TCONS_00071523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071523
Unique NameTCONS_00071523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071523 ID=TCONS_00071523|Name=TCONS_00071523|organism=Clytia hemisphaerica|type=transcript|length=767bp
TCGGGCTCTTTTGGTCTATTAGATACGAATCGTTTAATTATCAAATATCC
ACAAACACACACAATAATTAGTAAGGATAACATTCCAAGTACTGTTAAAA
CgcaaaagaaatgaaatacaAAATACTCACTAAAATTGAAGGTCTATAAA
TCGAAACTTTATCTCGGACTTGAACCTTCATGGAACACGTAGTTCTATGG
TGCTCTTTGAAAATGTGTTCGAAATATGCAATGATAAGAAAACTAGAAAA
TAGATCAGTTcataaagtttgacttataTAGCTTTCCTTCTTAGAGATTA
AGCTTACCTTaaacaaagaaagaagaaatcttTTCCTCCCAATTTAATAT
CTTCTTAAAATTATTCCTTAATCTACATCCATTGCCATAATTAGAAATTG
ACTGGTTCAATCGTGATTGCCCCGGGTGCTATATTTTCGTAACCTGCATA
GATCGATCGATCGATGAATTAATTTATTACATTCCGGAAAATCTCAGACG
GGAAGCCTAATTTGTTTGAATCACAGAAGGatttataaagtatattttaC
GAGGGCTTTTCCTTGCCTGGAACTCTTTATATTCTTatatctttctctaa
tttgcaGCTCTATGTCCATCCTAAGATTATAAAGCTACAATACTCTGTTA
CAATTCCAAAAACCTCAATTTAAATACATTTTAGCTTGTTTATAAGTTCT
GCTAATTGATATTACAATAAGTGCAGATAATAGTTATTGTTTGTGCTAGG
TGTGTGTTTGGATCGGA
Run BLAST on NCBI

transcript from alignment at scaffold_60:725204..725970

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071523 ID=TCONS_00071523|Name=TCONS_00071523|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_60:725204..725970 (Clytia hemisphaerica)
TCCGATCCAAACACACACCTAGCACAAACAATAACTATTATCTGCACTTA
TTGTAATATCAATTAGCAGAACTTATAAACAAGCTAAAATGTATTTAAAT
TGAGGTTTTTGGAATTGTAACAGAGTATTGTAGCTTTATAATCTTAGGAT
GGACATAGAGCtgcaaattagagaaagatatAAGAATATAAAGAGTTCCA
GGCAAGGAAAAGCCCTCGtaaaatatactttataaatCCTTCTGTGATTC
AAACAAATTAGGCTTCCCGTCTGAGATTTTCCGGAATGTAATAAATTAAT
TCATCGATCGATCGATCTATGCAGGTTACGAAAATATAGCACCCGGGGCA
ATCACGATTGAACCAGTCAATTTCTAATTATGGCAATGGATGTAGATTAA
GGAATAATTTTAAGAAGATATTAAATTGGGAGGAAaagatttcttctttc
tttgtttAAGGTAAGCTTAATCTCTAAGAAGGAAAGCTAtataagtcaaa
ctttatgAACTGATCTATTTTCTAGTTTTCTTATCATTGCATATTTCGAA
CACATTTTCAAAGAGCACCATAGAACTACGTGTTCCATGAAGGTTCAAGT
CCGAGATAAAGTTTCGATTTATAGACCTTCAATTTTAGTGAGTATTTtgt
atttcatttcttttgcGTTTTAACAGTACTTGGAATGTTATCCTTACTAA
TTATTGTGTGTGTTTGTGGATATTTGATAATTAAACGATTCGTATCTAAT
AGACCAAAAGAGCCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044424XLOC_044424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071523-exon-scaffold_60-1491911889:725204..725970TCONS_00071523-exon-scaffold_60-1491911889:725204..725970Clytia hemisphaericaexon
TCONS_00071523-exon-scaffold_60-1510915933:725204..725970TCONS_00071523-exon-scaffold_60-1510915933:725204..725970Clytia hemisphaericaexon
TCONS_00071523-exon-scaffold_60-1575043694:725204..725970TCONS_00071523-exon-scaffold_60-1575043694:725204..725970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:725204..725970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.124001	0	0	0.0857414	0	0.0817424	0	0	0	0	0	0.0845704	0	0	0.116232	0.286376	0.244606	0.270349	0.2829	0.860621	0.989483	0.218699	0.198829	0	0.0609233	1.04617	1.27477	0.476051	0.359493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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