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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071435 ID=TCONS_00071435|Name=TCONS_00071435|organism=Clytia hemisphaerica|type=transcript|length=1442bpRun BLAST on NCBI transcript from alignment at scaffold_60:1367961..1393786- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071435 ID=TCONS_00071435|Name=TCONS_00071435|organism=Clytia hemisphaerica|type=transcript|length=25826bp|location=Sequence derived from alignment at scaffold_60:1367961..1393786- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071435 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 9.400e-36 Identity = 83/228 (36.40%), Postives = 116/228 (50.88%), Query Frame = 2
Query: 383 DMLEGDIVLTPKLRKYLNNQRDGKAISAFDAAVSKAWPKSGPYARVPYTFARGFSYKSVVGQAIAEYNAKTCIRFVPRRSSDRSYVEFMHGGGCYSMIG-RVGGKQQISLGNGCGTKGVAIHEMMHALGFFHEQSRRDRDTYIQIMWQNIPGRVRYNFEKYRHGEAQTLGQPYDKRSVMHYGNYAFSTNRQKTIVSK-SNPNEVLGQRQGLSVIDIRQLKTMYKCGGT 1060
D+ EGDI L R + N G+ WP + PY + + K V+ A Y KTCI F P + + +Y+ G GC+S +G R GKQ++S+G C HE +HALGF+HEQSR DRD Y++IMW I +NF Y + +L PYD SVMHY AF + TIV++ S+ +V+GQR S D+ +L +Y C +
Sbjct: 47 DLFEGDIRLD---RAQIRNSIIGEKYR---------WPHTIPYVLED---SLEMNAKGVILNAFERYRLKTCIDFKPW-AGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSS 258 The following BLAST results are available for this feature:
BLAST of TCONS_00071435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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