TCONS_00071496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071496
Unique NameTCONS_00071496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071496 ID=TCONS_00071496|Name=TCONS_00071496|organism=Clytia hemisphaerica|type=transcript|length=455bp
atgaaaaaaatgtttaaaatattaaatatgGATTTCGTCATCCTGCCGAC
CgaattattaaagatatgtgGACCTCAATGATACTGAAAACATTTCACAA
CAATTCAAACGAATATACTAAACTGACGTTATCCAATCTTATGGTTGAAG
GGATTTAAATCACCAGAAGTTCCGAAGATTGAAGATATCGCAATTACCAG
TGGAACATGAGTACGCTAAAATTCAAATCCACGACAGACATTACTTTATC
ACTTTAAAATCATGGAAGTATTATTTCCTATTCATCCAAATTATGGAAAT
ATCGAATTATAGGAATGTCTTGCGATTGGATATGAACTCGACACCAAATA
AGGGATATGATGATTAATAAATGAAAGAAGAGGTGGACTTTCACCAGATC
ATCTTGAAGAGGTCACCTTTCACCAGATCAACTTGAAGCGGTCACCTTTC
ACCAG
Run BLAST on NCBI

transcript from alignment at scaffold_60:163176..163630

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071496 ID=TCONS_00071496|Name=TCONS_00071496|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_60:163176..163630 (Clytia hemisphaerica)
CTGGTGAAAGGTGACCGCTTCAAGTTGATCTGGTGAAAGGTGACCTCTTC
AAGATGATCTGGTGAAAGTCCACCTCTTCTTTCATTTATTAATCATCATA
TCCCTTATTTGGTGTCGAGTTCATATCCAATCGCAAGACATTCCTATAAT
TCGATATTTCCATAATTTGGATGAATAGGAAATAATACTTCCATGATTTT
AAAGTGATAAAGTAATGTCTGTCGTGGATTTGAATTTTAGCGTACTCATG
TTCCACTGGTAATTGCGATATCTTCAATCTTCGGAACTTCTGGTGATTTA
AATCCCTTCAACCATAAGATTGGATAACGTCAGTTTAGTATATTCGTTTG
AATTGTTGTGAAATGTTTTCAGTATCATTGAGGTCcacatatctttaata
attcGGTCGGCAGGATGACGAAATCcatatttaatattttaaacattttt
ttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044397XLOC_044397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071496-exon-scaffold_60-1491911889:163176..163630TCONS_00071496-exon-scaffold_60-1491911889:163176..163630Clytia hemisphaericaexon
TCONS_00071496-exon-scaffold_60-1510915933:163176..163630TCONS_00071496-exon-scaffold_60-1510915933:163176..163630Clytia hemisphaericaexon
TCONS_00071496-exon-scaffold_60-1575043694:163176..163630TCONS_00071496-exon-scaffold_60-1575043694:163176..163630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:163176..163630 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.33608	4.50034	1.79621	0.479266	0.58346	1.38317	1.29791	0.520752	1.09377	0.602139	0.146113	0.672341	0.575491	0.498044	1.63784	1.31824	0.866114	3.10709	0	0.641701	0.697193	0.816159	6.61432	3.9087	1.54841	0.829151	0.791009	0.422093	1.76078	2.44631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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