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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071463 ID=TCONS_00071463|Name=TCONS_00071463|organism=Clytia hemisphaerica|type=transcript|length=1447bpRun BLAST on NCBI protein sequence of TCONS_00071463-protein >TCONS_00071463-protein ID=TCONS_00071463-protein|Name=TCONS_00071463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MGWNNRVPNPNQLKWNPFDIPPKDTDFVDGLSTICGSGDPKTRHGIAVHVRun BLAST on NCBI transcript from alignment at scaffold_60:1499157..1507389- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071463 ID=TCONS_00071463|Name=TCONS_00071463|organism=Clytia hemisphaerica|type=transcript|length=8233bp|location=Sequence derived from alignment at scaffold_60:1499157..1507389- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1499157..1507389- >TCONS_00071463 ID=TCONS_00071463|Name=TCONS_00071463|organism=Clytia hemisphaerica|type=CDS|length=12780bp|location=Sequence derived from alignment at scaffold_60:1499157..1507389- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071463 vs. Swiss-Prot (Human)
Match: HGD (Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=HGD PE=1 SV=2) HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0 Identity = 276/435 (63.45%), Postives = 329/435 (75.63%), Query Frame = 2
Query: 5 YFSGFGNELASE--AIENALPERGNTPQKCPYNLYAEQLSGTAFTCPRTANRRSWFYRILPSVKHSPFKPYEIKNFTMGWNNRVPNPNQLKWNPFDIPP---KDTDFVDGLSTICGSGDPKTRHGIAVHVYACNKSMANRCFCNSDGDFLIVVQQGSLLVTTEFGKMKVDQEEICVVQQGMRFSIDVDGPSRGYILEVYDGHFEIPDLGPIGANGLANPRDFKTPQASYDENFMRPDGFEIIQKYQGYTFKATQDHTVFDVVAWHGNYTPYKYSLKDFCVINSVSFDHIDPSIFTVLTCQSNKPGVAIADFVIFPPRWSVQENTFRPPYYHRNCMSEYMGIIKGGYEAK--AVTPGCSTLHSMMIPHGPASNVFEAASNATLKPERVAEGTMSFMFESSLGLALTEWGEKTCEKVDENYSKCWQGLEAKFDKNLK 1288
Y SGFGNE +SE +LPE N PQ CPYNLYAEQLSG+AFTCPR+ N+RSW YRILPSV H PF+ + T W+ P+PNQL+W PF+IP K DFV GL T+CG+GD K+ +G+A+H++ CN SM NRCF NSDGDFLIV Q+G+LL+ TEFGKM V EICV+Q+GMRFSIDV +RGYILEVY HFE+PDLGPIGANGLANPRDF P A Y E+ P G+ +I KYQG F A QD + F+VVAWHGNYTPYKY+LK+F VINSV+FDH DPSIFTVLT +S +PGVAIADFVIFPPRW V + TFRPPYYHRNCMSE+MG+I+G YEAK PG +LHS M PHGP ++ FE AS L PER+A+GTM+FMFESSL LA+T+WG K +DENY KCW+ L++ F N +
Sbjct: 6 YISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGQVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWY-EDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEKASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNSR 439 The following BLAST results are available for this feature:
BLAST of TCONS_00071463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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