TCONS_00071427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071427
Unique NameTCONS_00071427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071427 ID=TCONS_00071427|Name=TCONS_00071427|organism=Clytia hemisphaerica|type=transcript|length=1875bp
CAAAAAGCTGATGTATAAAATGGCCGAGCTTGGCTGGTCTAGCcagaatc
aaagaaaaaagtatcAGATAGTGCCAAAAGATTTGTAAGGAAAATGAAGA
TCGTTTGTTTGTGTGTCCTTGCTTTcgCATTTGCAAATGGACGACCAGAC
GGCAACAGCCATGCTGATATCCTGACTATCAACCAAAAGATGTTTGAAAA
GGCGGAAAAGGCTGTTTCAGGATTTTCAAGCAACTCTAACATCAAAGAAC
GAGACATGCTTGAAGGAGACATCGTCTTGACACCGAAATTGAGGACATAT
TTGGACAACCAGAGAAGTGGAGCACAAATCAGTCCTTTTGATGCTGCTGT
CCGAAGCAAATGGCCCAACGCACGTATTCCGTTCACATATAATCGATTGT
CTTCTGACTACAGAAAAGCAGTAAATGAGGCAATCGCAGAATATAACCAA
AAAACATGCATCCGTTTTGTTCCAAAAACATCAAGGGACAAGAGTTGGAT
CGAGTTCATGCATGGAGGAGGATGCTACTCAATGATTGGTCGTGTCGGAG
gaaaacaacaaatttcatTGGGTAACGGATGTGGAAGCAAAGGTGTCGCC
ATTCATGAAATGATGCATGCTTTAGgatttttccaTGAACAATCAAGGAG
AGATCGCGATGAATATGTTTCCATCCAATGGCAATACATTCCTGGAAATA
TCAGATATAACTTTGAGAAGTACAGACATGGACAAGCAGACACACTGGGT
GCACCTTATGACAAAAAGTCCATCATGCACTATTCAAACAAAGCTTTCTC
AATCAACGGTAAGCCAACCATTGTTTCACGAAGTGACCGAAATGAGATCC
TTGGTCAAAGAGACGGATTGAGTGTAATCGATATCAAGCAATTAAGAAAG
TTATACCAATGTAAAGGTGAAGAAAAAGTCGTCATTACTGAAGAATGTAA
AGACAAACATGAACTTTGTCCAACTCTGGCTAAAGAACGATTATGCACTG
TCACTGTTAGTGATTGGGTTAAAGACAATTGTCAAAAATCTTGCGATACA
TGCCCAACACCTGCACCACAGAAACCCTCGTGTGTACCAAATGAGAGAGC
AAAGCATTGTGGTCAATGGAAAAGACAAGGATATTGTGACCCAACCAGCA
AATACTCGAGCTGGATGGGTAAAAATTGTAAGGCCTGTGGGAAGTGCATT
TGATGCGTTTTCGATGTGATCAATTTATATCGTTgatactgtgaaatatt
ctGTCAAAtgtttttacacatttttttatatgtaACTCCAActcgggtca
gggctggggcTATTTAGCATTCTTGCTCATATCCTGAAAAATTGGCTTTG
ATCACTCCTGATATTATACCTTAGATTAtttgaaaagcttttactttacg
agatagtgaaaaaGATTGGCTAATTTCAGTGCTCTAGCCTCAGCAACCTA
gttacttataaaaaaatgtgtgtacttctttgttttgttcttttagaCTG
TTGTAAGATTCATATgtttagtcatttcttgtaattggaatttttgttaa
aagtgtagTGAATAGAATCTACTCTAACCCATAATACATATGATTTACTC
TTTTAGAGCCAAATATTTTCTGCTGCCTAATAAACAGCCACCCCCGTTTg
taaattttcctatttttctccTGACTTGGTTTAGtctaaaattaatttat
ttggtCCCAAATTAGGTACCGCCCCCTCCCCGTTTACAAAGATTTGAGGA
cttttccaaaccccccgttTAATTTGGGCACCTGACAATATTCAATTTAA
AGATTATTGAATATAAGGTATTACTCTAGATGTGATGATAAAAGTTGGAT
ACCGGGTGACGGTGTGACGGTGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_60:1349202..1357546-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071427 ID=TCONS_00071427|Name=TCONS_00071427|organism=Clytia hemisphaerica|type=transcript|length=8345bp|location=Sequence derived from alignment at scaffold_60:1349202..1357546- (Clytia hemisphaerica)
CAAAAAGCTGATGTATAAAATGGCCGAGCTTGGCTGGTCTAGCCAGAATC
AAAGAAAAAAGTATCAGATAGTGCCAAAAGATTTGTAAGGAAAATGAAGA
TCGTTTGTTTGTGTGTCCTTGCTTTCGGTAAGTGAAAAATTTTTTTTTCT
AGAATATACCTTATTTAGATTTTTTCACACGGACGCGAATTGAGAATCTG
AAATTTTTTTACGATTCAATCTTTTTTTTACCCAATTTCTTTCATTTTCG
TAGGGTTTTTGGCCAAAATTTGGATTTTAAATTTTTCACGAGGACTAATT
TTCGCAAAAAAGGCCGAAATTCATTAAAATTGCGAAAATTAATTCAAGAG
AAATCTACCCCTCATAAGGTACTTACAGCCTCTACAACAAAGGAAAGCTA
ACATTAAAGAAAACAGGGACATAATCTTTTAAACCTGTTCAACTAACAGT
GCCGTAGGAAGCATTTTCATATTGAGGGGGCTGAAGTTTAGTGACACCGC
GAGGGCCAACCATGGTTTGGCCCGAGAGGGGAAATTTTGAAAATTTGAGC
TCTAGATTGCTTGAAAATGCACCCAATTGTGACAATTATGACAAATTAAA
AAAGAAAAACTTTGCATTTAGCAAAATAACCATTTTTGAAAAAATTATTG
GGGGGGCATAGCCCCCCCTTGCCCCCCCAGTTGCTACGGCACTGACTAAT
CACTAAATACTTTTGTAAAAAGCTAAGGTCAATGGAAAATGATCCTTTCC
AGCATCTACTCATTTTGATTTTTCTTCTTTCCCTTCTTTTTCAGCAGCAT
TTGCAAATGGACGACCAGACGGCAACAGCCATGCTGATATCCTGACTATC
AACCAAAAGATGTTTGAAAAGGCGGAAAAGGGTGGGTATAAATCCTATTT
CTTTCTTCTTTTTTTATACACTAAAGTCTTCTCTAACTCGAATGTTTCCG
TAATTAAAACAAGTTTTCTCGTCCCTTCATTTAACAATACCTTTATGAAC
CTTACACCATAACTTAAAATTTCCTTAACTCGGATAATTTTTTTGTTCAA
GCTATGGAAACTCAACTGTGTTACCATCAAGGATCATCATATAGTGTCAA
TAGCTCAACAAACCCAACCTGCTCTAATCAAAAGACCAGTTTGTCAGACT
TTAGAAAACGAAGGTTCAGTTTTATTGCCATACTTTTAGCAAAGAAAGAG
CATTAGAATTATCAGTATTAAAAATTATCAAAATCATTTTCTTTTTTTTT
CTTACAGCTGTTTCAGGATTTTCAAGCAACTCTAACATCAAAGGTATGAT
TTAGGTACAATTTAAAGTAAGCCTTAGTCTCTTGGCGGTGTAGCCTGTAT
CGCTATAGTGTCATCGCTGCCCGCTTTTCTTTCGTTAAAATTATACATTC
AACTTAAATGGAATATTGAGAAATCTTTTCACTTACCAGACTACCATCAT
AAGTCAGATACACGTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAG
GCTCAGAATGCCTAAAAATTGGGGACAAGCTGGAGTTTTTACAAGCTCTT
ATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTATTGCTTTT
TCTAAAGAACGCGTCATCTCTATCACTTCAAATGACCAATTAGTGAAGTA
TCTTTTAAAAACTCCAGCTCATCCCAAAAATTGAGAAACATGCAGAGGCC
CTAAATGACGTCATCAAAAGAGTAATAAATTTTTTGCTTGACTGAAATCA
ATTTGTCATTTACCCAAAAAAATCCTTCTCAAACTTCAGATATTGTATTT
TTCAGATTTTGATGACGTCATCGGACCCAAAATGCCCCGATTTGAACATA
TTTATTTTCGAAAGTCTGATTAAACTCACTATTAACCCTTCCAACTTATT
CTCAATCAATTTTCCGATCCAATGAGGGGTCAACCATCTCCTAACTCCTT
CCAAATCTCGAGATATTGCATTTTTCCTGTTTTGATGACGTCATCAACTG
AAAACGCCTAAAAATTCAGCCAAATTTAAAAGTCACACTCAAGCCTCATA
ACCTCTCCCATCTTATTTTCCATAAATGCCGTCACATGTAAAAAACATTT
AACGCTGCTCAAAAGGCCGATTTCTTAAGAAACAATGAGGCTGCTTGGGA
AAACTAGTGTAATTGCCCGCAATTCTTTTCATTTGTGATTTAACTTTTCT
TCTAGAACGAGACATGCTTGAAGGAGACATCGTCTTGACACCGAAATTGA
GGACATATTTGGACAACCAGAGAAGTGGAGCACAAATCAGTCCTTTTGAT
GCTGCTGTCCGAAGCAAATGGCCCAACGCACGTATTCCGTTCACATATAA
TCGATTGTGTAAGTTACCTTAAGTACCGCTAACTTATCGCTGTGGTATAG
TGGTCATTGACCTTGGTTACTGCACAGGCGACTGAGGTTCGATTCTCGAT
TCCCACTCGCAGTGGTTCACTTGGCAAGTGAATGAACCTTTGCCCGGGTC
AACCTATGCCATGTGAGTTGAATTGGGTAGTCAGTCCAAGGTACTGACGG
GGCGCTCATTGAAAGGGTCTATAGTTGCGAAAATAGGCCCAAAGCCTGCT
GCAACTTAACCAAATAAAAATAGGAAAATAAATCTGATCAATGTTTCATA
GAACCCGCAAGCAACATCCCTCAAAAATTATTTGCCTGTGATAATGTGTA
AAAGTAAAGACTGGGCATAAGCGAAATGGACCTCTCGTGTCAAATGACTC
AGGTCTTTCGTATCGTTCTTTAGATCGAAAGTGATAACCCTTCAAAGTAG
TGATTTGCGTATATATCAGTTCATTAATGGTGATAAATTTTCGGATGGCT
TTTTGGAAAATCAAGGTAGACCATGGGAGCTCCTCAAGCGGTTTTCGTGA
TGGCGTGATAGGGACCTTTTTATTTGCGTGACTACGTGATTTGTAAATTT
TTTCTTCGGGATTGCATGACCAGAGGTCAAAACGTGATCGTGATTTGAAA
GATTTTTTTGAGCTGTGATGCGTGATTATCCAATTTTTTTGCTGAATTTC
GTGATCGTGATTGAAGACAAAAAAATGCAAGATATCAGAATTACCACTGG
GGGGGGGGGCTCGTTATGTGTTTTGAAAGGTCTTACTCACTTTTTTATTC
GTCTTCTTATTCTTCACAGCTTCTGACTACAGAAAAGCAGTAAATGAGGC
AATCGCAGAATATAACCAAAAAACATGCATCCGTTTTGTTCCAAAAACAT
CAAGGGACAAGAGTTGGATCGAGTTCATGCATGGAGGAGGGTTGGTATCT
TCTATTGTGTCCTCTTAATCATAATTAGCCTGTAGCCCCAACTATGACTG
CCCCGTAGAGCTTATGTGGCCCAGAAGAACTCTGCCTTGATTTCTCAGCT
TTTTTTAAATTAAAGTTTCTCTGCAAGTCGGATGGTTAGTTTTGGCAAAT
TTTTTCAGTGATACTGAAACCATCAATTAAACACTTCGATTCGTTAAGTA
AAACCAGCTAATAGCTCCTGCGGGGCAATAAATACCTCCTTCAATAAGGA
TAAGGACTAAAGTCTGTCTCTGTAAAGTATTATCGGCAAAGGAAACAAAA
AAAAGCTGTAATCTTTTGATAGAGTTCGACTTAGATAGCGATTTTGTGCT
CGTCATTTTTTTTCTCCAATTGTTGTGATTTTTTCTATTTGATAGTATTC
CACCCCTGATTATCTTTTCAATTCAAATTCTATCAAAAGTTAGCCTTAAT
ATTCAGACAGACTTTAGCTAATACCTACAAAACTCTTTGTGGCCAAGTTT
TTGTCAAATTAAGATCCACTAGTAATCATCTAACAGGCCTAGGACCTTTA
ATGGTTTTAAAGGAATTTAGAAAGAGTTTAATCGTATTTTTAACCTGCAT
TTATACTGAATAAACTGAATTTGGAGAGATCTTTGGTAAATTATGTTGTC
TCAATTATCACGAGATAAACTTCTATGGTTTATTAACTTGGATAATTGAG
GTTTATATGGTTATTAACCATATTTCATTGCGCATTGGTTTCATATTTTC
TACTTTGGACTTTTAGATGCTACTCAATGATTGGTCGTGTCGGAGGAAAA
CAACAAATTTCATTGGGTAACGGATGTGGAAGCAAAGGTGTCGCCATTCA
TGAAATGATGCATGCTTTAGGTTTGTATATTTTCATCTAAAATTCAAAAT
TTAAAAGTTCTTGTATCTTACAACTGCCGCAAAAAACATCCTTAAATCAT
CTAATCTAGCATGCTAGACGGCTAAATTTTGACAATTTTAGTAAAAGGAA
CTGAAGGGAATAAATTTACGAGCTAATATTATCTAACCAATTATCATGTT
ATCACATAGCAATTATATTACTGTTTAACGTGTATTATGTTAACAGTTTC
AACCCATGAATGAGGCCCCCAGTCACCTTTCAATTCACGCAATCACGCAA
AATAAATTTTCAAATCACGTTATCACGAGTAAAATTTCCTCTCTATCACG
AATGACGCAATCACGCACTCTAAAATCTTAAATCACGAAGCACGAACTTG
AAAAACGCCTATCACGCCATCACGAAAACCACTGGGGGGTCCTCATGAAC
CATTACAGAATACCATGTAATCTTTTTCAGGATTTTTCCATGAACAATCA
AGGAGAGATCGCGATGAATATGTTTCCATCCAATGGCAATACATTCCTGG
AAGTAAGTATCTCTTTCTCTCAGTTTTATTTTGCTTGTGAATACCCCCTT
CTCAAAAACCCGGTAGGATTTTTTCAGCCAGTAGGGATACAAATAACGGA
TTGAAACTCGATGAGAATTGATATTCCTGTATTTTTTATGACTGGGGATT
TCAATTCTTTTGTTTTCAAGTCAGAAAATTCAGCGGAGAGGGAAAAATGG
CATAATACTTTGTTGTGAGGTTGGTTTTGTCTGATTATTTTCAGTGGGGA
CAAATATTGGAGGATAATTTTCCACCGGTGACGATATTTTGGCCAAATTT
TTCAGTGGGAAGGGGTCTCAGTGGGTCTGTGAGAAGGAGGTGTTTATGAC
TATTTTTTTCTTGTAAATAAGATGTTTTATATTTGGGTCTAGAACTAAAA
CCTGAAGCTACATTAAAAGTTTTTAATTTGGTTTGGTTCTTTAGAAGCTG
TAACTTTTGAATAGGCAAATAACCTGTAATAACCTGTAACCTTTTTCTAG
ATATCAGATATAACTTTGAGAAGTACAGACATGGACAAGCAGACACACTG
GGTGCACCTTATGACAAAAAGTCCATCATGCACTATTCAAAGTATGTATG
GCTTCTGTTATGATTTGTCTATGAAAAAATCTTGAACATTTTTACAATAG
GCTCTCTATACACTTTGAATAATCTTTCCGAAAAATTCTCTCGCTGGAAT
TTTAAGTTACTAAAATTTTATCCTGGTGGTTTGTTAAATACTGGTCAATA
GTGTGTCAAAGTATCTTATCGCCTAAACATTACTTTTTTTGACAGCAAAG
CTTTCTCAATCAACGGTAAGCCAACCATTGTTTCACGAAGTGACCGAAAT
GAGATCCTTGGTCAAAGAGACGGATTGAGTGTAATCGATATCAAGCAATT
AAGAAAGTTATACCAATGTAAAGGTGAAGAAAAAGTCGTCATTACTGAAG
GTAAAAAGAGTAACCTTGAATACTGAACGTTAATTTTTATCACACCTCTC
TTAGAGATCGGAGTTTTAGCTTTTTGCGTCACTTACTGTATCCTTTAAGT
CTGAAACTTGAAACTTGTCCTGGAATACGATAATTAGCTACAATGCCAGA
CGTAGATGTTTTAGAATCACTGGAAATTGCTTCAAAAACAATGAAACTGC
CTCCAGTTGCAATGTTTCAGATCGGAAGACTTTCCGCTGTCCTGTCAACA
CTGGAACTGGGAAGAAGCTCAAATTTGACTCTTGTCTCACCGTTTAAGTC
CATGATTCACTGGCGGATTTAAGACAATAGCGAGTTTATGTATGTGTGTT
TTTCAGCGACGGAGACGGTAAGGTTCTAATTTGAGTAGATCCTGACCAGC
TGAGGACGACGGTAAATCAGCACTTTTTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT
TTACCGTCCTCGATTTTGCGGGGCGGAATTGCGGGTTTTTCCAAATCGCT
TCAGTCACTCTACCGTCCTCAAAAGTGCAAATACATAAACTCGGTAATAG
AGCAAGTACGTCGGAAACATGCGAAGGAGTGCAACGCTCGTTAAAAGACA
ATGAAATTACAATTATAAATCTTTTCTTCTGATAAGTTCGACATGGTCTA
AAACCGCCTATGGGATTGTAGATCAAAGGGCTCATTCTTCAATAGCTATC
TAGCACAAACCTTGATTACTGAGAACTAACCAAGTTATCAAGTACCATCT
TTAACCTACCCTGAGTATCAGAGGTTTTTCAAAGAATATATTAACCTCTG
AAGACCAATAATATAAATTTTATCGCGCATGTGTCAATCTAATCACTTTA
GAAAAAATCAAAGATGAAGAGCAAATNNNNTATTAATGTCTAGCAGACTG
TATCAGTATGCAGTTTACTATTTACGAATCCCCCAGAAACCTCCAAGTGT
AATTGAAATGAGTTTCTTTCGAAAGAAATCTTTTACATGATTCCCAAATG
TATAATAAGCAGATATTCAATAGGTAAAAGTTGGTTATTGAGATTTATTA
ACCCGAGGTGATGAATATTCATCACCGAGGGTTGATAAATCCAATAACCA
ACGTAACAATAATGTCATTACTGCGGACAAGGCTAGAACATGAGAAATCG
ATGAAAAACCAGCTCATTGTGTATCCAGAGTTCTATGATAAATCCATGCT
ATCACTGACTCTTTTTAAAAAGCATTGATGACATTTGTGAGTTGTGTTTT
CAACGACGGGAATAAAAATATCAACTTTGAACTTCATCCAAGATTTTGGA
TGGTCGTCATGGTTACTTTTGTCTACGTTGATTGCGCGCTGAATAGAATC
TCGATTCGTCTGCACAGCGTCAATATATGGTTTTGACCTGTGCTTTTCAC
GGTATCTTTAACCCTCTTGTGATAAGGCCAGCCTCAGAACCGAAACTCAA
GGCCTTCCACGCTGTAGAGGAATGCCTATATATCTAGACTGAACTTCGTA
CCTAGAGCCACTTTTTTATCTATCGATGGACGTTGGGGAGCGCTATCACA
ACCATAAAAAGAAGGGGGGAATGGGTTTTAAATTGCTAAGTGACTCAAGT
CGTTGATGATGTAACAGTTGATTTTAGTTCATGATTTCAAAAACTACTTT
TCTCTTTCTATAGAATGTAAAGACAAACATGAACTTTGTCCAACTCTGGC
TAAAGAACGATTATGCACTGTCACTGTTAGTGATTGGGTTAAAGACAATT
GTCAAAAATCTTGCGATACATGCCCAACACCTGCACCACAGAAACCCTCG
TGTGTACCAAATGAGAGAGCAAAGCATTGTGGTCAATGGAAAAGACAAGG
ATATTGTGACCCAACCAGCAAATACTCGAGCTGGATGGGTAAAAATTGTA
AGGCCTGTGGGAAGTGCATTTGATGCGTTTTCGATGTGATCAATTTATAT
CGTTGATACTGTGAAATATTCTGTCAAATGTTTTTACACATTTTTTTATA
TGTAACTCCAACTCGGGTCAGGGCTGGGGCTATTTAGCATTCTTGCTCAT
ATCCTGAAAAATTGGCTTTGATCACTCCTGATATTATACCTTAGATTATT
TGAAAAGCTTTTACTTTACGAGATAGTGAAAAAGATTGGCTAATTTCAGT
GCTCTAGCCTCAGCAACCTAGTTACTTATAAAAAAATGTGTGTACTTCTT
TGTTTTGTTCTTTTAGACTGTTGTAAGATTCATATGTTTAGTCATTTCTT
GTAATTGGAATTTTTGTTAAAAGTGTAGTGAATAGAATCTACTCTAACCC
ATAATACATATGATTTACTCTTTTAGAGCCAAATATTTTCTGCTGCCTAA
TAAACAGCCACCCCCGTTTGTAAATTTTCCTATTTTTCTCCTGACTTGGT
TTAGTCTAAAATTAATTTATTTGGTCCCAAATTAGGTACCGCCCCCTCCC
CGTTTACAAAGATTTGAGGACTTTTCCAAACCCCCCGTTTAATTTGGGCA
CCTGACAATATTCAATTTAAAGATTATTGAATATAAGGTATTACTCTAGA
TGTGATGATAAAAGTTGGATACCGGGTGACGGTGTGACGGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044369XLOC_044369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071427-exon-scaffold_60-1575043694:1357420..1357546TCONS_00071427-exon-scaffold_60-1575043694:1357420..1357546Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1356666..1356749TCONS_00071427-exon-scaffold_60-1575043694:1356666..1356749Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1356254..1356289TCONS_00071427-exon-scaffold_60-1575043694:1356254..1356289Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1355189..1355341TCONS_00071427-exon-scaffold_60-1575043694:1355189..1355341Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1354257..1354377TCONS_00071427-exon-scaffold_60-1575043694:1354257..1354377Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1353377..1353480TCONS_00071427-exon-scaffold_60-1575043694:1353377..1353480Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1352845..1352916TCONS_00071427-exon-scaffold_60-1575043694:1352845..1352916Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1352256..1352346TCONS_00071427-exon-scaffold_60-1575043694:1352256..1352346Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1351897..1352051TCONS_00071427-exon-scaffold_60-1575043694:1351897..1352051Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1575043694:1349202..1350133TCONS_00071427-exon-scaffold_60-1575043694:1349202..1350133Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1357420..1357546TCONS_00071427-exon-scaffold_60-1510915933:1357420..1357546Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1356666..1356749TCONS_00071427-exon-scaffold_60-1510915933:1356666..1356749Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1356254..1356289TCONS_00071427-exon-scaffold_60-1510915933:1356254..1356289Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1355189..1355341TCONS_00071427-exon-scaffold_60-1510915933:1355189..1355341Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1354257..1354377TCONS_00071427-exon-scaffold_60-1510915933:1354257..1354377Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1353377..1353480TCONS_00071427-exon-scaffold_60-1510915933:1353377..1353480Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1352845..1352916TCONS_00071427-exon-scaffold_60-1510915933:1352845..1352916Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1352256..1352346TCONS_00071427-exon-scaffold_60-1510915933:1352256..1352346Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1351897..1352051TCONS_00071427-exon-scaffold_60-1510915933:1351897..1352051Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1510915933:1349202..1350133TCONS_00071427-exon-scaffold_60-1510915933:1349202..1350133Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1357420..1357546TCONS_00071427-exon-scaffold_60-1491911889:1357420..1357546Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1356666..1356749TCONS_00071427-exon-scaffold_60-1491911889:1356666..1356749Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1356254..1356289TCONS_00071427-exon-scaffold_60-1491911889:1356254..1356289Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1355189..1355341TCONS_00071427-exon-scaffold_60-1491911889:1355189..1355341Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1354257..1354377TCONS_00071427-exon-scaffold_60-1491911889:1354257..1354377Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1353377..1353480TCONS_00071427-exon-scaffold_60-1491911889:1353377..1353480Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1352845..1352916TCONS_00071427-exon-scaffold_60-1491911889:1352845..1352916Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1352256..1352346TCONS_00071427-exon-scaffold_60-1491911889:1352256..1352346Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1351897..1352051TCONS_00071427-exon-scaffold_60-1491911889:1351897..1352051Clytia hemisphaericaexon
TCONS_00071427-exon-scaffold_60-1491911889:1349202..1350133TCONS_00071427-exon-scaffold_60-1491911889:1349202..1350133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1349202..1357546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0418607	0.0742482	0.0475531	0.438564	0.359373	0.502903	0.412775	9.42846e-07	0.853474	0	0	0.000486162	3.99093e-05	0.0206615	0	0.0141712	0.340218	0.0169833	0.186734	14.1615	10.259	2.40817e-05	5.32987	4.61043	4.51393
Blast
[Close]
BLAST of TCONS_00071427 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.206e-37
Identity = 91/256 (35.55%), Postives = 133/256 (51.95%), Query Frame = 1 
Query:  166 DILTINQKMFEKAEKAVSGFSSNSNIKERDMLEGDIV-LTPKLRTYL---DNQRSGAQISPFDAAVRSKWPNARIPFTY-NRLSSDYRKAVNEAIAEYNQKTCIRFVPKTSRDKSWIEFMHGGGCYSMIG-RVGGKQQISLGNGCGSKGVAIHEMMHALGFFHEQSRRDRDEYVSIQWQYIPGNIRYNFEKYRHGQADTLGAPYDKKSIMHYSNKAFSINGKPTIVSR-SDRNEILGQRDGLSVIDIKQLRKLYQC 912
            D+  ++  +F  A   +SG ++  N      ++ DI  +   L   L   D +   AQI       + +WP+  IP+   + L  + +  +  A   Y  KTCI F P    + ++I    G GC+S +G R  GKQ++S+G  C       HE +HALGF+HEQSR DRD+YV I W  I     +NF  Y    +D+L  PYD  S+MHYS  AF    +PTIV+R SD  +++GQR   S  D+ +L +LY C
Sbjct:    2 DLWNLSWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGLGLDLFEGDIRLDRAQIRNSIIGEKYRWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAG-ETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNC 255
The following BLAST results are available for this feature:
BLAST of TCONS_00071427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B1.206e-3735.55Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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