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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071433 ID=TCONS_00071433|Name=TCONS_00071433|organism=Clytia hemisphaerica|type=transcript|length=2267bpRun BLAST on NCBI transcript from alignment at scaffold_60:1359972..1393786- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071433 ID=TCONS_00071433|Name=TCONS_00071433|organism=Clytia hemisphaerica|type=transcript|length=33815bp|location=Sequence derived from alignment at scaffold_60:1359972..1393786- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071433 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 145.206 bits (365), Expect = 4.278e-37 Identity = 91/248 (36.69%), Postives = 121/248 (48.79%), Query Frame = 2
Query: 368 LIKEED-----MLEGDIVLTPKLRKYLNNQRDGKAISAFDAAVSKAWPKSGP-YARVPYTFARGFSYKS--VVGQAIAEYNAKTCIRFVPRRSSDRSYVEFMHGGGCYSMIGRVGGKQQISLGNGCGTKG--VAIHEMMHALGFFHEQSRRDRDSYITINWNNIPGRVRYNFEKYRHGQAQTLGQPYDKKSVMHYGNYAFSTNRQKTIVSKSNPNEVLGQRRGLSTIDIRQLKTMYKCGGVKPIPTQR 1081
LI EE ++EGDI+ R +A S WP G VP+ + + S V+ +A+AE+ TCIRFV R ++ + GC+S +GR GG Q +SL C KG + +HE+MH LGF+HE +R DRD YI +NWN I NF K Q+ + PYD SVMHYG AFS TI P+ +GQR LS DI ++ +Y C P P R
Sbjct: 62 LILEETPESSFLIEGDIIRPSPFR--------------LLSATSNKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFV-TYQDQRDFISIIPMYGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIK---SQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSPSGPRPRGR 291 The following BLAST results are available for this feature:
BLAST of TCONS_00071433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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