TCONS_00071502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071502
Unique NameTCONS_00071502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071502 ID=TCONS_00071502|Name=TCONS_00071502|organism=Clytia hemisphaerica|type=transcript|length=240bp
CCAATTGATCCTGATTACCCAAGATGCACCGCGACCCTGAAATAGCCTAT
GGAGAAGAAGCAAGACCGACACCGACCTTGACAAAATCTTAATCGAAGGT
GATAAGTTATACAAACAGCTTGATACAAACTCCCATCTTTCGGTTGATGA
AATGCCGCGTTTCATTGAATCAAATGGTGTCATaactaatttcaattttt
tgaattttgcaaaCGGCGAAGCGAACCTGATTAATGATAN
Run BLAST on NCBI

transcript from alignment at scaffold_60:413928..414167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071502 ID=TCONS_00071502|Name=TCONS_00071502|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_60:413928..414167 (Clytia hemisphaerica)
NTATCATTAATCAGGTTCGCTTCGCCGtttgcaaaattcaaaaaattgaa
attagttATGACACCATTTGATTCAATGAAACGCGGCATTTCATCAACCG
AAAGATGGGAGTTTGTATCAAGCTGTTTGTATAACTTATCACCTTCGATT
AAGATTTTGTCAAGGTCGGTGTCGGTCTTGCTTCTTCTCCATAGGCTATT
TCAGGGTCGCGGTGCATCTTGGGTAATCAGGATCAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044403XLOC_044403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071502-exon-scaffold_60-1491911889:413928..414167TCONS_00071502-exon-scaffold_60-1491911889:413928..414167Clytia hemisphaericaexon
TCONS_00071502-exon-scaffold_60-1510915933:413928..414167TCONS_00071502-exon-scaffold_60-1510915933:413928..414167Clytia hemisphaericaexon
TCONS_00071502-exon-scaffold_60-1575043694:413928..414167TCONS_00071502-exon-scaffold_60-1575043694:413928..414167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:413928..414167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.69834	2.02457	5.76331	2.98904	8.39699	12.0006	7.98164	15.0947	0.926283	0	2.14919	1.582	1.19639	2.943	1.03372	1.0962	0	2.07621	0.956132	6.16631	4.34818	3.8176	2.06258	5.42881	1.50901	6.2794	2.46664	2.63247	2.99495	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top