TCONS_00071501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071501
Unique NameTCONS_00071501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071501 ID=TCONS_00071501|Name=TCONS_00071501|organism=Clytia hemisphaerica|type=transcript|length=316bp
CAGCCCTATTTATTCTCAAACCCACTTCGGCATAATCACCGTTGCTTTGA
gtcactttttttgttttgaaagtacCAAACAAATCCGTCACAGCGAGAAG
TTCTCCATCAAAATCAGCAATCAAGTCATCACTTCCACTGTCAGATTCTT
TAATCATACCATCCAATACAATGAATTCATTTGGATCGGTCACGTAACTT
TCGTATTCATCAAAACTATGAACAAAAGTTACAACCCAGGGCCGACCTAC
AGGTTGTCTTGAAAACTTGTTTTGAGCCAATGACCATAATTGAATATTTT
GGTTTTGAGGCAATCG
Run BLAST on NCBI

protein sequence of TCONS_00071501-protein

>TCONS_00071501-protein ID=TCONS_00071501-protein|Name=TCONS_00071501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
RLPQNQNIQLWSLAQNKFSRQPVGRPWVVTFVHSFDEYESYVTDPNEFIV
LDGMIKESDSGSDDLIADFDGELLAVTDLFGTFKTKKVTQSNGDYAEVGL
RINRA
Run BLAST on NCBI

transcript from alignment at scaffold_60:302184..302499

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071501 ID=TCONS_00071501|Name=TCONS_00071501|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_60:302184..302499 (Clytia hemisphaerica)
CGATTGCCTCAAAACCAAAATATTCAATTATGGTCATTGGCTCAAAACAA
GTTTTCAAGACAACCTGTAGGTCGGCCCTGGGTTGTAACTTTTGTTCATA
GTTTTGATGAATACGAAAGTTACGTGACCGATCCAAATGAATTCATTGTA
TTGGATGGTATGATTAAAGAATCTGACAGTGGAAGTGATGACTTGATTGC
TGATTTTGATGGAGAACTTCTCGCTGTGACGGATTTGTTTGgtactttca
aaacaaaaaaagtgacTCAAAGCAACGGTGATTATGCCGAAGTGGGTTTG
AGAATAAATAGGGCTG

Coding sequence (CDS) from alignment at scaffold_60:302184..302499

>TCONS_00071501 ID=TCONS_00071501|Name=TCONS_00071501|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_60:302184..302499 (Clytia hemisphaerica)
CGATTGCCTCAAAACCAAAATATTCAATTATGGTCATTGGCTCAAAACAA
GTTTTCAAGACAACCTGTAGGTCGGCCCTGGGTTGTAACTTTTGTTCATA
GTTTTGATGAATACGAAAGTTACGTGACCGATCCAAATGAATTCATTGTA
TTGGATGGTATGATTAAAGAATCTGACAGTGGAAGTGATGACTTGATTGC
TGATTTTGATGGAGAACTTCTCGCTGTGACGGATTTGTTTGgtactttca
aaacaaaaaaagtgacTCAAAGCAACGGTGATTATGCCGAAGTGGGTTTG
AGAATAAATAGGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044402XLOC_044402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071501-exon-scaffold_60-1491911889:302184..302499TCONS_00071501-exon-scaffold_60-1491911889:302184..302499Clytia hemisphaericaexon
TCONS_00071501-exon-scaffold_60-1510915933:302184..302499TCONS_00071501-exon-scaffold_60-1510915933:302184..302499Clytia hemisphaericaexon
TCONS_00071501-exon-scaffold_60-1575043694:302184..302499TCONS_00071501-exon-scaffold_60-1575043694:302184..302499Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071501-proteinTCONS_00071501-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:302184..302499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.894092	0	0	0	0.279348	0	0	0	1.32282	0	0	0	0.995422	0.255069	2.11435	1.47501	0	0	0	0	0	0.317647	0.454552	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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