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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071385 ID=TCONS_00071385|Name=TCONS_00071385|organism=Clytia hemisphaerica|type=transcript|length=2358bp
GTACCCTAGTGTAAAAGTCTACGAAGTCAAGCTCGAAATGTATTTAAAAT
CTAAAGAATATTGACAAAATGTGTATCTTTTTGGAGATGGTGTTTAGAAT
ATGACAGAAGGAAATTCtcacaagaaaacaaagaagaagCTAAAGGAGAA
GATGCCATTAAAAGCGAAGAAACTTTTGGTGTTGAAAAGACCCTTGAAGA
ACATCATTCGCAAAAAACAATGTCGTCATCACAATACCATCTTCAAAGTG
GtatttGTAGTCCTCGTATTGTACGTGCTCGTCAATTTAGCGGATTGGAA
AGAGCATTGGGATTCAAAAAAGCAAGATATTCTGATTCAACAACAAAAGA
TGGATCCCGTGGCTGAACAACTCACTGATGCCATGGATATCCAAGAATGG
GCAAAACCAATGCAGTGTAAAGCTGGTAAACGAAAAAGACTAGCCTTCTT
GAAAACTCACAAAACCGGTGGTGGTACATTAACCGGGATATTAAACCGGT
TTACAGATTATCAACAGATTGACATTGCGATACCAAAAAATGACGTTCGG
TTTAATTGGCCTGCATCGTTCAGCCACCAAGAAGTACAGGTCTCTCGACT
CAAGGACCGCAGAGCTGACATGTTGAATTTACATTCAGTTCTCAATCGAC
CAGAGCTGGGAAAAATCATGAAACCAGGTTTCAAATTAGTCACCATATTA
AGAGAACCTGTACGTCAATTTTATTCCatgttttattatttgaatttacC
AAAGCAttatgggatagcaaatgaaaGTGATCCGGTTTCCACCTTCATGG
AGAACCCATATCGGTACCATCATTTTAAACCGTTTTTGAAGGTCGGTCGA
GAGCGTTATTTTGAAGAGAATCTAATTCATAATGGAAATTTGTACGATTT
AGACTTCACGAGGTTCCAAGAGAAAGGAAAGGATAGAGGGTTAAGAGATT
TTATTCAATATCTTGAGAAGGCGTTTCATTTGGTTATGATCACTGAGAAA
TATGATGAAAGTTTATTACTGTTGAAGAAGCTCATGTGTTGGGACTTCAT
GGATATAGTCTACATGAAGAAACACGTCAACCATAACCTGCAGAATGAAT
CATTTGCCATTTCAAACGCGACGGCCGAAAGTATACGCGGCTGGAATTAC
TTCGACGCGGTCCTGTATAATCATTTCTCGAAACGATTAGATGAAATTAT
CGGGAAACAAGATAAAGAAAAGTTCAAAACAGATTTGATGTTGTTTCGCG
AACTTAATGACGCTGTCGTGACATTTTGCTTAAACAACAGCACATCGACA
GATGTGGATGGCACTatccaaaaatttgacaaaatattagAAGTCTTAAA
AGACATCGGTGAAACACCTCCACCAGCGTTCCTTGAAAAACCGGATTGTT
TTTGCACTAAAATGAAACGAAACGAGAGAGACTACATGTTCTTTTTCGCA
AAACGTTTCCCACCGTTTTACTTTATGAAAGGATTGAGTCGTCCCCAGTC
CACGGACGATTGCTAATCATATATTGATTAAAATCGAGAGCATTTTCTta
tcaaatctgcaaaaatgatgaattttgTTGGATACTTTTTGATTGAGTAT
GTGGTTCATTGGtgtttataaaaacataaatttgACCTAAATGTTCAAGA
CATCAGGAATGTATTATGTATTTTTCATGTGTGAAATTATAgccttttaa
aattttgctttcgTGTAAGCTCCCAGATAAGTTATTGGAAGTACAATACT
GGTAAGAGAGTTAGACCTGTTGAAACCATTCCCAGAAACGATATAATAAA
AACGATTGGATAACTTACTGTGAGACAAGAGAAGGGATTTCTTGAGATCC
GTCGTTGGCACTGAACACTGCATGTTTAAtggttttctaaaaaagtgaaa
aaaagaaataacaatACATTTGTCAACTTCCTTAAAAGGgatgaagtcat
tgcattatATATTGTATAATACTGAATGTGATTGGTTCTGAGTTCAACAG
GGCAAGTGACGTAAAATATCGGTATCTGTGATTATGTCAAAGGAACGACT
TCAGACATTTGACGTCATGTTCAACCACTTTGAACTCGAACCCAATCTCC
TTTCATGAAGTTTTTAGCAAATGGACTGCTAGCTGTATCATTTTGGTACT
ATCATGTCTTAATTCTGGATTTTGTAAACACTTATTAATTTGAATCATct
acacaaaaataaaaagccGATACCGACTGAGCAATTTCTGGCGTTGTTAC
GCAAGATAAATATGTCATCTTTCTCTGGTAATTTCAAACGACGCTGAAGT
TTGAACAAgccttttgtcaattttcgaaTTCAAAcagaatattttttgtt
caattttc Run BLAST on NCBI protein sequence of TCONS_00071385-protein >TCONS_00071385-protein ID=TCONS_00071385-protein|Name=TCONS_00071385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MTEGNSHKKTKKKLKEKMPLKAKKLLVLKRPLKNIIRKKQCRHHNTIFKV
VFVVLVLYVLVNLADWKEHWDSKKQDILIQQQKMDPVAEQLTDAMDIQEW
AKPMQCKAGKRKRLAFLKTHKTGGGTLTGILNRFTDYQQIDIAIPKNDVR
FNWPASFSHQEVQVSRLKDRRADMLNLHSVLNRPELGKIMKPGFKLVTIL
REPVRQFYSMFYYLNLPKHYGIANESDPVSTFMENPYRYHHFKPFLKVGR
ERYFEENLIHNGNLYDLDFTRFQEKGKDRGLRDFIQYLEKAFHLVMITEK
YDESLLLLKKLMCWDFMDIVYMKKHVNHNLQNESFAISNATAESIRGWNY
FDAVLYNHFSKRLDEIIGKQDKEKFKTDLMLFRELNDAVVTFCLNNSTST
DVDGTIQKFDKILEVLKDIGETPPPAFLEKPDCFCTKMKRNERDYMFFFA
KRFPPFYFMKGLSRPQSTDDC Run BLAST on NCBI transcript from alignment at scaffold_60:1097060..1100265- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071385 ID=TCONS_00071385|Name=TCONS_00071385|organism=Clytia hemisphaerica|type=transcript|length=3206bp|location=Sequence derived from alignment at scaffold_60:1097060..1100265- (Clytia hemisphaerica)
GTACCCTAGTGTAAAAGTCTACGAAGTCAAGCTCGAAATGTATTTAAAAT
CTAAAGAATATTGACAAAATGTGTATCTTTTTGGAGATGGTGTTTAGAAT
ATGACAGAAGGAAATTCTCACAAGAAAACAAAGAAGAAGCTAAAGGAGAA
GATGCCATTAAAAGCGAAGAAACTTTTGGTGTTGAAAAGACCCTTGAAGA
ACATCATTCGCAAAAAACAATGTCGTCATCACAATACCATCTTCAAAGTG
GGTACGTGCGTGTGAAACTACCATTACGTCATGGGTAGCTACGATCGTAG
GTACCTTGTAGTAGTACCAAGTCCAAACAGTGAATGGCGTTGGGTAACTC
TGACGAAATTAAAGATAGGCACATTTTTTGAACCAGCCGATAGACAGTAA
TGTCAGTAAGGTTTCCACTGAATTCTGGTCCATTATAGACAAAACCTAAA
TATATCCAAGTCTTTCTTTAGCTGACAGTATGATAATCCCTTTCTGATCT
AAGACCTACCGTTTTTTATTTTAGTATTTGTAGTCCTCGTATTGTACGTG
CTCGTCAATTTAGCGGATTGGAAAGAGCATTGGGATTCAAAAAAGCAAGA
TATTCTGATTCAACAACAAAAGATGGATCCCGTGGCTGAACAACTCACTG
ATGCCATGGATATCCAAGAATGGTACGTTTTCACACCACAGATATCACAA
TATTCCCTTACACAATAGATAGGCTACTTGCTTGCAACATCCCCGTCAAA
GTGCATTCAGTTGAAGATTTCTTTTTAAAGTCTGATTTTCATCAATCTTA
TAATAAAAGATGAAATTTTGTCCAAGATTCATCCAGAGTGACATTGCGCA
GTCAGGGACAACTGCAAATTAGCTTATCATCTCGGAATATCAGCTATTTA
GCTTAGAATGAGCAAATTAGCCCAGATTATAATATGGGAAAAATTAACCG
ATAATAAAGAAAAAATTGATTTCTGAGCGAAATAACAATAGTTAATTTGC
AGTTGTTCCTGACTGTTAAGCGTTTAGAGTGATGTTTAAATGAGACAATC
TAATTGGCTGTCTAGAACATCATTATTAAAGTGTTTCTTCTTTTTCACAG
AATATTATTGCAAAATTGTAAAATTTTGTTGTCCCAATTTCACTTTTATT
TCAAACAAACGTGGAAGCAGGGACAATTTTTTGAACAGATAACTAAATGT
TTCATTCCAACAATAACCATATTAATAACCATCAATCATGTTTATAGGGC
AAAACCAATGCAGTGTAAAGCTGGTAAACGAAAAAGACTAGCCTTCTTGA
AAACTCACAAAACCGGTGGTGGTACATTAACCGGGATATTAAACCGGTTT
ACAGATTATCAACAGATTGACATTGCGATACCAAAAAATGACGTTCGGTT
TAATTGGCCTGCATCGTTCAGCCACCAAGAAGTACAGGTCTCTCGACTCA
AGGACCGCAGAGCTGACATGTTGAATTTACATTCAGTTCTCAATCGACCA
GAGCTGGGAAAAATCATGAAACCAGGTTTCAAATTAGTCACCATATTAAG
AGAACCTGTACGTCAATTTTATTCCATGTTTTATTATTTGAATTTACCAA
AGCATTATGGGATAGCAAATGAAAGTGATCCGGTTTCCACCTTCATGGAG
AACCCATATCGGTACCATCATTTTAAACCGTTTTTGAAGGTCGGTCGAGA
GCGTTATTTTGAAGAGAATCTAATTCATAATGGAAATTTGTACGATTTAG
ACTTCACGAGGTTCCAAGAGAAAGGAAAGGATAGAGGGTTAAGAGATTTT
ATTCAATATCTTGAGAAGGCGTTTCATTTGGTTATGATCACTGAGAAATA
TGATGAAAGTTTATTACTGTTGAAGAAGCTCATGTGTTGGGACTTCATGG
ATATAGTCTACATGAAGAAACACGTCAACCATAACCTGCAGAATGAATCA
TTTGCCATTTCAAACGCGACGGCCGAAAGTATACGCGGCTGGAATTACTT
CGACGCGGTCCTGTATAATCATTTCTCGAAACGATTAGATGAAATTATCG
GGAAACAAGATAAAGAAAAGTTCAAAACAGATTTGATGTTGTTTCGCGAA
CTTAATGACGCTGTCGTGACATTTTGCTTAAACAACAGCACATCGACAGA
TGTGGATGGCACTATCCAAAAATTTGACAAAATATTAGAAGTCTTAAAAG
ACATCGGTGAAACACCTCCACCAGCGTTCCTTGAAAAACCGGATTGTTTT
TGCACTAAAATGAAACGAAACGAGAGAGACTACATGTTCTTTTTCGCAAA
ACGTTTCCCACCGTTTTACTTTATGAAAGGATTGAGTCGTCCCCAGTCCA
CGGACGATTGCTAATCATATATTGATTAAAATCGAGAGCATTTTCTTATC
AAATCTGCAAAAATGATGAATTTTGTTGGATACTTTTTGATTGAGTATGT
GGTTCATTGGTGTTTATAAAAACATAAATTTGACCTAAATGTTCAAGACA
TCAGGAATGTATTATGTATTTTTCATGTGTGAAATTATAGCCTTTTAAAA
TTTTGCTTTCGTGTAAGCTCCCAGATAAGTTATTGGAAGTACAATACTGG
TAAGAGAGTTAGACCTGTTGAAACCATTCCCAGAAACGATATAATAAAAA
CGATTGGATAACTTACTGTGAGACAAGAGAAGGGATTTCTTGAGATCCGT
CGTTGGCACTGAACACTGCATGTTTAATGGTTTTCTAAAAAAGTGAAAAA
AAGAAATAACAATACATTTGTCAACTTCCTTAAAAGGGATGAAGTCATTG
CATTATATATTGTATAATACTGAATGTGATTGGTTCTGAGTTCAACAGGG
CAAGTGACGTAAAATATCGGTATCTGTGATTATGTCAAAGGAACGACTTC
AGACATTTGACGTCATGTTCAACCACTTTGAACTCGAACCCAATCTCCTT
TCATGAAGTTTTTAGCAAATGGACTGCTAGCTGTATCATTTTGGTACTAT
CATGTCTTAATTCTGGATTTTGTAAACACTTATTAATTTGAATCATCTAC
ACAAAAATAAAAAGCCGATACCGACTGAGCAATTTCTGGCGTTGTTACGC
AAGATAAATATGTCATCTTTCTCTGGTAATTTCAAACGACGCTGAAGTTT
GAACAAGCCTTTTGTCAATTTTCGAATTCAAACAGAATATTTTTTGTTCA
ATTTTC Coding sequence (CDS) from alignment at scaffold_60:1097060..1100265- >TCONS_00071385 ID=TCONS_00071385|Name=TCONS_00071385|organism=Clytia hemisphaerica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_60:1097060..1100265- (Clytia hemisphaerica)
GGCAAAACCAATGCAGTGTAAAGCTGGTAAACGAAAAAGACTAGCCTTCT
TGAAAACTCACAAAACCGGTGGTGGTACATTAACCGGGATATTAAACCGG
TTTACAGATTATCAACAGATTGACATTGCGATACCAAAAAATGACGTTCG
GTTTAATTGGCCTGCATCGTTCAGCCACCAAGAAGTACAGGTCTCTCGAC
TCAAGGACCGCAGAGCTGACATGTTGAATTTACATTCAGTTCTCAATCGA
CCAGAGCTGGGAAAAATCATGAAACCAGGTTTCAAATTAGTCACCATATT
AAGAGAACCTGTACGTCAATTTTATTCCATGTTTTATTATTTGAATTTAC
CAAAGCATTATGGGATAGCAAATGAAAGTGATCCGGTTTCCACCTTCATG
GAGAACCCATATCGGTACCATCATTTTAAACCGTTTTTGAAGGTCGGTCG
AGAGCGTTATTTTGAAGAGAATCTAATTCATAATGGAAATTTGTACGATT
TAGACTTCACGAGGTTCCAAGAGAAAGGAAAGGATAGAGGGTTAAGAGAT
TTTATTCAATATCTTGAGAAGGCGTTTCATTTGGTTATGATCACTGAGAA
ATATGATGAAAGTTTATTACTGTTGAAGAAGCTCATGTGTTGGGACTTCA
TGGATATAGTCTACATGAAGAAACACGTCAACCATAACCTGCAGAATGAA
TCATTTGCCATTTCAAACGCGACGGCCGAAAGTATACGCGGCTGGAATTA
CTTCGACGCGGTCCTGTATAATCATTTCTCGAAACGATTAGATGAAATTA
TCGGGAAACAAGATAAAGAAAAGTTCAAAACAGATTTGATGTTGTTTCGC
GAACTTAATGACGCTGTCGTGACATTTTGCTTAAACAACAGCACATCGAC
AGATGTGGATGGCACTATCCAAAAATTTGACAAAATATTAGAAGTCTTAA
AAGACATCGGTGAAACACCTCCACCAGCGTTCCTTGAAAAACCGGATTGT
TTTTGCACTAAAATGAAACGAAACGAGAGAGACTACATGTTCTTTTTCGC
AAAACGTTTCCCACCGTTTTACTTTATGAAAGGATTGAGTCGTCCCCAGT
CCACGGACGATTGCTAATATTTGTAGTCCTCGTATTGTACGTGCTCGTCA
ATTTAGCGGATTGGAAAGAGCATTGGGATTCAAAAAAGCAAGATATTCTG
ATTCAACAACAAAAGATGGATCCCGTGGCTGAACAACTCACTGATGCCAT
GGATATCCAAGAATGATGACAGAAGGAAATTCTCACAAGAAAACAAAGAA
GAAGCTAAAGGAGAAGATGCCATTAAAAGCGAAGAAACTTTTGGTGTTGA
AAAGACCCTTGAAGAACATCATTCGCAAAAAACAATGTCGTCATCACAAT
ACCATCTTCAAAGTGGGGCAAAACCAATGCAGTGTAAAGCTGGTAAACGA
AAAAGACTAGCCTTCTTGAAAACTCACAAAACCGGTGGTGGTACATTAAC
CGGGATATTAAACCGGTTTACAGATTATCAACAGATTGACATTGCGATAC
CAAAAAATGACGTTCGGTTTAATTGGCCTGCATCGTTCAGCCACCAAGAA
GTACAGGTCTCTCGACTCAAGGACCGCAGAGCTGACATGTTGAATTTACA
TTCAGTTCTCAATCGACCAGAGCTGGGAAAAATCATGAAACCAGGTTTCA
AATTAGTCACCATATTAAGAGAACCTGTACGTCAATTTTATTCCATGTTT
TATTATTTGAATTTACCAAAGCATTATGGGATAGCAAATGAAAGTGATCC
GGTTTCCACCTTCATGGAGAACCCATATCGGTACCATCATTTTAAACCGT
TTTTGAAGGTCGGTCGAGAGCGTTATTTTGAAGAGAATCTAATTCATAAT
GGAAATTTGTACGATTTAGACTTCACGAGGTTCCAAGAGAAAGGAAAGGA
TAGAGGGTTAAGAGATTTTATTCAATATCTTGAGAAGGCGTTTCATTTGG
TTATGATCACTGAGAAATATGATGAAAGTTTATTACTGTTGAAGAAGCTC
ATGTGTTGGGACTTCATGGATATAGTCTACATGAAGAAACACGTCAACCA
TAACCTGCAGAATGAATCATTTGCCATTTCAAACGCGACGGCCGAAAGTA
TACGCGGCTGGAATTACTTCGACGCGGTCCTGTATAATCATTTCTCGAAA
CGATTAGATGAAATTATCGGGAAACAAGATAAAGAAAAGTTCAAAACAGA
TTTGATGTTGTTTCGCGAACTTAATGACGCTGTCGTGACATTTTGCTTAA
ACAACAGCACATCGACAGATGTGGATGGCACTATCCAAAAATTTGACAAA
ATATTAGAAGTCTTAAAAGACATCGGTGAAACACCTCCACCAGCGTTCCT
TGAAAAACCGGATTGTTTTTGCACTAAAATGAAACGAAACGAGAGAGACT
ACATGTTCTTTTTCGCAAAACGTTTCCCACCGTTTTACTTTATGAAAGGA
TTGAGTCGTCCCCAGTCCACGGACGATTGCTAATATTTGTAGTCCTCGTA
TTGTACGTGCTCGTCAATTTAGCGGATTGGAAAGAGCATTGGGATTCAAA
AAAGCAAGATATTCTGATTCAACAACAAAAGATGGATCCCGTGGCTGAAC
AACTCACTGATGCCATGGATATCCAAGAATGATGACAGAAGGAAATTCTC
ACAAGAAAACAAAGAAGAAGCTAAAGGAGAAGATGCCATTAAAAGCGAAG
AAACTTTTGGTGTTGAAAAGACCCTTGAAGAACATCATTCGCAAAAAACA
ATGTCGTCATCACAATACCATCTTCAAAGTGGGGCAAAACCAATGCAGTG
TAAAGCTGGTAAACGAAAAAGACTAGCCTTCTTGAAAACTCACAAAACCG
GTGGTGGTACATTAACCGGGATATTAAACCGGTTTACAGATTATCAACAG
ATTGACATTGCGATACCAAAAAATGACGTTCGGTTTAATTGGCCTGCATC
GTTCAGCCACCAAGAAGTACAGGTCTCTCGACTCAAGGACCGCAGAGCTG
ACATGTTGAATTTACATTCAGTTCTCAATCGACCAGAGCTGGGAAAAATC
ATGAAACCAGGTTTCAAATTAGTCACCATATTAAGAGAACCTGTACGTCA
ATTTTATTCCATGTTTTATTATTTGAATTTACCAAAGCATTATGGGATAG
CAAATGAAAGTGATCCGGTTTCCACCTTCATGGAGAACCCATATCGGTAC
CATCATTTTAAACCGTTTTTGAAGGTCGGTCGAGAGCGTTATTTTGAAGA
GAATCTAATTCATAATGGAAATTTGTACGATTTAGACTTCACGAGGTTCC
AAGAGAAAGGAAAGGATAGAGGGTTAAGAGATTTTATTCAATATCTTGAG
AAGGCGTTTCATTTGGTTATGATCACTGAGAAATATGATGAAAGTTTATT
ACTGTTGAAGAAGCTCATGTGTTGGGACTTCATGGATATAGTCTACATGA
AGAAACACGTCAACCATAACCTGCAGAATGAATCATTTGCCATTTCAAAC
GCGACGGCCGAAAGTATACGCGGCTGGAATTACTTCGACGCGGTCCTGTA
TAATCATTTCTCGAAACGATTAGATGAAATTATCGGGAAACAAGATAAAG
AAAAGTTCAAAACAGATTTGATGTTGTTTCGCGAACTTAATGACGCTGTC
GTGACATTTTGCTTAAACAACAGCACATCGACAGATGTGGATGGCACTAT
CCAAAAATTTGACAAAATATTAGAAGTCTTAAAAGACATCGGTGAAACAC
CTCCACCAGCGTTCCTTGAAAAACCGGATTGTTTTTGCACTAAAATGAAA
CGAAACGAGAGAGACTACATGTTCTTTTTCGCAAAACGTTTCCCACCGTT
TTACTTTATGAAAGGATTGAGTCGTCCCCAGTCCACGGACGATTGCTAAT
ATTTGTAGTCCTCGTATTGTACGTGCTCGTCAATTTAGCGGATTGGAAAG
AGCATTGGGATTCAAAAAAGCAAGATATTCTGATTCAACAACAAAAGATG
GATCCCGTGGCTGAACAACTCACTGATGCCATGGATATCCAAGAATGATG
ACAGAAGGAAATTCTCACAAGAAAACAAAGAAGAAGCTAAAGGAGAAGAT
GCCATTAAAAGCGAAGAAACTTTTGGTGTTGAAAAGACCCTTGAAGAACA
TCATTCGCAAAAAACAATGTCGTCATCACAATACCATCTTCAAAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071385-exon-scaffold_60-1575043694:1100015..1100265 | TCONS_00071385-exon-scaffold_60-1575043694:1100015..1100265 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1575043694:1099594..1099741 | TCONS_00071385-exon-scaffold_60-1575043694:1099594..1099741 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1575043694:1097060..1099018 | TCONS_00071385-exon-scaffold_60-1575043694:1097060..1099018 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1510915933:1100015..1100265 | TCONS_00071385-exon-scaffold_60-1510915933:1100015..1100265 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1510915933:1099594..1099741 | TCONS_00071385-exon-scaffold_60-1510915933:1099594..1099741 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1510915933:1097060..1099018 | TCONS_00071385-exon-scaffold_60-1510915933:1097060..1099018 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1491911889:1100015..1100265 | TCONS_00071385-exon-scaffold_60-1491911889:1100015..1100265 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1491911889:1099594..1099741 | TCONS_00071385-exon-scaffold_60-1491911889:1099594..1099741 | Clytia hemisphaerica | exon |
| TCONS_00071385-exon-scaffold_60-1491911889:1097060..1099018 | TCONS_00071385-exon-scaffold_60-1491911889:1097060..1099018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1097060..1100265 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009729 | Gal-3-0_sulfotransfrase |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009247 | glycolipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005794 | Golgi apparatus |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001733 | galactosylceramide sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009247 |
glycolipid biosynthetic process |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0001733 |
galactosylceramide sulfotransferase activity |
Blast
BLAST of TCONS_00071385 vs. Swiss-Prot (Human)
Match: G3ST3 (Galactose-3-O-sulfotransferase 3 OS=Homo sapiens GN=GAL3ST3 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 5.247e-22 Identity = 94/296 (31.76%), Postives = 137/296 (46.28%), Query Frame = 2
Query: 428 KRKRLAFXXXXXXXXXXXXXILNRFTDYQQIDIAIPKNDV--RFNWPASFSHQEVQVSRLKDRRADMLNLHSVLNRPELGKIMKPGFKLVTILREPVRQFYSMFYYLN--LPKHYGIANESDPVSTFMENPYRYH----HFKPFLKVGRERYFEENLIHNGNLYDLDFTRFQEKGKDRG-LRDFIQYLEKAFHLVMITEKYDESLLLLKKLMCWDFMDIVYMKKHVNHNLQNESFAISNATAESIRGWNYFDAVLYNHFSKRLDEIIGKQDKEKFKTDLMLFRELNDAVVTFCLNN 1288
K +AFLKTHKT G T+ IL RF + + +A+P +F +P +FS V + R +L H +R EL ++M P VTILREP F S+F Y N P + N S + F+ P Y+ HF F HN YDL + D L I+ +E+ F LVMI E +DESL+LL++L+ WD D++Y K + + AI A A + R WN DA LY+HF+ + + + + + RE ++ C +
Sbjct: 62 KHMTVAFLKTHKTAGTTVQNILFRFAERHNLTVALPHPSCEHQFCYPRNFSAHFVHPA---TRPPHVLASHLRFDRAELERLMPPSTVYVTILREPAAMFESLFSYYNQYCPAFRRVPNAS--LEAFLRAPEAYYRAGEHFAMF-------------AHNTLAYDLGGDNERSPRDDAAYLAGLIRQVEEVFSLVMIAEYFDESLVLLRRLLAWDLDDVLYAKLNARAASSRLA-AIPAALARAARTWNALDAGLYDHFNATFWRHVARAGRACVEREARELREARQRLLRRCFGD 338
The following BLAST results are available for this feature:
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