TCONS_00071517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071517
Unique NameTCONS_00071517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071517 ID=TCONS_00071517|Name=TCONS_00071517|organism=Clytia hemisphaerica|type=transcript|length=436bp
TGTTGAATATGAACAGTACTAGCTAATAGCCAGGCCATGACATGATAACC
TTTATTAGATTTCCCAGAAACAAAACGGACCGCATTTGGAGTGAGGAGGG
AAAAATGAAGTAAAGCCGAATGATAGAAGGGAATCTCCTATGGATAGTTT
TCATTCAAATGTTATCACGTCCATCTTTACATAAGACACTTTCCTTAAAA
TAAATAGAAGGATTTCTTGATCAACCAGGATTTCCAAATAGAGTAACTAA
GGGACGTGGAAAAGGGAGATTCAATCGAACACTATGAATTGTACAAAACA
TGTCAGAAATAGGGGGATAGAAAAGGTGATGTCCCCACTAACAGCACAAG
AATTCtgtgaaaaatatgaaaaaaaatttaaatgaaatttagtTTAAGGG
TATTTGTAATGATGCAAGGTATGGAATTTAAATATA
Run BLAST on NCBI

transcript from alignment at scaffold_60:710461..710896

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071517 ID=TCONS_00071517|Name=TCONS_00071517|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_60:710461..710896 (Clytia hemisphaerica)
TATATTTAAATTCCATACCTTGCATCATTACAAATACCCTTAAactaaat
ttcatttaaattttttttcatatttttcacaGAATTCTTGTGCTGTTAGT
GGGGACATCACCTTTTCTATCCCCCTATTTCTGACATGTTTTGTACAATT
CATAGTGTTCGATTGAATCTCCCTTTTCCACGTCCCTTAGTTACTCTATT
TGGAAATCCTGGTTGATCAAGAAATCCTTCTATTTATTTTAAGGAAAGTG
TCTTATGTAAAGATGGACGTGATAACATTTGAATGAAAACTATCCATAGG
AGATTCCCTTCTATCATTCGGCTTTACTTCATTTTTCCCTCCTCACTCCA
AATGCGGTCCGTTTTGTTTCTGGGAAATCTAATAAAGGTTATCATGTCAT
GGCCTGGCTATTAGCTAGTACTGTTCATATTCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044418XLOC_044418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071517-exon-scaffold_60-1491911889:710461..710896TCONS_00071517-exon-scaffold_60-1491911889:710461..710896Clytia hemisphaericaexon
TCONS_00071517-exon-scaffold_60-1510915933:710461..710896TCONS_00071517-exon-scaffold_60-1510915933:710461..710896Clytia hemisphaericaexon
TCONS_00071517-exon-scaffold_60-1575043694:710461..710896TCONS_00071517-exon-scaffold_60-1575043694:710461..710896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:710461..710896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.204994	0	0.425676	0.173127	0.210765	0.499649	0	0	1.09653	0.489403	0.828386	0.936792	1.06937	0.895184	0.177493	0.190477	0	0.240511	0.166139	0.521558	0.15111	0.884472	0	0.162918	1.00681	1.94686	0.428608	1.14356	0	0.176738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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