TCONS_00071509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071509
Unique NameTCONS_00071509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071509 ID=TCONS_00071509|Name=TCONS_00071509|organism=Clytia hemisphaerica|type=transcript|length=231bp
GCCTAGGCTAATTTCCGGGATAAGAATTTCTCTTCAGATGATTAAcagtc
gaaaaaaattggaacaaaaataaaaatcaaggtcttttagctttcttttt
tttctgtttctttttcttcagattCGTTTTTCACTTTTACAAAGCAGGGA
AGTTTCTTCAGCTTGCTTTCAGTTATATCAATGCCGataatctttttctt
cttttctaacTTCTCAAGCAAGACTTGAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_60:657615..657845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071509 ID=TCONS_00071509|Name=TCONS_00071509|organism=Clytia hemisphaerica|type=transcript|length=231bp|location=Sequence derived from alignment at scaffold_60:657615..657845 (Clytia hemisphaerica)
CGCTCAAGTCTTGCTTGAGAAgttagaaaagaagaaaaagattatCGGCA
TTGATATAACTGAAAGCAAGCTGAAGAAACTTCCCTGCTTTGTAAAAGTG
AAAAACGaatctgaagaaaaagaaacagaaaaaaaagaaagctaaaagac
cttgatttttatttttgttccaatttttttcgactgTTAATCATCTGAAG
AGAAATTCTTATCCCGGAAATTAGCCTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044410XLOC_044410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071509-exon-scaffold_60-1491911889:657615..657845TCONS_00071509-exon-scaffold_60-1491911889:657615..657845Clytia hemisphaericaexon
TCONS_00071509-exon-scaffold_60-1510915933:657615..657845TCONS_00071509-exon-scaffold_60-1510915933:657615..657845Clytia hemisphaericaexon
TCONS_00071509-exon-scaffold_60-1575043694:657615..657845TCONS_00071509-exon-scaffold_60-1575043694:657615..657845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:657615..657845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.02733	0	0	2.80361	1.10773	4.00928	3.75344	2.62787	2.17003	1.05314	0	2.07399	2.15386	0	1.26687	0	0.799823	0	0	1.00504	1.47066	2.38371	0	29.0173	43.8262	1.42534	0	3.46125	1.17549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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