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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071481 ID=TCONS_00071481|Name=TCONS_00071481|organism=Clytia hemisphaerica|type=transcript|length=1190bp
GCGGTCGAATAAGAGAGTGTCAACTATTATGGACAAAGATATCCAGGCAT
AAATATTAGTTCATATTTAGTTCAATTTAATAGTGTTAATATATGGtata
ctttcgtttttaatGATGAAATTGTTATAAATAACTGAGAATATAATAAT
GTTGTACAAAAGATTATAAGAAATTATGATATAGAAATTATGATATAATA
TACATTAATAGTATGTTGACCCGAATCCCAAGTTATTATAAGTACGAGGC
CAGGGACGAAGCAGAACGACTGGTTTACACCTTAATATTAGATGCATGAN
AAGCTGAATAATATAAGAAACTTATGGAAAACCTTCAATTTTAACCCTAT
GATCgggtttttcataaattattttgaatgcNCTTCTTCTTGCTTAGATG
CTCAGGCCTGAACAGGCCCCTTGCTCCTCATGACCAAGTCTTTCCAAGCA
TGACGGTCCATGGCAACTTCTTCTAGTTGAGCCAGTGCAGAACCAGTATC
AACATACATNcaacgactgcctcgttttgaaaccagtACCACGTCTATTA
TAAGCGTTAagttattaaaggttttgtttttaaataaagagtgatatcgt
ttgcttactccactcgtcaattttaatttacaagctttttcacattggat
tgacacggatgtggagcaagattggtcagaaagagaaaaagaaaacattt
ttttgcttatatcagcataatataacgataggcagacactgtcctgatat
gaaatttaTGTCTGATATGCCACGGGAAcacttaaaaataaaacctttaa
agtatTGCTTTGATTAATAGGGTAAACTTTTTATAAACTCCTCAATTACC
gaagcaatattttgaaaaggaaGTTTATTGGTTATTATAACGTGATGAGT
ATCCGAATCTTTTAGGTTTACATCCATAAactttattcagtttttttgtA
TCAGAGTATCGAAGCCATTTCCCACCAAGTTGACAAGCAGTACCATCTGC
GTTTATACATTCAATTGTTGGTTCCCCATTACTCGAAAAATCGTATCTat
gaaaagaagaagatgaagatcaGATTTACAGTTCTTTTCACCAGttgtat
tttcttttcaatatagttgatactctctaattcgatcttcaagggaccga
atcttcttaaaattagagtaattttcgaattacagagagt Run BLAST on NCBI transcript from alignment at scaffold_60:1664233..1665454- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071481 ID=TCONS_00071481|Name=TCONS_00071481|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_60:1664233..1665454- (Clytia hemisphaerica)
GCGGTCGAATAAGAGAGTGTCAACTATTATGGACAAAGATATCCAGGCAT
AAATATTAGTTCATATTTAGTTCAATTTAATAGTGTTAATATATGGTATA
CTTTCGTTTTTAATGATGAAATTGTTATAAATAACTGAGAATATAATAAT
GTTGTACAAAAGATTATAAGAAATTATGATATAGAAATTATGATATAATA
TACATTAATAGTATGTTGACCCGAATCCCAAGTTATTATAAGTACGAGGC
CAGGGACGAAGCAGAACGACTGGTTTACACCTTAATATTAGATGCATGAN
GCATTATCAGATTGCATTATCAGATGCATGAGAAGCTGAATAATATAAGA
AACTTATGGAAAACCTTCAATTTTAACCCTATGATCGGGTTTTTCATAAA
TTATTTTGAATGCNCTTCTTCTTGCTTAGATGCTCAGGCCTGAACAGGCC
CCTTGCTCCTCATGACCAAGTCTTTCCAAGCATGACGGTCCATGGCAACT
TCTTCTAGTTGAGCCAGTGCAGAACCAGTATCAACATACATNCAACGACT
GCCTCGTTTTGAAACCAGTACCACGTCTATTATAAGCGTTAAGTTATTAA
AGGTTTTGTTTTTAAATAAAGAGTGATATCGTTTGCTTACTCCACTCGTC
AATTTTAATTTACAAGCTTTTTCACATTGGATTGACACGGATGTGGAGCA
AGATTGGTCAGAAAGAGAAAAAGAAAACATTTTTTTGCTTATATCAGCAT
AATATAACGATAGGCAGACACTGTCCTGATATGAAATTTATGTCTGATAT
GCCACGGGAACACTTAAAAATAAAACCTTTAAAGTATTGCTTTGATTAAT
AGGGTAAACTTTTTATAAACTCCTCAATTACCGAAGCAATATTTTGAAAA
GGAAGTTTATTGGTTATTATAACGTGATGAGTATCCGAATCTTTTAGGTT
TACATCCATAAACTTTATTCAGTTTTTTTGTATCAGAGTATCGAAGCCAT
TTCCCACCAAGTTGACAAGCAGTACCATCTGCGTTTATACATTCAATTGT
TGGTTCCCCATTACTCGAAAAATCGTATCTATGAAAAGAAGAAGATGAAG
ATCAGATTTACAGTTCTTTTCACCAGTTGTATTTTCTTTTCAATATAGTT
GATACTCTCTAATTCGATCTTCAAGGGACCGAATCTTCTTAAAATTAGAG
TAATTTTCGAATTACAGAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071481-exon-scaffold_60-1575043694:1665155..1665454 | TCONS_00071481-exon-scaffold_60-1575043694:1665155..1665454 | Clytia hemisphaerica | exon |
| TCONS_00071481-exon-scaffold_60-1575043694:1664233..1665122 | TCONS_00071481-exon-scaffold_60-1575043694:1664233..1665122 | Clytia hemisphaerica | exon |
| TCONS_00071481-exon-scaffold_60-1510915933:1665155..1665454 | TCONS_00071481-exon-scaffold_60-1510915933:1665155..1665454 | Clytia hemisphaerica | exon |
| TCONS_00071481-exon-scaffold_60-1510915933:1664233..1665122 | TCONS_00071481-exon-scaffold_60-1510915933:1664233..1665122 | Clytia hemisphaerica | exon |
| TCONS_00071481-exon-scaffold_60-1491911889:1665155..1665454 | TCONS_00071481-exon-scaffold_60-1491911889:1665155..1665454 | Clytia hemisphaerica | exon |
| TCONS_00071481-exon-scaffold_60-1491911889:1664233..1665122 | TCONS_00071481-exon-scaffold_60-1491911889:1664233..1665122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1664233..1665454 - |
Blast
The following BLAST results are available for this feature:
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