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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071491 ID=TCONS_00071491|Name=TCONS_00071491|organism=Clytia hemisphaerica|type=transcript|length=1597bp
CCATAGCACCATATAAGAAGAAATACTGCAATCTTTGAATAGTGCACGAA
ATTCTGCGGTGATCGACAATTTTGGGGGGAATTTGAAGTTAAACTCAGGC
AAAAGGAGCCTTTGAAAGTTAGACTTCAAATGAGACTTCCACTGAAAACT
TCCATGGGacaatgtttcaatttccaCAAAAAGGTCGGTATCGAATGTGA
TAAGGGCATACTACAATTTCTAGGAAAGAATGAATATTATTGAAGAAATG
AATGTCACAGCCAACTCTCTCTGTTTCGGCCTTCAACAagagacaaagga
ttttcttcaaattaaaaaaagactgaTTGGGGTAAACAGCTGGGCCTTTA
GAAGGACAAGCTGAGAGAATTCGAATTAGTGATTTGATAGTAATTGCAAG
ATTTTTGAACACAATTTCCACAACCTATATTTTACAGCATAAAGAGCGGC
GGTGCTGAATGCCGTGAAAAGAGGAATTAAATGTATACAATGCGGTAAGA
TAATGACAGGAAAAACAAAGAACAATAGTTTATGACAAAAATAGAAACGT
CTGTTCTTTTCTTGGATTGGTAATCAATCACTACTACTACtagtgaaaaa
atgaaaattattgcgACGACCCTAAATTGACTTTCATTATACCAAACCCC
ATTTACGGATGATAAAGTAATATAGAGAGTGCTCAGAGATCGGATGAGTA
TCATTTTCACAATGGTAAGAAGTTCTTTATAGAGGACCTTTGGTAATGTT
CAAGACAAAGATGACCACACAAATTCAGCATGGTGATTTCGAACGATAGC
ATGCCGTGCAAATGATAGCAAACTTCAGCAAACTAATTTTGCAGAttatt
taaaaacatcataTGGGAGTACTTCGGAAAGATGCATCGATAATACATCC
CGTCATTATATACAACAGTTTTTTTTACTGACAACCGGAAAAACAAGGTG
CATTTAAAAACAACTTAACATAGCTTGTCACCAGAAATGATAATTGATGA
TGTAATTGATTGATGATGGATGATGATGAAAAACAATGTAAGAAGCATGA
GAATCCGAAGAATATAGTTCAATTATTCGCTGgtaggtttttttataaga
acaatgttcGATAATAAATGAAGAGACAAGAGTTTTCAATGTAAAGATGT
AAGTGGTCGGAAAATTTTGACATAGCTTTTGAGTGCGCTAAAGAATGTTG
TGAAAGATCCTGAGCCACCAAAACAACCATCAAACATCAAGAAATTAGAA
CAGCAATCAGACGATTTCAACAACCCAACCAAATATTTTACATTTGTTGT
TCTTATAAGCTTGAAGATGGTTaaagaatgtttaaaagaaGTAATTAAGA
ATGCAAGAAGAAGAGATAAAGAGAAGATCAGACGCATCAACATCCGGGAG
GAGTTAATCGTCATTCAGCTACTTAATGCTGTACACACTGCATGGGATTA
AAAATAAACACCGTTTGACGTCATAGGGTGCTACTATACCCTCCCTCCCT
CCTGTCTTACGTAAGGGCATCAACAAAAAGCAGGCGATACCAACAACTCC
TTGTGTGAgctttttctataagcatatgAAAAACTTTCGTGAAGAGG Run BLAST on NCBI transcript from alignment at scaffold_60:64003..65599 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071491 ID=TCONS_00071491|Name=TCONS_00071491|organism=Clytia hemisphaerica|type=transcript|length=1597bp|location=Sequence derived from alignment at scaffold_60:64003..65599 (Clytia hemisphaerica)
CCTCTTCACGAAAGTTTTTcatatgcttatagaaaaagcTCACACAAGGA
GTTGTTGGTATCGCCTGCTTTTTGTTGATGCCCTTACGTAAGACAGGAGG
GAGGGAGGGTATAGTAGCACCCTATGACGTCAAACGGTGTTTATTTTTAA
TCCCATGCAGTGTGTACAGCATTAAGTAGCTGAATGACGATTAACTCCTC
CCGGATGTTGATGCGTCTGATCTTCTCTTTATCTCTTCTTCTTGCATTCT
TAATTACttcttttaaacattctttAACCATCTTCAAGCTTATAAGAACA
ACAAATGTAAAATATTTGGTTGGGTTGTTGAAATCGTCTGATTGCTGTTC
TAATTTCTTGATGTTTGATGGTTGTTTTGGTGGCTCAGGATCTTTCACAA
CATTCTTTAGCGCACTCAAAAGCTATGTCAAAATTTTCCGACCACTTACA
TCTTTACATTGAAAACTCTTGTCTCTTCATTTATTATCgaacattgttct
tataaaaaaacctacCAGCGAATAATTGAACTATATTCTTCGGATTCTCA
TGCTTCTTACATTGTTTTTCATCATCATCCATCATCAATCAATTACATCA
TCAATTATCATTTCTGGTGACAAGCTATGTTAAGTTGTTTTTAAATGCAC
CTTGTTTTTCCGGTTGTCAGTAAAAAAAACTGTTGTATATAATGACGGGA
TGTATTATCGATGCATCTTTCCGAAGTACTCCCAtatgatgtttttaaat
aaTCTGCAAAATTAGTTTGCTGAAGTTTGCTATCATTTGCACGGCATGCT
ATCGTTCGAAATCACCATGCTGAATTTGTGTGGTCATCTTTGTCTTGAAC
ATTACCAAAGGTCCTCTATAAAGAACTTCTTACCATTGTGAAAATGATAC
TCATCCGATCTCTGAGCACTCTCTATATTACTTTATCATCCGTAAATGGG
GTTTGGTATAATGAAAGTCAATTTAGGGTCGTcgcaataattttcatttt
ttcactaGTAGTAGTAGTGATTGATTACCAATCCAAGAAAAGAACAGACG
TTTCTATTTTTGTCATAAACTATTGTTCTTTGTTTTTCCTGTCATTATCT
TACCGCATTGTATACATTTAATTCCTCTTTTCACGGCATTCAGCACCGCC
GCTCTTTATGCTGTAAAATATAGGTTGTGGAAATTGTGTTCAAAAATCTT
GCAATTACTATCAAATCACTAATTCGAATTCTCTCAGCTTGTCCTTCTAA
AGGCCCAGCTGTTTACCCCAAtcagtctttttttaatttgaagaaaatcc
tttgtctctTGTTGAAGGCCGAAACAGAGAGAGTTGGCTGTGACATTCAT
TTCTTCAATAATATTCATTCTTTCCTAGAAATTGTAGTATGCCCTTATCA
CATTCGATACCGACCTTTTTGtggaaattgaaacattgtCCCATGGAAGT
TTTCAGTGGAAGTCTCATTTGAAGTCTAACTTTCAAAGGCTCCTTTTGCC
TGAGTTTAACTTCAAATTCCCCCCAAAATTGTCGATCACCGCAGAATTTC
GTGCACTATTCAAAGATTGCAGTATTTCTTCTTATATGGTGCTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071491-exon-scaffold_60-1491911889:64003..65599 | TCONS_00071491-exon-scaffold_60-1491911889:64003..65599 | Clytia hemisphaerica | exon |
| TCONS_00071491-exon-scaffold_60-1510915933:64003..65599 | TCONS_00071491-exon-scaffold_60-1510915933:64003..65599 | Clytia hemisphaerica | exon |
| TCONS_00071491-exon-scaffold_60-1575043694:64003..65599 | TCONS_00071491-exon-scaffold_60-1575043694:64003..65599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:64003..65599 . |
Blast
The following BLAST results are available for this feature:
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