TCONS_00071520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071520
Unique NameTCONS_00071520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071520 ID=TCONS_00071520|Name=TCONS_00071520|organism=Clytia hemisphaerica|type=transcript|length=524bp
GGGTGATATATCCTATTTTGTATTGACTCATGTTGTctctaaagaaataa
aaacgtTATCCCAACACTATGCAATACATCAAAGTTcagtttctttttca
agttttgatgCTACTTCTTCAAGCAGTTTTGTATCATGAATAAGCTCATA
AATCATGTGGGAATTCATTGGGGATTTAGGGCTGTCTGGGTTGAGTGGAG
CTGTATGGCTGCATTCATTTATTGGGCAGGTGATTATCTCGGGCTCTTTT
GGTCTATTAGATACGAATCGTTTAATTATCAAATATCCACAAACACACAC
AATAATTAGTAAGGATAACATTCCAAGTACTGTTAAAACgcaaaagaaat
gaaatacaAAATACTCACTAAAATTGAAGGTCTATAAATCGAAACTTTAT
CTCGGACTTGAACCTCCATGGATACACGTAGTTCTATGGTGCTCTTTGAA
AATGTGTTCGAAATATGCAATGATAAGAAAACTAGAAAATAGATCAGTTC
ATAAATTTTGACTTATATAGCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_60:716828..717351

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071520 ID=TCONS_00071520|Name=TCONS_00071520|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at scaffold_60:716828..717351 (Clytia hemisphaerica)
AAAGCTATATAAGTCAAAATTTATGAACTGATCTATTTTCTAGTTTTCTT
ATCATTGCATATTTCGAACACATTTTCAAAGAGCACCATAGAACTACGTG
TATCCATGGAGGTTCAAGTCCGAGATAAAGTTTCGATTTATAGACCTTCA
ATTTTAGTGAGTATTTtgtatttcatttcttttgcGTTTTAACAGTACTT
GGAATGTTATCCTTACTAATTATTGTGTGTGTTTGTGGATATTTGATAAT
TAAACGATTCGTATCTAATAGACCAAAAGAGCCCGAGATAATCACCTGCC
CAATAAATGAATGCAGCCATACAGCTCCACTCAACCCAGACAGCCCTAAA
TCCCCAATGAATTCCCACATGATTTATGAGCTTATTCATGATACAAAACT
GCTTGAAGAAGTAGcatcaaaacttgaaaaagaaactgAACTTTGATGTA
TTGCATAGTGTTGGGATAacgtttttatttctttagagACAACATGAGTC
AATACAAAATAGGATATATCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044421XLOC_044421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071520-exon-scaffold_60-1491911889:716828..717351TCONS_00071520-exon-scaffold_60-1491911889:716828..717351Clytia hemisphaericaexon
TCONS_00071520-exon-scaffold_60-1510915933:716828..717351TCONS_00071520-exon-scaffold_60-1510915933:716828..717351Clytia hemisphaericaexon
TCONS_00071520-exon-scaffold_60-1575043694:716828..717351TCONS_00071520-exon-scaffold_60-1575043694:716828..717351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:716828..717351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.10983	0	0	0.151885	0.120021	0.160484	0.135561	0	0	0	0	0	0	0	0	0	0	0	0.125284	0.997309	0.647053	0.38741	0.352212	0.120923	0.107921	2.16209	0.543732	0.162177	0.254727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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