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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071492 ID=TCONS_00071492|Name=TCONS_00071492|organism=Clytia hemisphaerica|type=transcript|length=2376bp TTCATGTACAACTTATCTAGGCTCGGTCCTTTAAAAAAGCTACTACAAGG CCCTTCAACGATTTTGTGGAGCACAGCCTAAAGCAAAATGTAAATATTAC GATTCGAGATGGGAAATAGCGTAGGAGTGTTCAGTGCAGAGATTTAGGCA GATTTCGAGCAAAATGGCCGAGGAAGAAGACCTTGATCTCTCTGATTGGG ATGATGTTGATGAAACAGAAGCTACACAAGAACCATCCTTGTCTTCAACA GAGGCCTCCAAAGCAGAATCcgatgatgaagaagaagattgGAATGATGT TATTGCCATAGAGATCCTTGAAGATTACTGTGTCCCACTCATGAAAGAAC TTGAATCCTTTCGAAAAGATGGAATCTTGTGTGATGCTATCATTGCTGTT GATGATCGTGAATTACCTGTGcacaaaaatgttgtttcagcCATTAGTCC TTTTTTCAAAGATGTGTTTTCTAAACTCCAAGACTCTTCAGACAACAAAA TAACACTACATAATTTAACTGGGAATACAATGGATGATATTCTTCACTTT GCCTACACAGGGGAGGTGTGTGTCCATGATGGAAACGTACGCCAACTTCT TGCTACCTCTAGATTTCTTCAAATGAATAATTTAAAGGAGATTACAACTT CTTATTTGGAAAAGAAACTCAACCCTTCTTCTGCTGTTGATATACTTTTA CTGGCTGACAAGCACAAGTGTGAAAATCTCTTGGCAGCTACTGAGAAAgt cataattgataattttgttATTGTATCAAAGACTGAAGGATTCAAAAaga tgaaatttgaaatgatacACATGTTTATACAAAGTGAATACATCAGAGTT AGCAAAGAAGAAGAGGTCTATGAGGCTGTTATGCTTTGGGTAAAATCTGA CTTTGGCAATCAAAGACTTGAACGTATCAGTCAGTTACCCAACCTATTGA GAGAAATTAGATTTGCACTAATTTCTCCCCCTTATATAACAGAAATGACC ATGGATCCTACAATTCTTGAAAACTCTGAATGTTATGATATTGTAACAGA GGGATTGAATTATCATGATTCATCAGGAGTTATGTCGCCAAATCATTCCT ATGAGCCTAAATTAACAAAACCACGGAAATTAATGGAAACAGTTCTAGGT GTGATTTCAGTTGGTGGATGGGATAAAGAAAAGCCTGTCACAGATGTATA TGCTTTTGTTGAATCTAAGAAGAATTGGTTTCCTTTGAAATCAATGCCTA CTGCTTGCTATGGTCACTCAGTAGTTAACAGTGATGGCCTTATTTATGTT ATTGGTGGGAGAGATGAAAATGCCAAACTTCTAACAACTGTTACAAGATT TGATCCAGCAACCAATGATTGGAGAAGTGTTAAAAATTTGCCTTACGCTT TGACTTCAACTGGggtttgtatttttgaaggtcAAATTTATGTTGTTGGT GGCATCTCCCATAAGGGATCATTGAAATCAGTATTAAGATATAGTTCAAG ATATAATGTATGGCAAAAGGTTGCAAATTTGAAATATCCTAGAGGAGCCT GCACTGTAGTGACGGATGGGAAATTAATGTATGCAATAGGAGGAATGAGA AAGGTCGTTACTGGCCAGGATGTATCTTGGGAATATCTTGATTCAATGGA GATTTATGATAGAGATTCTAAGTCTTGGACAATGGGGAAAGATTTATTAA ACAAACGAGCATATGGTACTGCTGTTTATACTAATAAAAAGATTTATTTA ACAGGAGGTCAAAATAAATTATTGTCAAATGTCAAAGGAATTGAGCTTTA TGATACCATGAAAATTGAATGGGTTTCTATTTCTTATTTTGGAATCCAAC GCTCATTAAATGGGATTGctttaaatgaaaatacattCTTTTTGGTTGGA GGAATTTCTAAAGATGGAGAAGTTATTGATTCTGTGGAAGTTTTTGATAT GACAAGAAACCGTTCAACAAAAGTTGCAACGTTGCCAAAAACATTAAGTA TGCTACAATGTTGTACTTTACCCATGAAGTTAGCAGTGCTGCAAGGCATG GATACTGAGTTGATTGATTGAtctcttttgatttattttttttaaagcgt gcattttttcaaaactagatttaataaatacaaatttaagatttttattc GTCTATTTTTATGATTCGAAAGGTATTTTTAACAGCATTTTGGCAAAACC TCCCATTTATTTATATTTAGCAGTCAATTTTACAatcattacaaacatta caatcgACTTGCAATAGAAGAAAAAACATGAACAgtttaatttttaaatg ttaatttttcaaagcttttgaATACATTTTCCTTTCAAAGTGGTGATAAA AGGGATAGCGGAGTTTTTTTACATAA Run BLAST on NCBI protein sequence of TCONS_00071492-protein >TCONS_00071492-protein ID=TCONS_00071492-protein|Name=TCONS_00071492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MAEEEDLDLSDWDDVDETEATQEPSLSSTEASKAESDDEEEDWNDVIAIE ILEDYCVPLMKELESFRKDGILCDAIIAVDDRELPVHKNVVSAISPFFKD VFSKLQDSSDNKITLHNLTGNTMDDILHFAYTGEVCVHDGNVRQLLATSR FLQMNNLKEITTSYLEKKLNPSSAVDILLLADKHKCENLLAATEKVIIDN FVIVSKTEGFKKMKFEMIHMFIQSEYIRVSKEEEVYEAVMLWVKSDFGNQ RLERISQLPNLLREIRFALISPPYITEMTMDPTILENSECYDIVTEGLNY HDSSGVMSPNHSYEPKLTKPRKLMETVLGVISVGGWDKEKPVTDVYAFVE SKKNWFPLKSMPTACYGHSVVNSDGLIYVIGGRDENAKLLTTVTRFDPAT NDWRSVKNLPYALTSTGVCIFEGQIYVVGGISHKGSLKSVLRYSSRYNVW QKVANLKYPRGACTVVTDGKLMYAIGGMRKVVTGQDVSWEYLDSMEIYDR DSKSWTMGKDLLNKRAYGTAVYTNKKIYLTGGQNKLLSNVKGIELYDTMK IEWVSISYFGIQRSLNGIALNENTFFLVGGISKDGEVIDSVEVFDMTRNR STKVATLPKTLSMLQCCTLPMKLAVLQGMDTELID Run BLAST on NCBI transcript from alignment at scaffold_60:82644..85019 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071492 ID=TCONS_00071492|Name=TCONS_00071492|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at scaffold_60:82644..85019 (Clytia hemisphaerica) TTATGTAAAAAAACTCCGCTATCCCTTTTATCACCACTTTGAAAGGAAAA
TGTATtcaaaagctttgaaaaattaacatttaaaaattaaacTGTTCATG
TTTTTTCTTCTATTGCAAGTcgattgtaatgtttgtaatgatTGTAAAAT
TGACTGCTAAATATAAATAAATGGGAGGTTTTGCCAAAATGCTGTTAAAA
ATACCTTTCGAATCATAAAAATAGACgaataaaaatcttaaatttgtatt
tattaaatctagttttgaaaaaatgcacgctttaaaaaaaataaatcaaa
agagaTCAATCAATCAACTCAGTATCCATGCCTTGCAGCACTGCTAACTT
CATGGGTAAAGTACAACATTGTAGCATACTTAATGTTTTTGGCAACGTTG
CAACTTTTGTTGAACGGTTTCTTGTCATATCAAAAACTTCCACAGAATCA
ATAACTTCTCCATCTTTAGAAATTCCTCCAACCAAAAAGaatgtattttc
atttaaagCAATCCCATTTAATGAGCGTTGGATTCCAAAATAAGAAATAG
AAACCCATTCAATTTTCATGGTATCATAAAGCTCAATTCCTTTGACATTT
GACAATAATTTATTTTGACCTCCTGTTAAATAAATCTTTTTATTAGTATA
AACAGCAGTACCATATGCTCGTTTGTTTAATAAATCTTTCCCCATTGTCC
AAGACTTAGAATCTCTATCATAAATCTCCATTGAATCAAGATATTCCCAA
GATACATCCTGGCCAGTAACGACCTTTCTCATTCCTCCTATTGCATACAT
TAATTTCCCATCCGTCACTACAGTGCAGGCTCCTCTAGGATATTTCAAAT
TTGCAACCTTTTGCCATACATTATATCTTGAACTATATCTTAATACTGAT
TTCAATGATCCCTTATGGGAGATGCCACCAACAACATAAATTTgaccttc
aaaaatacaaaccCCAGTTGAAGTCAAAGCGTAAGGCAAATTTTTAACAC
TTCTCCAATCATTGGTTGCTGGATCAAATCTTGTAACAGTTGTTAGAAGT
TTGGCATTTTCATCTCTCCCACCAATAACATAAATAAGGCCATCACTGTT
AACTACTGAGTGACCATAGCAAGCAGTAGGCATTGATTTCAAAGGAAACC
AATTCTTCTTAGATTCAACAAAAGCATATACATCTGTGACAGGCTTTTCT
TTATCCCATCCACCAACTGAAATCACACCTAGAACTGTTTCCATTAATTT
CCGTGGTTTTGTTAATTTAGGCTCATAGGAATGATTTGGCGACATAACTC
CTGATGAATCATGATAATTCAATCCCTCTGTTACAATATCATAACATTCA
GAGTTTTCAAGAATTGTAGGATCCATGGTCATTTCTGTTATATAAGGGGG
AGAAATTAGTGCAAATCTAATTTCTCTCAATAGGTTGGGTAACTGACTGA
TACGTTCAAGTCTTTGATTGCCAAAGTCAGATTTTACCCAAAGCATAACA
GCCTCATAGACCTCTTCTTCTTTGCTAACTCTGATGTATTCACTTTGTAT
AAACATGTgtatcatttcaaatttcatctTTTTGAATCCTTCAGTCTTTG
ATACAATaacaaaattatcaattatgacTTTCTCAGTAGCTGCCAAGAGA
TTTTCACACTTGTGCTTGTCAGCCAGTAAAAGTATATCAACAGCAGAAGA
AGGGTTGAGTTTCTTTTCCAAATAAGAAGTTGTAATCTCCTTTAAATTAT
TCATTTGAAGAAATCTAGAGGTAGCAAGAAGTTGGCGTACGTTTCCATCA
TGGACACACACCTCCCCTGTGTAGGCAAAGTGAAGAATATCATCCATTGT
ATTCCCAGTTAAATTATGTAGTGTTATTTTGTTGTCTGAAGAGTCTTGGA
GTTTAGAAAACACATCTTTGAAAAAAGGACTAATGgctgaaacaacattt
ttgtgCACAGGTAATTCACGATCATCAACAGCAATGATAGCATCACACAA
GATTCCATCTTTTCGAAAGGATTCAAGTTCTTTCATGAGTGGGACACAGT
AATCTTCAAGGATCTCTATGGCAATAACATCATTCcaatcttcttcttca
tcatcgGATTCTGCTTTGGAGGCCTCTGTTGAAGACAAGGATGGTTCTTG
TGTAGCTTCTGTTTCATCAACATCATCCCAATCAGAGAGATCAAGGTCTT
CTTCCTCGGCCATTTTGCTCGAAATCTGCCTAAATCTCTGCACTGAACAC
TCCTACGCTATTTCCCATCTCGAATCGTAATATTTACATTTTGCTTTAGG
CTGTGCTCCACAAAATCGTTGAAGGGCCTTGTAGTAGCTTTTTTAAAGGA
CCGAGCCTAGATAAGTTGTACATGAA Coding sequence (CDS) from alignment at scaffold_60:82644..85019 >TCONS_00071492 ID=TCONS_00071492|Name=TCONS_00071492|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_60:82644..85019 (Clytia hemisphaerica) TCAATCAATCAACTCAGTATCCATGCCTTGCAGCACTGCTAACTTCATGG GTAAAGTACAACATTGTAGCATACTTAATGTTTTTGGCAACGTTGCAACT TTTGTTGAACGGTTTCTTGTCATATCAAAAACTTCCACAGAATCAATAAC TTCTCCATCTTTAGAAATTCCTCCAACCAAAAAGaatgtattttcattta aagCAATCCCATTTAATGAGCGTTGGATTCCAAAATAAGAAATAGAAACC CATTCAATTTTCATGGTATCATAAAGCTCAATTCCTTTGACATTTGACAA TAATTTATTTTGACCTCCTGTTAAATAAATCTTTTTATTAGTATAAACAG CAGTACCATATGCTCGTTTGTTTAATAAATCTTTCCCCATTGTCCAAGAC TTAGAATCTCTATCATAAATCTCCATTGAATCAAGATATTCCCAAGATAC ATCCTGGCCAGTAACGACCTTTCTCATTCCTCCTATTGCATACATTAATT TCCCATCCGTCACTACAGTGCAGGCTCCTCTAGGATATTTCAAATTTGCA ACCTTTTGCCATACATTATATCTTGAACTATATCTTAATACTGATTTCAA TGATCCCTTATGGGAGATGCCACCAACAACATAAATTTgaccttcaaaaa tacaaaccCCAGTTGAAGTCAAAGCGTAAGGCAAATTTTTAACACTTCTC CAATCATTGGTTGCTGGATCAAATCTTGTAACAGTTGTTAGAAGTTTGGC ATTTTCATCTCTCCCACCAATAACATAAATAAGGCCATCACTGTTAACTA CTGAGTGACCATAGCAAGCAGTAGGCATTGATTTCAAAGGAAACCAATTC TTCTTAGATTCAACAAAAGCATATACATCTGTGACAGGCTTTTCTTTATC CCATCCACCAACTGAAATCACACCTAGAACTGTTTCCATTAATTTCCGTG GTTTTGTTAATTTAGGCTCATAGGAATGATTTGGCGACATAACTCCTGAT GAATCATGATAATTCAATCCCTCTGTTACAATATCATAACATTCAGAGTT TTCAAGAATTGTAGGATCCATGGTCATTTCTGTTATATAAGGGGGAGAAA TTAGTGCAAATCTAATTTCTCTCAATAGGTTGGGTAACTGACTGATACGT TCAAGTCTTTGATTGCCAAAGTCAGATTTTACCCAAAGCATAACAGCCTC ATAGACCTCTTCTTCTTTGCTAACTCTGATGTATTCACTTTGTATAAACA TGTgtatcatttcaaatttcatctTTTTGAATCCTTCAGTCTTTGATACA ATaacaaaattatcaattatgacTTTCTCAGTAGCTGCCAAGAGATTTTC ACACTTGTGCTTGTCAGCCAGTAAAAGTATATCAACAGCAGAAGAAGGGT TGAGTTTCTTTTCCAAATAAGAAGTTGTAATCTCCTTTAAATTATTCATT TGAAGAAATCTAGAGGTAGCAAGAAGTTGGCGTACGTTTCCATCATGGAC ACACACCTCCCCTGTGTAGGCAAAGTGAAGAATATCATCCATTGTATTCC CAGTTAAATTATGTAGTGTTATTTTGTTGTCTGAAGAGTCTTGGAGTTTA GAAAACACATCTTTGAAAAAAGGACTAATGgctgaaacaacatttttgtg CACAGGTAATTCACGATCATCAACAGCAATGATAGCATCACACAAGATTC CATCTTTTCGAAAGGATTCAAGTTCTTTCATGAGTGGGACACAGTAATCT TCAAGGATCTCTATGGCAATAACATCATTCcaatcttcttcttcatcatc gGATTCTGCTTTGGAGGCCTCTGTTGAAGACAAGGATGGTTCTTGTGTAG CTTCTGTTTCATCAACATCATCCCAATCAGAGAGATCAAGGTCTTCTTCC TCGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071492-exon-scaffold_60-1491911889:82644..85019 | TCONS_00071492-exon-scaffold_60-1491911889:82644..85019 | Clytia hemisphaerica | exon |
TCONS_00071492-exon-scaffold_60-1510915933:82644..85019 | TCONS_00071492-exon-scaffold_60-1510915933:82644..85019 | Clytia hemisphaerica | exon |
TCONS_00071492-exon-scaffold_60-1575043694:82644..85019 | TCONS_00071492-exon-scaffold_60-1575043694:82644..85019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_60 | supercontig | scaffold_60:82644..85019 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00071492 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 248.44 bits (633), Expect = 1.479e-71 Identity = 163/541 (30.13%), Postives = 263/541 (48.61%), Query Frame = 2
Query: 359 FRKDGILCDAIIAVDDRELPVHKNVVSAISPFFKDVFS-KLQDSSDNKITLHNLTGNTMDDILHFAYTGEVCVHDGNVRQLLATSRFLQMNNLKEITTSYLEKKLNPSSAVDILLLADKHKCENLLAATEKVIIDNFVIVSKTEGFKKMKFEMIHMFIQSEYIRVSKEEEVYEAVMLWVKSDFGNQRLERISQLPNLLREIRFALISPPY-ITEMTMDPTILENSECYDIVTEGLNYHDSSGVMSPNHS--YEPKLTKPRKLMETVLGVISVGGWDKEKPVTDVYAFVESKKNWFPLKSMPTACYGHSVVNSDGLIYVIGGRDENAKLLTTVTRFDPATNDWRS-VKNLPYALTSTGVCIFEGQIYVVGGISHKGSLKSVLRYSSRYNVWQKVANLKYPRGACTVVTDGKLMYAIGGMRKVVTGQDVSWEYLDSMEIYDRDSKSWTMGKDLLNKRAY-GTAVYTNKKIYLTGGQNKLLSNVKGIELYDTMKIEWVSISYFGIQRSLNGIALNENTFFLVGGISKDGEV-IDSVEVFDMTRN 1960
RK LCD ++ V +++ H+ ++SA SP+F+ +F+ +L +S ++ + ++ M+ ++ FAYT ++ V +GNV+ LL + LQ+ ++E +L+++L+PS+ + I AD H C LL +K NF V ++E F + + I S+ + V EE+V+ AVM WVK ER QLP +L+ +R L+SP + + + DP I + EC D+V E NY ++ P + T+PRK + + +VGGW ++ V + W + SM G V D L+Y +GG D + L +V R+DP TN W S V TS GV + G +Y VGG L V RY + N W +VA++ R V G +YA+GG L+++E Y+ W + +R + G AVY + IY GG++ + + E Y+ +W + +RS G+A+ VGG DG + ++EVFD N
Sbjct: 61 LRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSI----QERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNY-----LLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHD-GSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSP--------LNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQD-MIYAVGGRDD-TTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGF--DGTTYLKTIEVFDPDAN 579 HSP 2 Score: 88.1965 bits (217), Expect = 5.868e-18 Identity = 66/235 (28.09%), Postives = 101/235 (42.98%), Query Frame = 2
Query: 1064 HDSSGVMSPNHSYEPKLTK------PRKLMETVLGVI-------SVGGWDKEKPVTDVYAFVESKKNWFPLKSMPTACYGHSVVNSDGLIYVIGGRDENAKLLTTVTRFDPATNDWRSVKNLPYALTSTGVCIFEGQIYVVGGISHKGSLKSVLRYSSRYNVWQKVANLKYPR-GACTVVTDGKLMYAIGGMRKVVTGQDVSWEYLDSMEIYDRDSKSWTMGKDLLNKRAYGTAV 1726
HD S ++ Y+PK + P T +GV +VGG D + V + + W + SM T G +V G +Y +GG D + L TV R++P N W ++ + G +++ IY VGG L S RY+ R N W V + R G V +G+LM A+GG YL ++E++D D+ +W + +N R G V
Sbjct: 373 HDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPL-NTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLM-AVGGFDGTT--------YLKTIEVFDPDANTWRLYGG-MNYRRLGGGV 596
The following BLAST results are available for this feature:
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