TCONS_00071535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071535
Unique NameTCONS_00071535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071535 ID=TCONS_00071535|Name=TCONS_00071535|organism=Clytia hemisphaerica|type=transcript|length=513bp
TCAGCTTGATACATGTTCTTCTTTCCACCAGCGATGCGAGCAAGTTCTGT
ACTGTTGACTCCAGGACCAATTCCCACAGTCATCATATTGATTCCTTGTT
TTCGGATTTCACCAGCAATGACTGCTGGATCTTCAGCTCCTACATCTTGT
GTTTGTGAACCGTCTGTCAGGAGGATAAGAACTTTGTTTACACCAAAGCG
ACCGCCGTTTTTAATGGCAAACATATCACTTTGTGCTTGTCTTAAAGCTT
TGTCAATTCTTGTGGTTGATCCCATTAGAGGGATGTCATCTACAGCTTTA
CTTAAATCATTGATATCATTATATTGATTCATTTTGATGCTCAATTCTGT
GTAGTAACTAAATGTAATGACACCAACTTGAGCTGATTTTCCAATATCAA
ACTGAGCAGCCATGGCTTTGAGGAAATCCTTTTCTTTCGTGTACTCATTT
CGTAAGCTGCCAGATGAATCCAGAATGAAACCAACGTCGACTTCTTGTTG
GCAAAGTGCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00071535-protein

>TCONS_00071535-protein ID=TCONS_00071535-protein|Name=TCONS_00071535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
EALCQQEVDVGFILDSSGSLRNEYTKEKDFLKAMAAQFDIGKSAQVGVIT
FSYYTELSIKMNQYNDINDLSKAVDDIPLMGSTTRIDKALRQAQSDMFAI
KNGGRFGVNKVLILLTDGSQTQDVGAEDPAVIAGEIRKQGINMMTVGIGP
GVNSTELARIAGGKKNMYQA
Run BLAST on NCBI

transcript from alignment at scaffold_60:918734..919246

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071535 ID=TCONS_00071535|Name=TCONS_00071535|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at scaffold_60:918734..919246 (Clytia hemisphaerica)
CGAAGCACTTTGCCAACAAGAAGTCGACGTTGGTTTCATTCTGGATTCAT
CTGGCAGCTTACGAAATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCC
ATGGCTGCTCAGTTTGATATTGGAAAATCAGCTCAAGTTGGTGTCATTAC
ATTTAGTTACTACACAGAATTGAGCATCAAAATGAATCAATATAATGATA
TCAATGATTTAAGTAAAGCTGTAGATGACATCCCTCTAATGGGATCAACC
ACAAGAATTGACAAAGCTTTAAGACAAGCACAAAGTGATATGTTTGCCAT
TAAAAACGGCGGTCGCTTTGGTGTAAACAAAGTTCTTATCCTCCTGACAG
ACGGTTCACAAACACAAGATGTAGGAGCTGAAGATCCAGCAGTCATTGCT
GGTGAAATCCGAAAACAAGGAATCAATATGATGACTGTGGGAATTGGTCC
TGGAGTCAACAGTACAGAACTTGCTCGCATCGCTGGTGGAAAGAAGAACA
TGTATCAAGCTGA

Coding sequence (CDS) from alignment at scaffold_60:918734..919246

>TCONS_00071535 ID=TCONS_00071535|Name=TCONS_00071535|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_60:918734..919246 (Clytia hemisphaerica)
GAAGCACTTTGCCAACAAGAAGTCGACGTTGGTTTCATTCTGGATTCATC
TGGCAGCTTACGAAATGAGTACACGAAAGAAAAGGATTTCCTCAAAGCCA
TGGCTGCTCAGTTTGATATTGGAAAATCAGCTCAAGTTGGTGTCATTACA
TTTAGTTACTACACAGAATTGAGCATCAAAATGAATCAATATAATGATAT
CAATGATTTAAGTAAAGCTGTAGATGACATCCCTCTAATGGGATCAACCA
CAAGAATTGACAAAGCTTTAAGACAAGCACAAAGTGATATGTTTGCCATT
AAAAACGGCGGTCGCTTTGGTGTAAACAAAGTTCTTATCCTCCTGACAGA
CGGTTCACAAACACAAGATGTAGGAGCTGAAGATCCAGCAGTCATTGCTG
GTGAAATCCGAAAACAAGGAATCAATATGATGACTGTGGGAATTGGTCCT
GGAGTCAACAGTACAGAACTTGCTCGCATCGCTGGTGGAAAGAAGAACAT
GTATCAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044436XLOC_044436Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071535-proteinTCONS_00071535-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071535-exon-scaffold_60-1491911889:918734..919246TCONS_00071535-exon-scaffold_60-1491911889:918734..919246Clytia hemisphaericaexon
TCONS_00071535-exon-scaffold_60-1510915933:918734..919246TCONS_00071535-exon-scaffold_60-1510915933:918734..919246Clytia hemisphaericaexon
TCONS_00071535-exon-scaffold_60-1575043694:918734..919246TCONS_00071535-exon-scaffold_60-1575043694:918734..919246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:918734..919246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.314761	0	0	0	0.0983435	0	0	0	0	0.241814	0	0	0.438043	0.089796	0	0	3.04655	0.165111	0	0	1.75419	2.68383	0	0	0.388594	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
[Close]
BLAST of TCONS_00071535 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.048e-18
Identity = 57/164 (34.76%), Postives = 98/164 (59.76%), Query Frame = -2 
Query:   27 EALCQQEVDVGFILDSSGSLRNE-YTKEKDFLKAMAAQFDIGK-SAQVGVITFSYYTELSIKMNQYNDINDLSKAVDDIPLMGSTTRIDKALRQAQSDMFAIKNGGRFGVNKVLILLTDGSQTQDVGAEDPAVIAGEIRKQGINMMTVGIGPGVNSTELARIAG 512
            EA  + + D+ F++DSSGS+  E ++K K F+K + ++  IG    Q+GV+ FS   +   ++N++   +D+S A+D +  +G TT    AL    S  F+   G R  + K LIL+TDG + QD+  ++PAV+   +R++G+ + +VG+  G N T+L  I+G
Sbjct:  614 EACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFV-SQYFSPTKGARPNIRKFLILITDG-EAQDI-VKEPAVV---LRQEGVIIYSVGVF-GSNVTQLEEISG 770
The following BLAST results are available for this feature:
BLAST of TCONS_00071535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO6A61.048e-1834.76Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6... [more]
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