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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071503 ID=TCONS_00071503|Name=TCONS_00071503|organism=Clytia hemisphaerica|type=transcript|length=1886bp
gacGAATCACAGCGCTGTATCTGCTCCaatattaataaaaaaatccattc
aaaacatgaaaaatatatcTAATTCTATTCAAATGAAAAATTCCTCTACA
TtagaaaattataatttttgtttgaacGAAAATAAAATACTTTGATACAT
TGTAATAATGTTGTATTcagcacaaaaaaaaatttatctttcattgaatt
tttttttttgatatattCTTTTCAATGTTCATGTTCATTAAAACCATatg
aaataaatcatttttaaataatttaattCTTGTCTCTATTTTTCTATATG
AACCCTTTTTCATGGGCACTGCTGTTTTGCTGTGTTCTATTTTGTTCAAT
TTACATTGTTCTATACTGAATATCCCCCCTCTCCACCGGACCAATAATTC
GCACAGCAGGAGTGTACAGTCTTCCCTAAATAGTAAAAATATTGCCGCTT
ATAAATTTAGTCAAACTTCAAGCCAAACTTACATACAATTTGTAAGCGTA
ATTGTCACTGAATTGACATACACAGGCTAGTAAAATTGACCATCAAACAC
ATCTATTATAACTTTTGAACACCATTTTTGACGCCGGTTTCAATCGAGTG
TGGTCTCTCGAAGGTTGAAGTTGTCATTAACAAGGAAACAAATGTCTTAG
AGAACTGTCACCTTAATTATTTTGCCCAAAACATGACCACGTTCAACAGA
AAGTTCAAGCTGTAAAAAGGCAAGATCTTTCCAAAGACCGTATTTAGTAC
TTACAACAAAAGCGAAAAAGACAAAGACCTTCTGCAGACACGCTACCCTA
CAAGCAATGTACTCATCGATGAGACTTCCACACCATGTCAACGCCATCTC
CTTAATCCATCACATTAACACCAAACAATATCATCGGAAATGAGTTACAA
ACTATATAACAGTCTGTTAATACTACACTTGCAGTGACGGAAGGAACACA
GACATTACAACCAGCTTAATATCTCATTCTAACTCATTTCCTTACAAATC
TTTGTTATAAATCTTCGGTTCAGTATTTTTCACGATTTAAAATCTCCCAA
AACTATGCTCACCTCAAAACATCTAACTATTATTGTAACCAAACATTGGA
GAATACAGTAGAGCCCTTTAACTCCAAACTCTTTTACTCGAATATCTCCT
TGACTCGGACAAgctttctcgtcccttcagctGACAATGACTTATAAACC
AATCTCaataaatcgaaatttccttaactggAACAAATTTGTGTGTTCCC
CGTACAGGTTCGAGTTATAGGGACTCCACTATATCAGGAAATAGCAGATT
GACCAATAGCAATAAAGCATCACACCTCAGAATGATAGGCTAACCAATGA
AAACGTTTACACAATTTCACGCGCCGTTCTTTTTGCAAAATACCGCAACT
TTAAACCATTGCGTCCGGTTTCAAGTGAAACAAATCCCCGTCTTTATTTT
CCCTTTCGCATTTATCTCTCTCTTTCTTCTCCTCTCCTCGCACTTATCTC
ACTCCAACACTCGGGCCCAATCCATCAAAACCAAAATGATATCTTTCTAT
ATATCTATCCatctttctcttttctcttgTCCGTTTTTTCTCTGTATTCT
ATGTGTGTAAAATTTTGTGAGCCTCACGACGGCAATGCTTGATAGAAAGA
GGTAACCGCAATACTAACTTTAATTTAATCAATGTATTGTTTTATATACG
ATTTTTTTTGTAACAAAAATATTGGAGAAACAGCCGTTGTTCTGTATGTC
TCTCTTTCTCCTGCCCAGGGTTACCTCAAAAGTTAATCCACAATCAACAT
AAGCCATATTGCATCTATCTTTCCGGACCTTAAATTACATTTGACCAATT
GAAACATATATCCTTTGTATCATGACCTGACAGTCA Run BLAST on NCBI transcript from alignment at scaffold_60:463116..465001 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071503 ID=TCONS_00071503|Name=TCONS_00071503|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at scaffold_60:463116..465001 (Clytia hemisphaerica)
TGACTGTCAGGTCATGATACAAAGGATATATGTTTCAATTGGTCAAATGT
AATTTAAGGTCCGGAAAGATAGATGCAATATGGCTTATGTTGATTGTGGA
TTAACTTTTGAGGTAACCCTGGGCAGGAGAAAGAGAGACATACAGAACAA
CGGCTGTTTCTCCAATATTTTTGTTACAAAAAAAATCGTATATAAAACAA
TACATTGATTAAATTAAAGTTAGTATTGCGGTTACCTCTTTCTATCAAGC
ATTGCCGTCGTGAGGCTCACAAAATTTTACACACATAGAATACAGAGAAA
AAACGGAcaagagaaaagagaaagatGGATAGATATATAGAAAGATATCA
TTTTGGTTTTGATGGATTGGGCCCGAGTGTTGGAGTGAGATAAGTGCGAG
GAGAGGAGAAGAAAGAGAGAGATAAATGCGAAAGGGAAAATAAAGACGGG
GATTTGTTTCACTTGAAACCGGACGCAATGGTTTAAAGTTGCGGTATTTT
GCAAAAAGAACGGCGCGTGAAATTGTGTAAACGTTTTCATTGGTTAGCCT
ATCATTCTGAGGTGTGATGCTTTATTGCTATTGGTCAATCTGCTATTTCC
TGATATAGTGGAGTCCCTATAACTCGAACCTGTACGGGGAACACACAAAT
TTGTTccagttaaggaaatttcgatttattGAGATTGGTTTATAAGTCAT
TGTCagctgaagggacgagaaagcTTGTCCGAGTCAAGGAGATATTCGAG
TAAAAGAGTTTGGAGTTAAAGGGCTCTACTGTATTCTCCAATGTTTGGTT
ACAATAATAGTTAGATGTTTTGAGGTGAGCATAGTTTTGGGAGATTTTAA
ATCGTGAAAAATACTGAACCGAAGATTTATAACAAAGATTTGTAAGGAAA
TGAGTTAGAATGAGATATTAAGCTGGTTGTAATGTCTGTGTTCCTTCCGT
CACTGCAAGTGTAGTATTAACAGACTGTTATATAGTTTGTAACTCATTTC
CGATGATATTGTTTGGTGTTAATGTGATGGATTAAGGAGATGGCGTTGAC
ATGGTGTGGAAGTCTCATCGATGAGTACATTGCTTGTAGGGTAGCGTGTC
TGCAGAAGGTCTTTGTCTTTTTCGCTTTTGTTGTAAGTACTAAATACGGT
CTTTGGAAAGATCTTGCCTTTTTACAGCTTGAACTTTCTGTTGAACGTGG
TCATGTTTTGGGCAAAATAATTAAGGTGACAGTTCTCTAAGACATTTGTT
TCCTTGTTAATGACAACTTCAACCTTCGAGAGACCACACTCGATTGAAAC
CGGCGTCAAAAATGGTGTTCAAAAGTTATAATAGATGTGTTTGATGGTCA
ATTTTACTAGCCTGTGTATGTCAATTCAGTGACAATTACGCTTACAAATT
GTATGTAAGTTTGGCTTGAAGTTTGACTAAATTTATAAGCGGCAATATTT
TTACTATTTAGGGAAGACTGTACACTCCTGCTGTGCGAATTATTGGTCCG
GTGGAGAGGGGGGATATTCAGTATAGAACAATGTAAATTGAACAAAATAG
AACACAGCAAAACAGCAGTGCCCATGAAAAAGGGTTCATATAGAAAAATA
GAGACAAGaattaaattatttaaaaatgatttatttcatATGGTTTTAAT
GAACATGAACATTGAAAAGaatatatcaaaaaaaaaaattcaatgaaaga
taaatttttttttgtgctgAATACAACATTATTACAATGTATCAAAGTAT
TTTATTTTCgttcaaacaaaaattataattttctaATGTAGAGGAATTTT
TCATTTGAATAGAATTAgatatatttttcatgttttgaatggattttttt
attaatattGGAGCAGATACAGCGCTGTGATTCgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071503-exon-scaffold_60-1491911889:463116..465001 | TCONS_00071503-exon-scaffold_60-1491911889:463116..465001 | Clytia hemisphaerica | exon |
| TCONS_00071503-exon-scaffold_60-1510915933:463116..465001 | TCONS_00071503-exon-scaffold_60-1510915933:463116..465001 | Clytia hemisphaerica | exon |
| TCONS_00071503-exon-scaffold_60-1575043694:463116..465001 | TCONS_00071503-exon-scaffold_60-1575043694:463116..465001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:463116..465001 . |
Blast
The following BLAST results are available for this feature:
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