACCAGCATGGTTGCTG
TGTGGTAGGCCAAATTTGCCCACTGAAGGTATTTCGATACCGGTTCTCTC
ATAAGTAATTCCGAGGGATGAATTGGTATCACAACCAACAATTAAGATAT
CTTTGGGACGTTTAGCGTTTATACAGCTATGAAGATTCTGAAGAAAAGAA
TCCCAGATAGCGACATCTGCAACTCCAACAGGGGCGTATGCTGAGAcgag
aaaaatatcaatatttttgtttcgattGTCTTTCAATGAGAGCCTAGTTG
CAAATAATGTTCAAATGTTTGAATTTCTTCGCTTTTGGCATGACAAACTG
GAGCTCGCGACACCACCAGTGTTGGTACTTAGATGATCAACTCCGGAATC
TGTGGCAGAAGAGTTCCTCTGGCTAACAGCAACCGTTGTAGTGAGATGAC
CATCATATCAGCACAGCCAAGTACATCTACATGAACATCGTTATTGTTGG
TTGTCGATGTTTAGGTGTGGTGGATCACCCCACTTTAATGTGGCGGATTT
TCTTTCACCACCAcaccctttttt Coding sequence (CDS) from alignment at scaffold_60:1739020..1740193 >TCONS_00071555 ID=TCONS_00071555|Name=TCONS_00071555|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_60:1739020..1740193 (Clytia hemisphaerica)
GGGACCTTCATTCAAGCGATTACATGCATTTTTAATCCATTTACTCTTTG
CAGTATTTATAGCTTGCTTTAGTTCTTTACGTGCTCGAATAGCAGCAGAA
ATTGTATGACGTGTGAtgcgttttgttttgttgtaaaCAGCAATATTTCT
CTTTTCGATCAAGCTCATAAGTTCAGCTTCGTTTGCAACAAACCAGTCTG
GGGGAGAGCGTGTAATTTTAGGTAAACATGACGATGCAGCATCTTGAATT
GATTTTTCGAGCGATTCATACTCTATACGATCTAGAGTTTCGATTTTTGA
CGAAAGGGTATTATTGAACCTTCCACGTAATTCCCCGTCAGTAAGTAATT
TGATTGAGTCGAATTTCGAGAGCGGTCGGTTGGTTGCAGATTTTTTGAAG
AAACGATATGCGATACGTAATTTCATTCTCACAGAGAGATGGTCTGAATC
TAGCAGTggttttgaaacaaaaacatcaataattcgacaaaaatcagttt
tcagTGTTAAAATGTGATCGATCTGGTGTGGAAGCTTCGAACGAGGGTGT
CTCCATGTGGCATAgttcttttttcgaaaataggTACTACATGCAACAAG
ACTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071555-exon-scaffold_60-1491911889:1739020..1740193 | TCONS_00071555-exon-scaffold_60-1491911889:1739020..1740193 | Clytia hemisphaerica | exon |
| TCONS_00071555-exon-scaffold_60-1510915933:1739020..1740193 | TCONS_00071555-exon-scaffold_60-1510915933:1739020..1740193 | Clytia hemisphaerica | exon |
| TCONS_00071555-exon-scaffold_60-1575043694:1739020..1740193 | TCONS_00071555-exon-scaffold_60-1575043694:1739020..1740193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1739020..1740193 . |
Blast
The following BLAST results are available for this feature:
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