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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071518 ID=TCONS_00071518|Name=TCONS_00071518|organism=Clytia hemisphaerica|type=transcript|length=2032bp
attggttgtaaaATTGGAGATAATAGAAAGCAGTAcgcaaaataataata
aaaaaataattcatttaaataatttcatttcaaacaaAACTTGCTTATCA
ATACTTCAAATGTAACGCAGTCGTGATTGTCCGATAATTATTGTTCGTTT
GGTTGATTCTCGTTCAGCAAATCCCCAGAGCTCACGATATACAGTATAGA
CACATAATATAGCAGTTTTAAACAATTTAAGATCACAAAAATATTTGACC
TGCAACATCATAAAACAATAGATCAACTTAGAAAGCTAAGAAATGCGTTA
TAAAACGGACTCTTTTTAGTCCTTCATCATGGGCTTTCCTTTTAGCCACT
CGACAACATAGGCCTTTCTTTTGGCCAACGCCCTTTCTTAACGAACTCCA
CGGCACTTTCTTTACCGGTACTCTTTCTCGCACTTCGTCCTACTTTCTTT
CTCGATCGTTACGCCCCCTCGCAGGAATTTTCAATTGTCCGGTTCATATA
TAGAAGTGTTTCTCTTTGTAGCAGTATTATTGTATCATTTGTATCGTGCT
AATATTGTCTTTATTAAGTTGGTATAATGTAGCTCATTTTCTTCAGTCGT
GACCCTGACGTGGGAAGCTTTCGGGTACTGATCCTTGCTCAAGGGAGCCC
GAGGGTGTTTTAAATCGTCCCATGACTTTTGTTATTTGTAATTACCATCA
AGTCATAAATAAGACTCAATTCAACAAGCTATGCAACAAATAAACGAATC
CATATTATTTCGATCGTGTCAATGTGCCTCAGACTCAGTAACTCCTGTTC
AATTAAAGCATAATCAACTTTTAATAACCATCGATGACACGCATATCATC
CGAACGACGTCAAAAAAAGACACGAAAGATAGAACTCATCAAAGACTATT
AGTGGTCAAAAGATTCTATAAGGATAATCTAGAAACACGAAATTTTACTC
GATAGAAAGCATGAAAGAGTGAATAAGATAAGAAGCAAACTCCTACAAAA
AATAACGTCAACTCTAATTTCAATGTGactcagttacatcaaaatattAT
TCTGTTATGttctatattttctaaaatgttttcCCTGATTGAAAGGGGCA
TTCGATCTTCCTTGATTAAAGGGCTGATTTGGTCTACGTCTATTGTTGTT
ACCGTTGCCGCCGGTCCTTGAATTACTTGTTGTCCTATCCAACCTTTCTT
GCACCTCCTTCATCGATTGGATAGTTGCTAGCACATCTCGCATCATCATC
TCTGGCTCCGGTGGGCTGATGGATTCTTTCAGAAGTAAGTGATGTGTTGC
TTGTGCGTACGTTTTTGGCTGTGTCTCATCTGAACGAATGTGCGGTACGA
GTGATCCAGTCCATTCACCATGATGTCCAATTTTACTTGGTCCGAGATGG
CCAAGTTTTGTGCGAGTGTTTCAATCCTGGCGAAGTATTTAGACAGACTC
TCGCCCTGCTGTTTGATGTTGTGTAGTTCTTGTCTTTTTTTGTACTGTAG
TTGTGGAGAGTTGAATTAGATCCTCAGCGCGTTCGTCATTTTGGTATAGT
CATTCTTGACATTTTTAGTTGGGTGAGATAGAAGGTATATGCTCTCCCTT
TCAGCGTCATTGGAATAACGTTGGCTTTGGTTTCACCTTGGAGGTTGTAG
AAGTTAACTGCCAAGTCAAGCTTTTGTAAATAGTCCAAGATATCATCTTG
TTCCGTTTCTCCAAAGGTTGGCATCAATCGCATGTCCACGTTTCGGCTGA
GAATTGCGGATAACAATTCTGTCGGCATCCCCATATGAGTAGAATTTGAG
TTTGATTCGTTCTCTCACCCAAGGCAACACACAAGGACCTGGTACGAAag
aatctcggtagaacctccaTGTCGAGGATCTGGAGGGTGTTTTATGGGGA
ACTGGGGGAGTCCCTCGATCCTGAGTGGAACTATGGTGTAATGGGAATCT
GGGGGAAAAGACACTGGGGAAATAGGAAACACTAAGGAATTTGAGTTGTA
ATTGTTGTAGGAACGATTCTTTTTAAAGCACA Run BLAST on NCBI transcript from alignment at scaffold_60:712194..714225 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071518 ID=TCONS_00071518|Name=TCONS_00071518|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at scaffold_60:712194..714225 (Clytia hemisphaerica)
TGTGCTTTAAAAAGAATCGTTCCTACAACAATTACAACTCAAATTCCTTA
GTGTTTCCTATTTCCCCAGTGTCTTTTCCCCCAGATTCCCATTACACCAT
AGTTCCACTCAGGATCGAGGGACTCCCCCAGTTCCCCATAAAACACCCTC
CAGATCCTCGACAtggaggttctaccgagattctTTCGTACCAGGTCCTT
GTGTGTTGCCTTGGGTGAGAGAACGAATCAAACTCAAATTCTACTCATAT
GGGGATGCCGACAGAATTGTTATCCGCAATTCTCAGCCGAAACGTGGACA
TGCGATTGATGCCAACCTTTGGAGAAACGGAACAAGATGATATCTTGGAC
TATTTACAAAAGCTTGACTTGGCAGTTAACTTCTACAACCTCCAAGGTGA
AACCAAAGCCAACGTTATTCCAATGACGCTGAAAGGGAGAGCATATACCT
TCTATCTCACCCAACTAAAAATGTCAAGAATGACTATACCAAAATGACGA
ACGCGCTGAGGATCTAATTCAACTCTCCACAACTACAGTACAAAAAAAGA
CAAGAACTACACAACATCAAACAGCAGGGCGAGAGTCTGTCTAAATACTT
CGCCAGGATTGAAACACTCGCACAAAACTTGGCCATCTCGGACCAAGTAA
AATTGGACATCATGGTGAATGGACTGGATCACTCGTACCGCACATTCGTT
CAGATGAGACACAGCCAAAAACGTACGCACAAGCAACACATCACTTACTT
CTGAAAGAATCCATCAGCCCACCGGAGCCAGAGATGATGATGCGAGATGT
GCTAGCAACTATCCAATCGATGAAGGAGGTGCAAGAAAGGTTGGATAGGA
CAACAAGTAATTCAAGGACCGGCGGCAACGGTAACAACAATAGACGTAGA
CCAAATCAGCCCTTTAATCAAGGAAGATCGAATGCCCCTTTCAATCAGGg
aaaacattttagaaaatatagaaCATAACAGAATaatattttgatgtaac
tgagtCACATTGAAATTAGAGTTGACGTTATTTTTTGTAGGAGTTTGCTT
CTTATCTTATTCACTCTTTCATGCTTTCTATCGAGTAAAATTTCGTGTTT
CTAGATTATCCTTATAGAATCTTTTGACCACTAATAGTCTTTGATGAGTT
CTATCTTTCGTGTCTTTTTTTGACGTCGTTCGGATGATATGCGTGTCATC
GATGGTTATTAAAAGTTGATTATGCTTTAATTGAACAGGAGTTACTGAGT
CTGAGGCACATTGACACGATCGAAATAATATGGATTCGTTTATTTGTTGC
ATAGCTTGTTGAATTGAGTCTTATTTATGACTTGATGGTAATTACAAATA
ACAAAAGTCATGGGACGATTTAAAACACCCTCGGGCTCCCTTGAGCAAGG
ATCAGTACCCGAAAGCTTCCCACGTCAGGGTCACGACTGAAGAAAATGAG
CTACATTATACCAACTTAATAAAGACAATATTAGCACGATACAAATGATA
CAATAATACTGCTACAAAGAGAAACACTTCTATATATGAACCGGACAATT
GAAAATTCCTGCGAGGGGGCGTAACGATCGAGAAAGAAAGTAGGACGAAG
TGCGAGAAAGAGTACCGGTAAAGAAAGTGCCGTGGAGTTCGTTAAGAAAG
GGCGTTGGCCAAAAGAAAGGCCTATGTTGTCGAGTGGCTAAAAGGAAAGC
CCATGATGAAGGACTAAAAAGAGTCCGTTTTATAACGCATTTCTTAGCTT
TCTAAGTTGATCTATTGTTTTATGATGTTGCAGGTCAAATATTTTTGTGA
TCTTAAATTGTTTAAAACTGCTATATTATGTGTCTATACTGTATATCGTG
AGCTCTGGGGATTTGCTGAACGAGAATCAACCAAACGAACAATAATTATC
GGACAATCACGACTGCGTTACATTTGAAGTATTGATAAGCAAGTTttgtt
tgaaatgaaattatttaaatgaattatttttttattattattttgcgTAC
TGCTTTCTATTATCTCCAATtttacaaccaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071518-exon-scaffold_60-1491911889:712194..714225 | TCONS_00071518-exon-scaffold_60-1491911889:712194..714225 | Clytia hemisphaerica | exon |
| TCONS_00071518-exon-scaffold_60-1510915933:712194..714225 | TCONS_00071518-exon-scaffold_60-1510915933:712194..714225 | Clytia hemisphaerica | exon |
| TCONS_00071518-exon-scaffold_60-1575043694:712194..714225 | TCONS_00071518-exon-scaffold_60-1575043694:712194..714225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:712194..714225 . |
Blast
The following BLAST results are available for this feature:
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