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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071516 ID=TCONS_00071516|Name=TCONS_00071516|organism=Clytia hemisphaerica|type=transcript|length=2200bp
aaaagaaagaaaaaaaaactgacgGGAATTCAATGCAAATCACAATTTTT
GTACGAGATACTTCCGATATTCGTCCAGTGATCCAGTTACCCACATAGGC
GCAGGTTTACGTATTAGCTTGAAGAGTAGGGTTTGTAGTCGAACCGCCTC
TCTGCAGTCGCTCTCGATCCTACATTAATTGACATGGTGCAGCGTTAGGA
GAATGATTCTTCGTCGGATTGATTTTGTTGTTCGTCCTACTTTTTTCTTC
CTTCGTTTTATGTTTTTGATGATCTGTCGCAAGTCCACTTCTTCTTCCGA
TTCGGAAAGGGCAAATTGTTCGTTAGCGTCGAATTAAAAAAACTCTTCAA
CCTCAGCCATATTATAAAATAAATTCAGGAACACATTTATGAAAAGTATA
AAATCACGCATTTATAATAATACACACATACACAAAATTTCTATGATTCA
TGAAGCCAAGCTTTCACATCTCCACTTCCATTTTTAGTTTCTGGGCTAGG
GCCGCCAAGAACTCTGAGTTCTTGACAACACCCTTTACGCTGAACATCTT
GATCTTGTCCTCCGTGGGATCGGTCAGACTTTCCCGGCTTTGCATCTTTT
TCACCACAAGGTAGATTACCAGGGAGACTATTATCAATAAGGCCACCATA
CCAAGTATCGCGGAGATACCACCGAGAATGCCTTTGAATAGGTTCGTTCC
CCCTTCCGTGACATTTCTAATAGCTCTTCCACTCTCTTTAATCGTAGATG
CCAAGGCATCTCCTGAGCTAGAGATAACGTCTTTACTAAGGGAACCAACA
CCCTCGGCGGCCGATTTGGTGCTTATCCCCAGGCTGCTGATGACCTCACT
GGCACCCCCCCCCCACCTTTTCCAAAACGCTACCTAGACCGGCTGCCACA
GCTGTAAATACGTTTGTGGATGATCCCTTTCAATTTCGTACGCATTTACC
ATTTGTTGGTGTACGCCCGTCGGAATTTCAATATTTGTGTCCAGGACGGT
TGTACAGATATCTTTTTCCATCAGGCCACTTGGAAACAATCCACTGTCTA
TTGAGATATTCTATGCTGCTCCCTCGTTGTTACTTTCCTCGTTTCTTGCC
ATTTCTTTCGGGATGATTAAATTTGGATCTTCTGTCTTTCTGGACATCAG
GCTATTTATGCGTTTGGGCGGCTTTAGTGCAGCATCTATTGTACGTTCTA
TGGTCGTTCTGTCATAATTTTCTGTTGAATTCTGGACGGGAGTCATCATT
TCTGCTGGGTTTCAGCGTGAGAAGATTTTGCAATAAGAGATTAATGGAAG
TTTCTTGTTTCAGATACATTTTTTTCAAGCGCTCTAAATGATATATGATT
CAGATTACTCTGTGATAATGTGAAGTGTTATAGACAGGCTTATATCGTTT
ATGTGGTTTGTAAATTTGTCTTTTTGACATTTAGTTCAATTCGACGTATG
GGGCAACCagcttgcccccccccccattccAGGATTTTCAGTATACAATA
TGTATCCTACGGCTAGTATAATGAACAATATTACGACTGTTCTGACGATT
CCGGATATTTTTCCCATGGCACTTGCAAACCCATGACCCGCTCCTTCCAG
TGCTTGGCCAGCGGCTGGAAGAATAACTGCACTTGCATTTGCCAATGAAT
TTATCAGATCTTTGTCCACGTCGTTCACTCCTTATAGTGACTCTTGAAGG
GCAGAACCCAAGCTCTTTATGATCATACTTCCGCTATTTCCGATACTCAT
TAACGCGTGACCGAGAGCTTTACCGATACTttctattcttgatatgcgta
agtcatttttctagcggaaacaccctaaaaaagccgggatttaacctctc
tctgttactaaaaatagaaacacagaggtcaaaaaccggcttttttgggt
gcttccgttaaaaaatatgacgtcatcttgacttacgcatatcaagaata
aagTTTGACCCACGAAACGTTGCACTTTTCCGACAGTGAAGAATTTGTGA
CTTCAACACGTAAAAATTTGCTAAGGATTAAAAGATTATCTCTTTTTTCT
CACGGCTTGCTAAATTGTTCTTCGTACGTTTTTCAGAGGCTTTGGCGGCt
gtttctgattggttgatcgAAAATGATAGGAGCTTGTTTGAATGATTGGT
CAGAGATTAACTAttttctgattggttgtaaaATTGGAGATAATAGAAAG Run BLAST on NCBI transcript from alignment at scaffold_60:706468..708667 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071516 ID=TCONS_00071516|Name=TCONS_00071516|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at scaffold_60:706468..708667 (Clytia hemisphaerica)
CTTTCTATTATCTCCAATtttacaaccaatcagaaaaTAGTTAATCTCTG
ACCAATCATTCAAACAAGCTCCTATCATTTTcgatcaaccaatcagaaac
aGCCGCCAAAGCCTCTGAAAAACGTACGAAGAACAATTTAGCAAGCCGTG
AGAAAAAAGAGATAATCTTTTAATCCTTAGCAAATTTTTACGTGTTGAAG
TCACAAATTCTTCACTGTCGGAAAAGTGCAACGTTTCGTGGGTCAAActt
tattcttgatatgcgtaagtcaagatgacgtcatattttttaacggaagc
acccaaaaaagccggtttttgacctctgtgtttctatttttagtaacaga
gagaggttaaatcccggcttttttagggtgtttccgctagaaaaatgact
tacgcatatcaagaatagaaAGTATCGGTAAAGCTCTCGGTCACGCGTTA
ATGAGTATCGGAAATAGCGGAAGTATGATCATAAAGAGCTTGGGTTCTGC
CCTTCAAGAGTCACTATAAGGAGTGAACGACGTGGACAAAGATCTGATAA
ATTCATTGGCAAATGCAAGTGCAGTTATTCTTCCAGCCGCTGGCCAAGCA
CTGGAAGGAGCGGGTCATGGGTTTGCAAGTGCCATGGGAAAAATATCCGG
AATCGTCAGAACAGTCGTAATATTGTTCATTATACTAGCCGTAGGATACA
TATTGTATACTGAAAATCCTggaatgggggggggggcaagctGGTTGCCC
CATACGTCGAATTGAACTAAATGTCAAAAAGACAAATTTACAAACCACAT
AAACGATATAAGCCTGTCTATAACACTTCACATTATCACAGAGTAATCTG
AATCATATATCATTTAGAGCGCTTGAAAAAAATGTATCTGAAACAAGAAA
CTTCCATTAATCTCTTATTGCAAAATCTTCTCACGCTGAAACCCAGCAGA
AATGATGACTCCCGTCCAGAATTCAACAGAAAATTATGACAGAACGACCA
TAGAACGTACAATAGATGCTGCACTAAAGCCGCCCAAACGCATAAATAGC
CTGATGTCCAGAAAGACAGAAGATCCAAATTTAATCATCCCGAAAGAAAT
GGCAAGAAACGAGGAAAGTAACAACGAGGGAGCAGCATAGAATATCTCAA
TAGACAGTGGATTGTTTCCAAGTGGCCTGATGGAAAAAGATATCTGTACA
ACCGTCCTGGACACAAATATTGAAATTCCGACGGGCGTACACCAACAAAT
GGTAAATGCGTACGAAATTGAAAGGGATCATCCACAAACGTATTTACAGC
TGTGGCAGCCGGTCTAGGTAGCGTTTTGGAAAAGGTGGGGGGGGGGTGCC
AGTGAGGTCATCAGCAGCCTGGGGATAAGCACCAAATCGGCCGCCGAGGG
TGTTGGTTCCCTTAGTAAAGACGTTATCTCTAGCTCAGGAGATGCCTTGG
CATCTACGATTAAAGAGAGTGGAAGAGCTATTAGAAATGTCACGGAAGGG
GGAACGAACCTATTCAAAGGCATTCTCGGTGGTATCTCCGCGATACTTGG
TATGGTGGCCTTATTGATAATAGTCTCCCTGGTAATCTACCTTGTGGTGA
AAAAGATGCAAAGCCGGGAAAGTCTGACCGATCCCACGGAGGACAAGATC
AAGATGTTCAGCGTAAAGGGTGTTGTCAAGAACTCAGAGTTCTTGGCGGC
CCTAGCCCAGAAACTAAAAATGGAAGTGGAGATGTGAAAGCTTGGCTTCA
TGAATCATAGAAATTTTGTGTATGTGTGTATTATTATAAATGCGTGATTT
TATACTTTTCATAAATGTGTTCCTGAATTTATTTTATAATATGGCTGAGG
TTGAAGAGTTTTTTTAATTCGACGCTAACGAACAATTTGCCCTTTCCGAA
TCGGAAGAAGAAGTGGACTTGCGACAGATCATCAAAAACATAAAACGAAG
GAAGAAAAAAGTAGGACGAACAACAAAATCAATCCGACGAAGAATCATTC
TCCTAACGCTGCACCATGTCAATTAATGTAGGATCGAGAGCGACTGCAGA
GAGGCGGTTCGACTACAAACCCTACTCTTCAAGCTAATACGTAAACCTGC
GCCTATGTGGGTAACTGGATCACTGGACGAATATCGGAAGTATCTCGTAC
AAAAATTGTGATTTGCATTGAATTCCcgtcagtttttttttctttctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071516-exon-scaffold_60-1491911889:706468..708667 | TCONS_00071516-exon-scaffold_60-1491911889:706468..708667 | Clytia hemisphaerica | exon |
| TCONS_00071516-exon-scaffold_60-1510915933:706468..708667 | TCONS_00071516-exon-scaffold_60-1510915933:706468..708667 | Clytia hemisphaerica | exon |
| TCONS_00071516-exon-scaffold_60-1575043694:706468..708667 | TCONS_00071516-exon-scaffold_60-1575043694:706468..708667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:706468..708667 . |
Blast
The following BLAST results are available for this feature:
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