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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071475 ID=TCONS_00071475|Name=TCONS_00071475|organism=Clytia hemisphaerica|type=transcript|length=1925bpRun BLAST on NCBI transcript from alignment at scaffold_60:1563676..1591493- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071475 ID=TCONS_00071475|Name=TCONS_00071475|organism=Clytia hemisphaerica|type=transcript|length=27818bp|location=Sequence derived from alignment at scaffold_60:1563676..1591493- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071475 vs. Swiss-Prot (Human)
Match: DBNL (Drebrin-like protein OS=Homo sapiens GN=DBNL PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.032e-46 Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 2
Query: 62 MSVNLNKYKSDLVKAWEELRNPKSDNDWVIFGYDGQSSDLKVQSQGEDGIVEMIDDFNGGKIQYGGARVIDPNTNLPKIVFINWQGEGVPANVKGKCANHLRDITNLFRGAHVQINARCDDDVEEDVIMEKVKNASGANYSFHKEKPKA--FVPQGKIGSVYQRSRPDLDKAFQDKGKFWA 598
M+ NL++ L +A+ + KS DW +F Y+G S+D++V GE G+ EM+++ N GK+ Y RV DPN+ LPK V INW GEGV KG CA+H+ + + +GAHV INAR ++DVE + IMEKV ASGANYSFHKE + PQ +GSVYQ++ + K FWA
Sbjct: 1 MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVAKASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGKDSFWA 181 HSP 2 Score: 96.6709 bits (239), Expect = 3.400e-21 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 2
Query: 1316 AGGGITAKALFDYQAVDGTEISFDPGDLITNIEKIDDGWWRGEAPDGSYGLFPANYVEEI 1495
+G G+ A+AL+DYQA D TEISFDP +LIT IE ID+GWWRG PDG +G+FPANYVE I
Sbjct: 370 SGQGLCARALYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELI 429 The following BLAST results are available for this feature:
BLAST of TCONS_00071475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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