TCONS_00071469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071469
Unique NameTCONS_00071469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071469 ID=TCONS_00071469|Name=TCONS_00071469|organism=Clytia hemisphaerica|type=transcript|length=821bp
AAAGTCGAAGATGAATTGGCGGGAGTCATGAAAGAGATCGATGATGCGCC
GAATCTCTCAGATGAAAATAAAGCGCCGTTACTTGAAAAACTGACTACAT
TAGTTCAATTGCATGCTGACATCAAGGAGAAATGGGACACTTGTAAACAC
AGCTTTTTGATCAAACTTAATCAACACATGGGGAAAGAAACAGCCCTTTC
TAAACTATCCACACAACTAGGAGAATGCGAAAAACAGTTGAACGTTTTAA
ACAGCAAAGAAGTTCCCGAATTATACCTTTTCCCAGAAAGCAGGGCTGTC
ATGGAGGCACAACACAAGGAAATGCAAGACTCACTTGACCAAGTTGAATA
TGAACTAGCAGGAGTCATACAAGAGCTTGATGACGTGCCAAATCTTTCTG
GTGAAGATAAAGCGCCATTACTTGAAAAACTTACCACATTAGCTCAATTA
CACGCTGACATCAAGGAGAAATGGGATACTTGTAAAGATAGCTTTCTGAT
CAAATTGGACCAGCACGCGGGTAAAGAAATGGCTCTTTCGAATCTATCTA
CACATTtggaaaaatgtgaaaaacagTTACAATTACTGAACAATAAAGAA
GTACCAGAACTTTATCTTCTACAAGAAAATAGAGCTGTTATGGAGGCACA
ACACAAGGAAATGCAAGACTCACTAGACGTAATCGAAGAAGACTTATCTA
AAGTTATGCAAGCTCTCGATGACCCAAATCTAACAGATGAAGATAAAGCA
CCATTACTTGAAAAACTAACCGTTTTAGTTCAATTGCATGCTGATATCAA
AGAAAAATGGGATACTTGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_60:1542632..1545509-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071469 ID=TCONS_00071469|Name=TCONS_00071469|organism=Clytia hemisphaerica|type=transcript|length=2878bp|location=Sequence derived from alignment at scaffold_60:1542632..1545509- (Clytia hemisphaerica)
AAAGTCGAAGATGAATTGGCGGGAGTCATGAAAGAGATCGATGATGCGCC
GAATCTCTCAGATGAAAATAAAGCGCCGTTACTTGAAAAACTGACTACAT
TAGTTCAATTGCATGCTGACATCAAGGAGAAATGGGACACTTGTAAACAC
AGGTATATATCTAGCTTGTCCTCTTATGACAGCTTGATATTTTTTGCGAA
GCGAATTTATGAGCGAAGCAGTTTTGCTATATTGTGCACGTACCTTTAAC
TTCTATCCCAAGCGAAAATTTGCTATAAAATTTGCTATATAAATCACATC
TACAAACCGATGATTTTATCAAAATGACCTTGAATGGTTTGGCTTGAAGC
CACGAAAACCTTCTTGGTTTGGTAGCTAGAACTGCGAAAAAGGCAGATGA
GATGGAGTTTTTATAAGATACTATAATAATTGGTCATTTGATGTAATAAA
AATGCACGTTCTTTAGAAAAAGTAAGAAAATTGTTTTATTACTGGTTAAC
AACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCATCTCGTCCCGAAA
AAGGCCGTTTTAAAATGGTGTACCCTAGCAGTGAACAGCAACAAAATTAC
CAAGTTACCGCGCGTGCGACACGCATCTAAGCAATCTAAGCAGTGGTTCT
TCGGTTTTAAATGTTTATTTTGCTGTTAAATGGAAAAAAATTAGTTTGAA
CGTTGACAGAAAGGATCTTCATCATCCCTTGACTTTTAACAGCAAGTATC
AAGTATCTAATAAGGTCAATTAATGAGAGATTTTTGCAAGTCGGGCGCGA
GGAGTGCTCTTCTAGTGAACGAAACTTACCTTGCAAAACCAAGTGGATAT
TCTATGATAAAGAAGTACGGAGGCAAGCGGAGGTAATCGAATTTGTCGAA
TTTGTCAAGAAATAAATCAAAACTACCCAAGAACCAACAAGCCATCTTTG
TACATTTTTGTTTTTGTTTTATTTTTATCTTTTGGACGATTCGTGATTCG
AATAAAAATGTTCGATCGTTCAACGAATATCGTTCGATTTTATTAAGGCA
CCATTTACACTAGAATAACTAGTAGGAAAAAAAGAGCGATGCGCGGCGGA
TGGCGGCGGGTGTTGTGCTGCCGTAGATTATGTGGTGTGTTTGGGGCATT
AAGGCTCTTACGACCCTGGCTCTATAGAATAGCGGCTTTATTAGAGTGAT
TTTTAGAGTGTCTCTTATTTTGCTAGCAACTTGCGAGTTAAGGTGGAGTC
TGGATCGCTTCGCAACCCTTATACAATACGGCTAGTTCAAGGCTTTCTTT
TACCCCATCTAAAATCGAAATCAAAAAAAATTTGAAAGTGCAATCCTTGT
CTGACTGAAGTCGGCTATTCATCGGTTGCTTGCTTGCTTTATCTATCCAG
AAGTAATTTTGACACTGTTAAAATACTACAATGTTTTTTATATTTGACTT
TGTTTTCAGCTTTTTGATCAAACTTAATCAACACATGGGGAAAGAAACAG
CCCTTTCTAAACTATCCACACAACTAGGAGAATGCGAAAAACAGTTGAAC
GTTTTAAACAGCAAAGAAGTTCCCGAATTATACCTTTTCCCAGAAAGCAG
GGCTGTCATGGAGGCACAACACAAGGTAGGCGGTAATACAATTTTTGTTA
GGTTGCACTTTGATGCAATTCGAGCAATCACATACTTTTGTCAAACTCAA
TAAGGAGACTGAGCAAAACAATGATCATGTCAAGTTATTCGAACCCGTTG
TTGTTGTTTTAGTGGTATAAGTACTAGTCTTTCCTATTCAAAGAAATATC
ACGCGAATTTTACTTTGCATTCTCAGGAAATGCAAGACTCACTTGACCAA
GTTGAATATGAACTAGCAGGAGTCATACAAGAGCTTGATGACGTGCCAAA
TCTTTCTGGTGAAGATAAAGCGCCATTACTTGAAAAACTTACCACATTAG
CTCAATTACACGCTGACATCAAGGAGAAATGGGATACTTGTAAAGATAGG
TATGGATTTATATAGTTTCATGATATTTGATATTTGATCTGGCGAATCTT
CTAACGAAATAAACTTTGACAAACTGCATTTTCTAATCTTTTCAGCTTTC
TGATCAAATTGGACCAGCACGCGGGTAAAGAAATGGCTCTTTCGAATCTA
TCTACACATTTGGAAAAATGTGAAAAACAGTTACAATTACTGAACAATAA
AGAAGTACCAGAACTTTATCTTCTACAAGAAAATAGAGCTGTTATGGAGG
CACAACACAAGGTAACAGGGAAGATGACATCTAAATACAGCATGCTATAA
AAATGAAGTTTGCTTTAAAATCTCACCCCATCATGTCATAAAGACATGAA
AACTAGGTGATCTATCCTTTGAGCCTGGTTTAGATTTGTTAGAACACGTA
GATTCGTATCATCTTCTATGAAGATAGGTTTCGACTTCAAACTAGATATT
TTCACTTTTTTTCATATCTGACTTTTCCTCTTGAGATGATGATGAAGACC
TTTCTCATTAAAACAGCCAGAACCTTATTCGTTTTCATAACACTGAAAGA
TAAAAGCAAATTATCATCTTTTGCTCTGGATATTCTTGACCTGATTAATT
TTCTCGGACTTTCTTTATTGGCCGAAATCGTCAGTCGGTTTCAGGTTGGT
TACGCTTGCAATTAGGAAATATCACACCTATAGACACTGTATTTTTACCA
TTTGTTAATTTTAGGAAATGCAAGACTCACTAGACGTAATCGAAGAAGAC
TTATCTAAAGTTATGCAAGCTCTCGATGACCCAAATCTAACAGATGAAGA
TAAAGCACCATTACTTGAAAAACTAACCGTTTTAGTTCAATTGCATGCTG
ATATCAAAGAAAAATGGGATACTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044375XLOC_044375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071469-exon-scaffold_60-1575043694:1545358..1545509TCONS_00071469-exon-scaffold_60-1575043694:1545358..1545509Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1575043694:1543885..1544050TCONS_00071469-exon-scaffold_60-1575043694:1543885..1544050Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1575043694:1543511..1543683TCONS_00071469-exon-scaffold_60-1575043694:1543511..1543683Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1575043694:1543249..1543414TCONS_00071469-exon-scaffold_60-1575043694:1543249..1543414Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1575043694:1542632..1542795TCONS_00071469-exon-scaffold_60-1575043694:1542632..1542795Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1510915933:1545358..1545509TCONS_00071469-exon-scaffold_60-1510915933:1545358..1545509Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1510915933:1543885..1544050TCONS_00071469-exon-scaffold_60-1510915933:1543885..1544050Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1510915933:1543511..1543683TCONS_00071469-exon-scaffold_60-1510915933:1543511..1543683Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1510915933:1543249..1543414TCONS_00071469-exon-scaffold_60-1510915933:1543249..1543414Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1510915933:1542632..1542795TCONS_00071469-exon-scaffold_60-1510915933:1542632..1542795Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1491911889:1545358..1545509TCONS_00071469-exon-scaffold_60-1491911889:1545358..1545509Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1491911889:1543885..1544050TCONS_00071469-exon-scaffold_60-1491911889:1543885..1544050Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1491911889:1543511..1543683TCONS_00071469-exon-scaffold_60-1491911889:1543511..1543683Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1491911889:1543249..1543414TCONS_00071469-exon-scaffold_60-1491911889:1543249..1543414Clytia hemisphaericaexon
TCONS_00071469-exon-scaffold_60-1491911889:1542632..1542795TCONS_00071469-exon-scaffold_60-1491911889:1542632..1542795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1542632..1545509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12378	1.31314	5.63885	2.73173	26.6621	21.1509	14.1214	18.0017	6.74517	9.58995	3.67227	5.92528	5.94938	5.38681	2.27922	3.13373	8.83185	7.16718	8.37795	10.9594	11.2709	10.7493	4.43951	8.84726	18.161	15.0534	1.05427	1.84619	0.243824	0.531948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top