TCONS_00071551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071551
Unique NameTCONS_00071551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071551 ID=TCONS_00071551|Name=TCONS_00071551|organism=Clytia hemisphaerica|type=transcript|length=273bp
ACATCGGTTGAAAACTGTAACTTTCGTACGTGTTGTCAAATCATGGTTGT
TGAAGACTCTGTCTTTTAGTCTGCCGAATGCACAAGATGTGGCTTGGATA
CGTGTGATCAATTCATCTTTGAGATTCGATTCTTTTGACAATATACTTCC
GAGATATTTGAAACGGTTCGTACATTTAAGTTTCGTTTCGTCAATAAAGA
AGTCACACTCAGGACCTAGGCACATAACCTCAGTCTTTTTGGCGTTTATT
TGCAGACCGAATCTCTTGGCANN
Run BLAST on NCBI

transcript from alignment at scaffold_60:1616454..1616726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071551 ID=TCONS_00071551|Name=TCONS_00071551|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at scaffold_60:1616454..1616726 (Clytia hemisphaerica)
NNTGCCAAGAGATTCGGTCTGCAAATAAACGCCAAAAAGACTGAGGTTAT
GTGCCTAGGTCCTGAGTGTGACTTCTTTATTGACGAAACGAAACTTAAAT
GTACGAACCGTTTCAAATATCTCGGAAGTATATTGTCAAAAGAATCGAAT
CTCAAAGATGAATTGATCACACGTATCCAAGCCACATCTTGTGCATTCGG
CAGACTAAAAGACAGAGTCTTCAACAACCATGATTTGACAACACGTACGA
AAGTTACAGTTTTCAACCGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044452XLOC_044452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071551-exon-scaffold_60-1491911889:1616454..1616726TCONS_00071551-exon-scaffold_60-1491911889:1616454..1616726Clytia hemisphaericaexon
TCONS_00071551-exon-scaffold_60-1510915933:1616454..1616726TCONS_00071551-exon-scaffold_60-1510915933:1616454..1616726Clytia hemisphaericaexon
TCONS_00071551-exon-scaffold_60-1575043694:1616454..1616726TCONS_00071551-exon-scaffold_60-1575043694:1616454..1616726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1616454..1616726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56429	6.13215	0.338692	4.17517	0.052387	0.858985	1.85699	0.87818	2.50008	1.85059	4.78353	3.40916	0	7.74959	4.56908	4.18363	4.3808	3.61351	9.74199	23.4293	13.6071	6.54956	16.8375	18.5662	7.83682	12.9027	30.5916	31.0424	13.5322	11.1065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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