TCONS_00071471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071471
Unique NameTCONS_00071471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071471 ID=TCONS_00071471|Name=TCONS_00071471|organism=Clytia hemisphaerica|type=transcript|length=622bp
GTTTGTGCTAGGTCATGAACGATGCTACAATAATTTTTATACACACGAGA
TATATTTAATTGACTGAGAAACTCGCTTGAGATATGGTTCCACTTGAAGA
TGAATCGGAGGTTGTGGAGACTATGGAACACTTCAGTGGGAACGCTGAAG
AAGCACTCTTGAAATGGTGTGAAAACATCGTCGCtgaCTATTCCAATGCA
TCAGTCAAATCATTTCAACCAAAGAAATGGCGAAAAGGGTACACGCTGAA
TGCTATCTTGCATGCTTTCAAACCCGATCTATTCCGATATTCCGATTTAA
CCAACATGAGCAGCGTGGAACGGATTCAACATGCGTTGCATCATGCAGAA
GAAAGTTTTGATGTTCACGCCCTCTTTACTGCAGATGAATTCCATGATGG
CTCAGTAGACAACAAGGCGTTGGTTCTCTACGTCAGCAGTCTGTATGCGA
AAATGAAGGATATGGAGCTACCAGGAGTTGACCAGTCGGGATCAGAAATG
GAAGGTCTTTTATCACAACTCACCGAATGTGAAGTCGAGTTAAAAACTTT
GGACAGCAAAGAAGTTCCCGAATTGTATATCATACCTGAAAATGAAGCTG
TTTTAGAAAGCAAACACAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1545676..1548054-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071471 ID=TCONS_00071471|Name=TCONS_00071471|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_60:1545676..1548054- (Clytia hemisphaerica)
GTTTGTGCTAGGTCATGAACGATGCTACAATAATTTTTATACACACGAGA
TATATTTAATTGACTGAGAAACTCGCTTGAGATATGGTTCCACTTGAAGA
TGAATCGGAGGTAAAAACACTAAATTATAAAAGACATTTTAATTCAAGAG
TTCCTTTTAAACTATGTTTTATGGTTTTTATTTTATTTTTTTATGCCTTG
TGCAAGGTTTTCAATATCGTACGTATTATAACGGATCATCCATTCTGCTC
ACAATACGCTCTACTCCAAAGGGATGTTGCGAATGCGATGATCTATCAAG
GCAAATCATTTAAAACTGCGTTGTTGTTTTTTGACTGATAACGAAAACAA
AAGCTTTTATTATCGTTAGTTGGTTTTGTTTTTACATTCAATTACTTATT
TAGGTTGTGGAGACTATGGAACACTTCAGTGGGAACGCTGAAGAAGCACT
CTTGAAATGGTGTGAAAACATCGTCGCTGAGTAAGGATAATTTTTTCTGA
TTTGGCTCGCCATATTAAGCTTGCGTCCCTTTATGTCGGCTACAGACTTA
TAGGTTCATAGAGTAGATATTTTACGTGGATAGCGCCCAGTAATCTAAGA
CAGTCTTTTAATTGTTTTCACGGGGTCTACAGCAGCCGACTCAGCCATCT
AATGAGCTTGACAGAATATTTTTAGGAGCGGGGACTTGAACTGCGGACCC
CTGGTTTGTAGCACTGACGCCATTGACCATTAGGTCATCACCATCATTAC
TATTCCCTTATAGACCGATTTGACAAAATCCAGTTAGGGACTATCTTCAA
ACAAACCTCAAGCAAGCTGCCTGTTCCTAACTGAAAAAAACTTTACCCAC
GAAACTATGCACAGGTCTAAACGGTCGAAATATTTGAAGATTTTGAGCTA
TCAAGGTGTTTAAATAATCATCCTGTACATATTCTTTCTACCATTTGTTA
GAAAAAATGGCTGATCGTGGGTGAAGATGACGTCACACGGAATCGGTCTA
TAGCTTTTGGGATTTATCTACCCCATGTAACATATTTTATTTAATACTTT
TGCACCTCTACTGCCTGTATTTTTAGTGTATTTAAAGTGATGTTTGATTG
TCCTTTCTGTATCTTTCAGCTATTCCAATGCATCAGTCAAATCATTTCAA
CCAAAGAAATGGCGAAAAGGGTACACGCTGAATGCTATCTTGCATGCTTT
CAAACCCGATCTATTCCGATATTCCGATTTAACCAACATGAGCAGCGTGG
AACGGATTCAACATGCGTTGCATCATGCAGAAGAAAGTTTTGATGTTCAC
GCCCTCTTTACTGCAGATGGTAATAATTATATGGTTTTAAATCTTTCAAT
AAAAAAACCCATTTAGACGCGGTGTTATTAAATCAGCCCTAAAGTAGCAG
TATTTTAGTAGGTCTCCAAGACCGTGAAAAACCCATGTGATCATAAGAGT
CAAGTTTGGTTCTTGATTATTTTTTATGAAACTAAATTCAGGTAAGTAAA
GCCAAGCCTTTCACGGCCTCTTTCAACCTTCTCTATGAAAAACCTAACGG
TCTCCACTCAATATAATATTGTTTGTGGTTTTTGAACATTATTTTTATAG
CCTTTACATTTAACTTTTTTGGTTTTCAAAGTTTTAAGTGTTACTCAAGA
AGAAGTTATATAAGCTCCACGTATACAAGATTTTACTATATCATCACAGA
AAAAAGTCATAACAGGTCAGGCTTCTAAACAGGTGGTTGATTAATATAAC
GTTTTCCTCTTAATAGAATTCCATGATGGCTCAGTAGACAACAAGGCGTT
GGTTCTCTACGTCAGCAGTCTGTATGCGAAAATGAAGGATATGGAGCTAC
CAGGAGTTGACCAGGTTGGTGATAACTTATAGCTACAGTATGACTTTGTC
TCAATGCAGTATCTTATTTTCCATTAAGTTGTTTTTAAATTTTATTCTGG
ACCTCCGTGCTTTGAAGAAAGTTTTCATTTATTTTGATGCCGAACGCCTG
GTTCTTTTCTGCCATTTCTGTATAAGACATCTCAAATATAATCCGAGATT
GATTCGCCTTATGGATACGATATAGTGGTTTTTGATTCTACTTATAACCT
TTATAATCAAACCTTTATAGCGATTGTTTTTTCCCGAGAACAAGCATACA
TCAGCCGTAGTTCACCCGATAAATTCCTCAAACCTGGACTTTTTATTCCA
ATTTCTTTTTTTGATATATCATCTTTAAATTTCACCTTTTAGTCGGGATC
AGAAATGGAAGGTCTTTTATCACAACTCACCGAATGTGAAGTCGAGTTAA
AAACTTTGGACAGCAAAGAAGTTCCCGAATTGTATATCATACCTGAAAAT
GAAGCTGTTTTAGAAAGCAAACACAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044376XLOC_044376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071471-exon-scaffold_60-1575043694:1547945..1548054TCONS_00071471-exon-scaffold_60-1575043694:1547945..1548054Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1575043694:1547575..1547651TCONS_00071471-exon-scaffold_60-1575043694:1547575..1547651Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1575043694:1546736..1546935TCONS_00071471-exon-scaffold_60-1575043694:1546736..1546935Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1575043694:1546191..1546288TCONS_00071471-exon-scaffold_60-1575043694:1546191..1546288Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1575043694:1545676..1545812TCONS_00071471-exon-scaffold_60-1575043694:1545676..1545812Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1510915933:1547945..1548054TCONS_00071471-exon-scaffold_60-1510915933:1547945..1548054Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1510915933:1547575..1547651TCONS_00071471-exon-scaffold_60-1510915933:1547575..1547651Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1510915933:1546736..1546935TCONS_00071471-exon-scaffold_60-1510915933:1546736..1546935Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1510915933:1546191..1546288TCONS_00071471-exon-scaffold_60-1510915933:1546191..1546288Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1510915933:1545676..1545812TCONS_00071471-exon-scaffold_60-1510915933:1545676..1545812Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1491911889:1547945..1548054TCONS_00071471-exon-scaffold_60-1491911889:1547945..1548054Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1491911889:1547575..1547651TCONS_00071471-exon-scaffold_60-1491911889:1547575..1547651Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1491911889:1546736..1546935TCONS_00071471-exon-scaffold_60-1491911889:1546736..1546935Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1491911889:1546191..1546288TCONS_00071471-exon-scaffold_60-1491911889:1546191..1546288Clytia hemisphaericaexon
TCONS_00071471-exon-scaffold_60-1491911889:1545676..1545812TCONS_00071471-exon-scaffold_60-1491911889:1545676..1545812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1545676..1548054 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.268805	0	1.60531	0.0168532	2.16756	0.907989	0	0	0	0	0	0.216565	0.00748006	0	0	0.462627	0	0	1.24634	0.804721	4.93983	6.24861	4.66012	6.2536	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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