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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=transcript|length=1055bp
TTGGTAGAATGCTTTCCTAAATGGAAACATGGTACAATTATTATAGGAGA
CGTCAACTAAACAAAAAAGTTCACATTCTCTTTTTTTcattatacaaaaa
aataaatcagcaaaaactaaaaaacactacaaagtttctaaattaTATTC
ACGAACGTATTTCAAAATTTGGTCTGCTTCTTTAAGTTCAACATGTAAAA
AATATCTATTCCCTTTAGCTTCAAAAGTGGAAAAAGCATGCTCAATCTCT
GGTATAGTAATATCTTCAACAGAAAACCTATGACGTTTGGTGGTTCCAAA
AATGGTGGAAGTTTCAGCGGCAAAGGTTCTTGTTTCTGGGTGGAAAAACA
TACGATAAACATATACTCTGGTCAACCAATGTAACAGACTGGTTGTTGTT
ACTCCCATAACAACCACGGTTGATGCTAGAATCGCTTTCGCAATAGTTGC
CAAGGTAGAAGCACTCATGAAAATAACAGCTGGTGCTGAAAGAGATACTG
TTGCAGTTgtaaatgaaaataactttagAAATTTAATTCTCTTGGATAAT
GGTCCTTCATATATAAGTCTGAAATCTTCATCTTTGACAGGTAGTGTACC
TGAAGAGCAATGTTTAGAACAACTTGTACTAAACAATATTTTTGAGACAT
TCCTTTGAGATATCTGTGGTAATCTACTATGCAGTAATGGCGTCTGTGTA
TTTGTTGAAATTCTGCAGAGATGTGTAAGTTGTGTACACGATGCTTTGGA
GACAAGTCTTTGTAATaaagacattttttattttatggaTCTAAAATATT
AGTAAACAGATGAAGAAAACTGGTGTTCAAcgaactttaaaacaaaattc
cCAAAAAGGCTTTCGAAAAAGGAAAACACTGTATAACTTAAGGCATGCAC
TCTTAGATTCCAAATAAATGGGCtccctgcttgttaatttttcgaaaatt
ttccaccccccAGACCTTAGTAtgaccccccggaccttattaggacccca
ggaccttattaggacccccgtttattaatttttaagaatattttcagttg
tcaaA Run BLAST on NCBI protein sequence of TCONS_00071544-protein >TCONS_00071544-protein ID=TCONS_00071544-protein|Name=TCONS_00071544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MSLLQRLVSKASCTQLTHLCRISTNTQTPLLHSRLPQISQRNVSKILFST
SCSKHCSSGTLPVKDEDFRLIYEGPLSKRIKFLKLFSFTTATVSLSAPAV
IFMSASTLATIAKAILASTVVVMGVTTTSLLHWLTRVYVYRMFFHPETRT
FAAETSTIFGTTKRHRFSVEDITIPEIEHAFSTFEAKGNRYFLHVELKEA
DQILKYVREYNLETL Run BLAST on NCBI transcript from alignment at scaffold_60:1163984..1165038 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at scaffold_60:1163984..1165038 (Clytia hemisphaerica)
Tttgacaactgaaaatattcttaaaaattaataaacgggggtcctaataa
ggtcctggggtcctaataaggtccggggggtcaTACTAAGGTCTgggggg
tggaaaattttcgaaaaattaacaagcagggaGCCCATTTATTTGGAATC
TAAGAGTGCATGCCTTAAGTTATACAGTGTTTTCCTTTTTCGAAAGCCTT
TTTGggaattttgttttaaagttcgTTGAACACCAGTTTTCTTCATCTGT
TTACTAATATTTTAGAtccataaaataaaaaatgtctttATTACAAAGAC
TTGTCTCCAAAGCATCGTGTACACAACTTACACATCTCTGCAGAATTTCA
ACAAATACACAGACGCCATTACTGCATAGTAGATTACCACAGATATCTCA
AAGGAATGTCTCAAAAATATTGTTTAGTACAAGTTGTTCTAAACATTGCT
CTTCAGGTACACTACCTGTCAAAGATGAAGATTTCAGACTTATATATGAA
GGACCATTATCCAAGAGAATTAAATTTctaaagttattttcatttacAAC
TGCAACAGTATCTCTTTCAGCACCAGCTGTTATTTTCATGAGTGCTTCTA
CCTTGGCAACTATTGCGAAAGCGATTCTAGCATCAACCGTGGTTGTTATG
GGAGTAACAACAACCAGTCTGTTACATTGGTTGACCAGAGTATATGTTTA
TCGTATGTTTTTCCACCCAGAAACAAGAACCTTTGCCGCTGAAACTTCCA
CCATTTTTGGAACCACCAAACGTCATAGGTTTTCTGTTGAAGATATTACT
ATACCAGAGATTGAGCATGCTTTTTCCACTTTTGAAGCTAAAGGGAATAG
ATATTTTTTACATGTTGAACTTAAAGAAGCAGACCAAATTTTGAAATACG
TTCGTGAATAtaatttagaaactttgtagtgttttttagtttttgctgat
ttatttttttgtataatgAAAAAAAGAGAATGTGAACTTTTTTGTTTAGT
TGACGTCTCCTATAATAATTGTACCATGTTTCCATTTAGGAAAGCATTCT
ACCAA Coding sequence (CDS) from alignment at scaffold_60:1163984..1165038 >TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_60:1163984..1165038 (Clytia hemisphaerica)
atgtctttATTACAAAGACTTGTCTCCAAAGCATCGTGTACACAACTTAC
ACATCTCTGCAGAATTTCAACAAATACACAGACGCCATTACTGCATAGTA
GATTACCACAGATATCTCAAAGGAATGTCTCAAAAATATTGTTTAGTACA
AGTTGTTCTAAACATTGCTCTTCAGGTACACTACCTGTCAAAGATGAAGA
TTTCAGACTTATATATGAAGGACCATTATCCAAGAGAATTAAATTTctaa
agttattttcatttacAACTGCAACAGTATCTCTTTCAGCACCAGCTGTT
ATTTTCATGAGTGCTTCTACCTTGGCAACTATTGCGAAAGCGATTCTAGC
ATCAACCGTGGTTGTTATGGGAGTAACAACAACCAGTCTGTTACATTGGT
TGACCAGAGTATATGTTTATCGTATGTTTTTCCACCCAGAAACAAGAACC
TTTGCCGCTGAAACTTCCACCATTTTTGGAACCACCAAACGTCATAGGTT
TTCTGTTGAAGATATTACTATACCAGAGATTGAGCATGCTTTTTCCACTT
TTGAAGCTAAAGGGAATAGATATTTTTTACATGTTGAACTTAAAGAAGCA
GACCAAATTTTGAAATACGTTCGTGAATAtaatttagaaactttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071544-exon-scaffold_60-1491911889:1163984..1165038 | TCONS_00071544-exon-scaffold_60-1491911889:1163984..1165038 | Clytia hemisphaerica | exon |
| TCONS_00071544-exon-scaffold_60-1510915933:1163984..1165038 | TCONS_00071544-exon-scaffold_60-1510915933:1163984..1165038 | Clytia hemisphaerica | exon |
| TCONS_00071544-exon-scaffold_60-1575043694:1163984..1165038 | TCONS_00071544-exon-scaffold_60-1575043694:1163984..1165038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1163984..1165038 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009724 | TMEM70 |
Blast
The following BLAST results are available for this feature:
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