TCONS_00071378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071378
Unique NameTCONS_00071378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071378 ID=TCONS_00071378|Name=TCONS_00071378|organism=Clytia hemisphaerica|type=transcript|length=2182bp
CAAAATCAGGAAATAATCAATCATCTCAAGCTCAAATTTACAGATTAGGT
TATAAGAAAAGCACAAAATGAATGTAATAGATAGAGTAGAGTCTGCAAAA
CACACTTTGACAGGATCTGGAATTGGAAAAGCTGTTTCTAAGGCTACGTC
ACATGAGATTATTGGACCTAAAAGAAAACATGTGGATTatattACACATT
CACTTGAAGCCACAAACATTAGTATTCCAGAAGTAGCCGATAGTTTGTTT
GAGAGATGTAATAATTCTAGCTGGGTAGTTGTCTTTAAATCCTTGGTCAC
TGCACATCACCTTATGGCTAATGCAAACGAGcgATTCATTCAATATGTTG
CTTCTCGGCAAACACCATGGATGCTACAAACATTTTTAGATAAGGGTGGC
ATTCAAGGATATGACATGTCACACGCTGTTCGTAGATATTCCACTTATCT
AGCAGAAAAAGCATACTCATACAGACAAATGGGCTATGATTTTTGTCGAG
CAGCACGAGGAAGAGATAAAGGAGTACTAAGAAACATGGACACAACAAAG
CTACTTAAAGCCCTTCCAGTCATACAACAACAAATCGATTCACTCATATC
AACAGAGATAAATTCAAACGACCTTACAAATGGTGTGATCACTGCTGCTT
TCATGCTCCTTTTCAAGGATTTAATCAGAATATTTGCATGCTATAATGAT
GGCATCATCAATTTACtggaaaaatatttcgaaatgaaGAAACTGGATTG
TAGAAATGCTTtggaaatttacaaaaaattcttATCAAGAATGGAGCGTG
TTTCCGAGTTCCTGAAGACTGCAGAGGATGCTGGAATTGATAAAGGCGAC
ATTCCAGATTTGACAAAAGCGCCAGGCAGTTTACTGGAAGCTTTGGAACA
ACACTTGACATCCCTGGAGAAAGGAAAAAGTGCAGCGCCACCAACAAAAC
CGTTGACATTGCCTGCATTCAGTGGTGATTCCTCTATCAGTGCTTTCTCA
CAACCAGCATCTGCCACTTTCCAACAACCACCACCAGTTCAAGCCAGTAA
CAAAGAAGAAAGCGACTATTTGACGGAACAACGAAAAATATTAGAAGCTT
TCGAGAAGAAGAAACAATCACAAGATGTCGTCGTCCAACAAAATAATGTG
GTGCCCAATCCTCTTAATCCTCCAGCAAGCAAACAGCACCAACAGTCTGT
CAAATCTCCTTTTGCTCCAAGCCAACCGTTCGCCGCCCCAAGCCAACCAG
CTCAGCAACCAACTCAGCAACCAACTCTAAACGGATCTGcttccacaaac
aacaaaccGTCAGATGATTTGTTGATGCTTGGTGGCTCCTCAAACGCGTT
TTCAGTACAAAACACAATGCCATCCTCTAACTTCGCCTCTGCATTCAACT
CAACACCATCTTATGGTCAACCCCAACAGAACATGTTCGCTCAGCAACAA
CAATCCGTCGATTTCAACAACGCTTTTAACAACACTTCTACCTCTGCAAC
AGTAAACTCATCAAGCACACCAAACCTAATTGATGATCTGTTACAACCTG
AACGACCAAGCAGCTCGTCAGCGGCTATGACCACTATGGATAGTAACGTC
AGAATGACTGGAGATTTGGATACCGGACTTCAACGCATGGCTCAATCTCT
AGACGGTTTAAACATTAACCCCAACACAATGAAAGCGAACACTTCTAAAG
GTCATCAATGGAATCAACGTGGTGAAACGAAACTGACTGGTGGCAATAAC
TACCAAATACGAAATGTCACACCCTCCACCCTTCCGCCCATGAACACGAT
GGGTGGTATGGGTGGTGCACCTATGGGTGGAATGCAACCGCAAGGCATAA
TAGGAATGAACAGCATGGGTATGATgggacaacaacaacaattccAAATG
CAACCACAACAGCAATTTTACGGCATGAACCAAAGGCCGGCATTCGGTGG
AGGTATGATGCAACCACAACAAGGGGGCATGTACAACGCCAACATGGGTA
TGTCTGCCAGCGCAACAGGTGGTTTCAACGGCATGCAGATGCGACCGCAA
CAACAACCTATGATGATGGGAGGAGGAATGAACTCGAACAACCCGATGAT
GATGAACAACGATCCTTTCAAATAAACTCATTATTTCCCTTTTGCCTCTC
ACACCTATAGCTAATTTAATTCTTGATCACCC
Run BLAST on NCBI

transcript from alignment at scaffold_60:953353..967442-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071378 ID=TCONS_00071378|Name=TCONS_00071378|organism=Clytia hemisphaerica|type=transcript|length=14090bp|location=Sequence derived from alignment at scaffold_60:953353..967442- (Clytia hemisphaerica)
CAAAATCAGGAAATAATCAATCATCTCAAGCTCAAATTTACAGGTATACT
ACCAGCATCTCTTGTCTTTGGGCGTGGGTTTTCTTTAATAACTTTCTTTT
TATGCTCAAATCTGATTGGAAGCAGTAAGAAAGAACAATCAAGATTTTTT
TCTTATCAATGTTTGATGCCCAGACACGGTTTAAAATCCATCCATCAGCA
TCATAATCGAACGCCGAATCAATTGAATGCAATCTAACTCAAACAANAAT
GGCCAAATACCATGTACCGTGGTTTTTCTAATTTAACGCGTAGTCTAATT
TAACGCGTACCCTGTTTTTGGCGAAAAATCGTAATTAATTTTACCTTAAT
TATTAACGCGTAGCCAAAATTCTGCATAATTAATTTCACTCTAATTATTA
CGCGTGATCAAGCCTTGGACAAGAAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTATGTAATATATATTACACAAGCCTTTAACGCGTACTTAAAAC
ACTTGAATATCGTAATTAATTGTTCTCTAGTTTTTCACGCGTAGCGTCGA
AAATAATCATTTATTGCCACGCGTTAAATTAGAAAAACCATGGTAGGGTT
GCGTTTTTAGCGAATATAAAGAAATCGATATTAATCGATAACAATCGAAT
CCAATCGATAAGAACGTAAAGTCTTAGTATCGATTGGCTATCGATTGTTT
ATCGATTAGTTATCGATCACTATCGATTATTATCGATTAAGATCGATTAA
TATCGATTGATTTCCCGTATCGATTTCATCGATTGGGTACGCCTGGATTC
AATTATAGGTTTATATTACGTTTTTAATATACAACACCGATATTAGGCCG
ATGGAATTTAATGTTATGTTTACCGTAAGCCGCCCGCGTGTTCAAAAACC
TGCCGCATCAAGTTGTCATTATTTGCCATTTTCTCGAAAAGTTGTCATTA
TTTTTCTACGATGGTAGGGTGCGCACTCGTCGGGATTTTTTGCGCGGAAC
GAGGAAGAATTAAAAAAAATGAACTTCAAGGCATTAGTACTTACCTTTAA
ATCATCCAAATGTGTTCATTCTTTTTTTAAAATCAATCAGGAGTTATCAG
GAAAACAAGTAAAAAAAACTGCATCAAGGTATCTATTTTCTTTCCAAATA
TATTACGACCCTGCCGGTGCACCCGACAGTCGGGTGCTGTTGTCGGGTGC
TTGAAGTTAGAAATTTTAACACCCGACAGTCGGGTGCTGTTGTCGGGTGC
TTGAAGTTAGAAATTTTAACACCCGACAGTCGGGTGCACTTTGTCGGGTG
CTATATCTTTGACGCTCTTAACAGCACCCGACATGTAACGGGTATGTGGC
GATTTCCGAAGGGCGGAAAAACGGGTTCTTTTTACTACCGCCACCCCGCC
CGTAGTGGGCGCTCGGCGTTTTTGACGAAATTACTCTTTCGTCAAACCAA
TCTCTTTAGTTAAAAAATGTGATTTCTGATTCTCGGGTTTTGATGTTCTT
GGGAGAAGTTCACGGATTAACGTTTTTTTTCTTTTTATTCATTCATGCGT
AGGTTTTCCCTCTTCTGCCTACCTGAAAATCGTGTGTCATTAAACTCTTA
AATGACGTTCAATTTATCTGAGCTGATTGAGTAACTTCGTCAACTGGACG
CTATATATCACCTGGGTTTTCATTTTGTACCAAAAAGCTACTTGTATGCC
GAATTTTTTTTTCTATCTTTTTAGCGTACCCCCACTATTCTTATACAACC
ATTGCATACATACGTACGGTACATACAAACTGTTTGGATGGCTGGGGACA
ACGTGTGTGTTGCTCAAAAGAAGAAAATTGGACAACAACCTTTTTATAAT
ATAGATCATGTTCTAGACGTCACGGTTCCGTATCGTTCCAAAACGAAACG
GTTCTGAAACAAGTGTGAATAACGCCAAAATTTGAAAAAAAGAAAATAAG
AAGACGTTACAAAGCAAAGCAAATCGGAACGGTTTCGCTCCACTATTTTC
ATCGGAACAGAACTGCTCCGTTTTATTGCTCCGAAACGCTCCGAAACCAA
TATGAACACTATCGTGGAAACACTCACGGAAACCATACCGGAATGATACG
AGACCGTAACGTCTGAACATAATCTTACAGACAATCTTTGAAATACATAC
AATTAAAAATATGTAAAATAATAAATTATATATAAGGCCATTTGATCATC
AATGCATTCCCTCTGTTTTCTTTCTGAAGGAGATAGAAAGTAGAAAGATT
TATTAATAGACTACCACCCTTCACGATTTTGAATCTCTTGTCTATCCACA
GCTTTAATATCCATTTCACATTATGTCTGAGATTATAAGCCTGATAAAAT
ATTTTTAAAAGTATCCATAGAGTAACTAATTTAAAAAAAGCCATTCCTCT
CTCCGGAATTACGCATCTCCACAGGCCATTTAGAACGCCATGGACATTAC
GTCATTATGAAACTAAATATCAGATGAGATCGAGCTATTTATATCATGAT
ATTAAAGGTAATTAACGTCTTACCTGGATAAACCAGTACGTCCGTGTGTT
TTGTCATCATCAGAATGTCTAAAAAACGAAGAAAAGAAGAGAAAAAAGCG
AGTGGGTGGGATGTCATGCCTCAAACCTAAACACGGAGAAATAGATTGAC
CATCGAATGCAGGCTGGAATTTAAGAATATCGAAACATATGATCAAAGTA
GAGAATCAAAAGAAAGACACGGCAATTTTTTTACGACTAAAATGTAAATA
TCAAATTAAAAGTGATCACCTGTTATCGCTATTTGATTCATTTTCTCTTA
TTTGCGACTCTAAATAAAAAAAAATATATCGAGATTAAGTTGAAATGAGA
GGTTGGCCCTCAGAGGTAAAGGTTAATGTCAGGTATGGCGTTTCTATCGT
ATCGATCAGTAGTTAGTAACGTAAAAAAAACCTAGGATAGACGGGACGAA
GTTGCGCCCAAACTCGTACCCAGAGCCACTTGCATATCGCACTTTTTAAT
TTTACTTATGGACGCGATGCAATCGTTCCACGGATAAAAGAGCGCTATAT
CAGAATGATAAATTAAAAAAGCAAACTAAGGGACTGGGTTCGAGTTTGGG
TGATAATTGCCCTTATTATTACGCCGAAGCTTATTTTTCTCTACCTCAGA
ATTTTCGTCACTTTCCTGCCCCCGAAACTTTTTTCACCTTCACCGATTAG
GACTCGAAGATCTCTATTAAACCCATCGCTGATCCAATTTACACGCCGGC
CCTTTTCCGCCAGTGACGAGAAATAGCGCCTTATAAGGGCCGATGATGTT
CATATCATTTGACTGACGCCCATAGCATCGGAAAAGATGGCGGGAAATAG
TATAGGGCGTAAAACCGCCAAATGCCCATCAGGCGGTGTCGGGTGTTGAT
TGTCGGGTGTTCTCAATAAGTTAGGAATTTTAAGCACCCGACTGTCGGGT
GCACTATTTGTCGGGTGTTTTCGCAAATTTAGAAATTTCAGCACCCGACA
AAACACCCGACAGCACCCGACTGTCGGGTGCACCGGCAGGGTCGTAAGAT
ATTCATGTTTTTCAACGTCAAGGTGAAAATGCGATTTAGCACTGACCACG
GCACCGGAAAATTCTCGACCCACATTGAAACAAATGTGTCGCTATTAAGC
TGGTTCATCTTTTCAATCGCGGTTTTTTTAGTAAACCCAGGGTAAGATTA
GGCTACAATCTATCACAACCTGCTTTATTTGAAAATCTACAGGCCGTCTG
GAATTTCGAAAAATAAGAAGAAATTGCGATTTTTTAACAAGATTGCAGAT
TTTTTCATTTAAGCACCATACACCATCTGAAAGCTGAGGATTTCAGCTTT
CTAGGGGTGAAATTTGTTTTAAGCTATCATTTTCAGCTCATTAGCGATAG
GCTAAAGTTTAACAGTCATCGGGCCGATTTTCAGACCGCACCGGCAAAAC
TCCCCACACCCCGCCACACGGAAGACTAGATTTCATCTGCCATTTTTGGC
GTGATTTTGGTGCTTCCGAAAATTATTTCTTGCTGGCGTGGTGTAAGGAG
GCGATTCTTTCAAAAGGTGATTTTTTGTGTTTTGAAAATAGAATAACTTT
GGGAATACTTAACCAATTTTAATAAATGACCCCTCATTTTTCTCACNGAA
AATGGAATAACTTTGGGAATACTTAACCAATTTTAATAAATGACCCCTCA
TTTTTCTCACAAAGGTAAGGACTTTCAAATAAAATTAGTTTGGTTTTTTT
AAATTTGAGGGGAAAATTTTGTCCTGTCCACCCTAACGATGGCCCCTAAG
GCTCACCACGCACTTTCCAGTTCTTATATAAAATTTGTGAACTAGAACTG
TCTAGAGTCATGGCCCAGAAGGCTCAAAAGACACTGCGGGTTTTCAAATT
AGCGTCAATTTGACGTTAGTCGTGGGAAGAATTGATATGTGAGTGACCGT
TTTCGTTTATTCGTTTGATATTCATAAAATAAATGTTTATGGGAAAATAA
TGAATAATGAATAATGAAAACTTGGCCGCATCGAATTCTGAAAATCGTCA
TTACGGTAAACATATCATTAATTTCCATCAGCCTTATATATATTCAATTA
ATTAAATTTTTCACCCACGATCAGCCATTTTTTCTAAGAATAAAGAATAT
ATGCAGGATGATTAAGCATTTCCTTGCTTAGCTCCAAGGCTTTTAGTGTT
CCCGTTCGGACCTGCACATTTTTTTGTGTTTTGTGATGCGGTGGGTGTGG
TGAAAATAAGTATCAGTTACTGTAAGAACAGGCAGTTTGCTTGAGATTTG
ATTTGGTTGTTGAAGACCAGTTTGCGTCAGTCAGGGCCTCCTTTCACTTT
ATCGATATTACGCAAACGGCAGTGTGCGCTAAATTATTTTGGTTTCGCTT
TCGATTTCAAGCAAAGGTCTTAGCAACAGGGCGCGCGTACATAGCAACGG
GTCTGGGTAGAAAAATCTAAACATAAAATTCAAAAAAAATACCAATCGTA
TAGTGCACTAAAAAATACCCCCTTTCTATGTTTAGTTTGTTCTACCTTGG
ATTATAACTGAAAATATCTTCAAAAACCTTTGTCCGCTATCAGCCCGCGC
GTTAATCTTTACCCGCTTCAATTCTTAGATAATGAATAAGAGAGGTGCGC
TTAGCTAAGCCGTGCTCGCGGGCGATAAATTTATGCTTACTTATCTTGTA
TATTTAGTGGTATTTATACAATGAAAGGGATGTTGACAAAATATGCACGG
CGCTGACAAAATATGCACGGCATTGATTATGCAGGAGATGTTTGTAATAC
GTGAATTTGTTGTGATATGGAAAAGTGAAGTGTTCAAACAGATTGCCTAA
GTGTAGTCACTGTGTAAAAACTGCCATGAAAAATGTACTTTGAATGTACA
TTGAAATTCAAAGTAAAAACCATGTAAAAATTTGAAAACTTATGTCTCAA
CACCATACGTCTTATCTCTCTCAAAGCTCTCGTGTAACTGAAGTGAGAGT
AACAAAACAGAAAATGTGACTATGGGCGAAAAGAGTCTCAAGGGACGATG
ACGTAATGAAATATGTTTAATGTTGTGTATATGAAATAATTGATTTTATT
AATGATATACTAATGACTTTTGAAGTCATTTGAGAGTCCTTTAACAGCCT
CTTTGAAAAAAGGTCTATTCAACGCCTGTTAAAGAAAATAATTTGTAGAT
AGTTCTTTTTATCTTGAAATTTAGAAATACAAACAAAAAAGAATCAAATT
TAATATTTCTTTCCTATCTAGATTATATTAGCGTTAGAATACGGTAAATT
TTCACGAAAAATATTTCGCGATGGCAGTACGCCCAATCGCGCCCACGGGA
AAGTTCCAATTTTTAATTATCAGGAAATCGTGGAAACCGGTTCACCACGT
GGATAAAAAACATACGGAATGAAACCTGAGAGAAGATTTTCAACCAGATT
TATTCAGATAAAGCTATAAGAGGTTCATTACTTGTGGATTCAAAACCTAG
ATAAGCAAAAACGAAAGTTGTTGGAAAGGAAAGAGTAAACGCAGAAGGTT
TGGTTGTGTTGATCAGGTATGTTTTTATTCTATCTGAACTAATATTATAA
AAGATCAAGGAGGCCTTGTCTGGTTTGCGTGCAGAGTATGGCAGAAATCA
TCGAAGTCTCGGGGGCAAAGATTGCTTACTTTTCAAGCAAGAGCAGGAGC
AAAATTTTTATAATATCTACATTTCAGGGGCTGGCTTTTTTGTGGTGGGA
AACCAATCTCAGGGGCAGGGAGTTTTGATGTTGGCTATATTAAGTTGAAG
TTGGTTTGATATTCTACGTTTGACGTTTGATATTCGTTTGATATTCGTTT
GATATTCTCAAATTTGCGTTTTGAAGTATTTGCGACTACTTTTGGAATTG
GAAACTATTGGAAGCCAATAGAGTTTATTCTCAACGCTCTCCGTCGCATT
GTGCTCCCTCTAAAAATTTGTAACCGTCAAACCTCATTTCGGCCGAAATG
ACAAGTTGTCTGAAGATTGAAGATTCAATGAGCTTTGCTCTTCAGCTATT
TCTAAAAAACATCTAATTAATAATTAGACCATAATAATTTGAGATGGTTT
TTAATCAATGATAAACAACTTTTCAGAGCTCTCTGGTGCACCCATAGTTT
TGACCCCCCTTTCTTAATAAGGGGGGATGAGACCTTCCAAATGTAGAAGA
AAGATTTTGTTTTGCATCTCTTGAAAACTAGAAATTATTATTCTTTCATC
TCTAGGACAAGCAACCATAACATCAGACAGTTCCATCAATATGCCAAAAA
CATTTTGTTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACT
TCCTTTTATAGGATGAGCCATATTCATGCTGGTCTTCATGCTTTTAGCCT
CGCACTCCATCGCAGAGGCTAATCAATTTTAATGACTTTTTTGACTAATG
ACCAAGTTAAAATGTTTTAATTTTTTTATATTTGAGTATGAAAAAGGCAT
GCATTCAAATAATAAAGGTTTAAAATGTATGAACGCAGCATTTTTGAGGA
CCCACAACTTTTAAACTTTTCAAGGTACACACTTGAAATTTTCAGCAATG
AAACACTTCAGGGATAGCTCCAGGAAAAGTCAATTTTGAGTTTTCATATA
AATCCAAAATGGCGCCCTAGAAATTGAGTTCGAGTTTTCATACTAAATGC
CAATATTTCAAGCTAAAACTTGGTTTTCTCTGGCCAAAATCTCAAAAAGA
CAAAAATGATTTCAAATGGTGTCCTGAAATCTTTGGATCTTGGAAGTATT
TTGAAAATACTCTCAGAGAACCATAATGGTTTGGGTCAGAAATTTGCCCA
AGTTTGCCATTATGGAATGCATTTCCCACTAAAACGCGACATTTAGAATT
AAAGTCTAATTTTCNAACTCAAAAGTGATAGTGTGTTCATGCATACAGTG
GCTTAGAAATCAGTTGTGTCACATCTTATCACATCAGGCTAAAATCTCAA
AAATGCTTTCAATAGGGTCCTGAAATCAAATGGTGTTGAAAGTATTCTGG
AAATACTCTGGGAAAACTAAATGGTTTGGGTAAGAAATTTGCCAGAGTCA
GCCATTATGGAACTAACTGTATTTCCTACTAAAAATGTGATATTTATAGT
TAAAGTCTAATTTACTCATGCTAAAATCTCAAAAATGGTTTCAAATGGGG
TCCTGAAATTTTTTGGTGTTGAAAAACTCTTGGAAAACTAAGTTAGTTTA
GTATGAAGTGAGACAAGAGCCATGTTTTCTAAGAACAAGGCATGTGGTGT
TGTCAGAAATTTTGATTGTTGTCATATTTTGTCAATTGCCCTGAATTGCC
AATAATAATTTCATTGAGGAGCTTCGAAATTTAGAAAAATTACATGTTCT
CATCTTATAATTAACAATCTTATCTTGTTTTATAGATTAGGTTATAAGAA
AAGCACAAAATGAATGTAATAGATAGAGTAGAGTCTGCAAAACACACTTT
GACAGGATCTGGAATTGGAAAAGCTGTTTCTAAGGCTACGTCACATGAGA
TTATTGGACCTAAAAGAAAACATGTGGATTGTAAGTAAAATTTTTTTTCT
CAAGATGCTTTATTGTTGGGCTTTTTCACATTAATTATTTTTAAAGGTGA
CAATTCACATTATTTTGGATATTAGCCAAACCCTTATAGTTTTTGGCTAG
ACAATCCTCCATCAAAAAATAATTCATTCTTGCACTTTTAGATTTTCTAC
CATGAGTCGATTTATTATTTTGAGAAAATCTGAATTGCTAAACATTACAA
ATTCAAAAACAATTGGAAACAGTGTTGCCTGGCTGTGCCATCTAATTTTT
TCATAAACCTGAAGAAGTTATAAAATGTTTTCTGCTAATCCAAGCTTAAG
TTGAGAAGTGTCCCATAAGCTCCAGGGGCATGTCTTGAGGGTATTTGTCT
CTAGGGGCAATTGTCCAAAAGGGTAATTGTCCGAGAATCTTATTGAAATG
GGAATCTTCCATTAGTAAGCCTAATGTGAGAAATTAAAAATCGTGTATTT
TCTTTAACCTTTTCATTTTTAGATATTACACATTCACTTGAAGCCACAAA
CATTAGTATTCCAGAAGTAGCCGATAGTTTGTTTGAGAGATGTAATAATT
CTAGCTGGGTAGTTGTCTTTAAATCCTTGGTCACTGCACATCACCTTATG
GCTAATGCAAACGAGGTTTGACCATTAGTAGTAACTTTTCAATAAACTGT
GTTCTTATTTTGGTAATTATTTTCATAGGGGTCTTGATTTTCAAAGAAAG
TTATAAAGATAACATTTGTAGATTGTTGTCAAGAGTTTTTAATAATTGTG
ATTGATTGAACAGCGACTGTTATTTTTTTGTTTATTGTTGGTGGGCATCA
CTTCACAAAGTCATAGATGTTAAAGTTTTCTCCCTTTTTTTTCAAATTTC
CAGCGATTCATTCAATATGTTGCTTCTCGGCAAACACCATGGATGCTACA
AACATTTTTAGATAAGGGTGGCATTCAAGGTAAATACACCAACATTTATT
TACAGCATATTGTTTCAAAAGTTCTCCCGTATATTACCTTTTGTTTTGTT
GCACAAATTATTGTGCTTTCCCTGACAAAGAGTGACCAAAATATTCACGA
TACAAGTTTTAGAAATATCAATTTTAAGATCTAAAAGTAATGTTCCCTGA
CATATTTTCTTTTCTTTCTGTAGGATATGACATGTCACACGCTGTTCGTA
GATATTCCACTTATCTAGCAGAAAAAGCATACTCATACAGACAAATGGGC
TATGATTTTTGTCGAGCAGCACGAGGGTAAGCAGCTCTTTACAGTTTTGT
TCTAAAATCTTTTGTCATGTAGAGCGTATGTTTCATTCTGTTTTTTGTTG
TAAAACTGACGTGGAATAAAGATGCTTGGGGCTCAAAAGCTCTACGGTTT
CGTTATATTCCCTTTCTTAATTTTTACAGAAGAGATAAAGGAGTACTAAG
AAACATGGACACAACAAAGGTATGGCTTTGTATTTTTCTTTGTCTTAGCA
CATTTTCTATTAAATCAAAGAACAAAAATTCTTCCGGCTGATACCGGTAT
GGCATCTTTCCAGCACTTTTCCAACACTGTTGTTGAGTCCTACAATTTAT
AATTACAACCGAGAAACATTTTGACAGTAGTAGATTGTGTAACTGCTATT
ATTTGTTAGAAAAGAATTTGGACTGAGTAGAAACTTTGGCAAGCAATTTG
CTAGGAATGTGCCTGTAACAAAGAAAAAAGTAGGCAATTCGGTTGCAACA
ACTTTTCTGTTTTTGCTGGAAATTTAATTTTACCTTTTGCGTGGCTACTA
TAATTACATTGCCGGCTCCACCAAACAAATATATCCAGCAAAAACAAGGT
TGGTTTGTTACCGGCAAAGATATTATGCCCTATGAATTGGTCACAATTAT
GATAAAAGTGTTATGATATAATAGATGCACAAGTATGACTTGATTTTGAT
TTTAAAGTACCCATTTGTCTTGTTTTCAGCTACTTAAAGCCCTTCCAGTC
ATACAACAACAAATCGATTCACTCATATCAACAGAGGTACCAAAATGATT
TTATTATCAATTTATTATCGTGTTTGTATGCCATCTTTATTTTATTTTGG
ATTGTTGTTTTGAAAGGGGAATCAAAAGTTACATTTTTGTAACTTAGAAT
TGCAAGGAAACTTAAATACATTTACAGAATAAGTAACAAATTAATCTTTC
TATTCTCTCTTCAGATAAATTCAAACGACCTTACAAATGGTGTGATCACT
GCTGCTTTCATGCTCCTTTTCAAGGTTTTAACTTCATTCATTTGTTGAAT
GCATAACTAGAAAGACCACTGAAGACCATCGACCTACCCACTCTTAAGGG
GTACCTATCCACTCTTAAGGGAAACCTATCCACTTTTAAGGGGTACCTAT
CCGCTCTTAAGGGGTACCTATCCACTCTTTATAAGAGGTACCCCTATCCA
CCACTCTTAAGGAGTAACCCCCTTACAAAAATTTAATTGAAATTTTTAAC
CCCTCAGACCCCATTTTTTCATTGAGGTGAAATTCTCAATCTTTATCCAT
ATTTGAGGGAAGCAATACCCCCCTTTTAGGGTGAGATTTTTGAACCCAAG
GGCAATAGCTTAATAAAACCTAGTCTTATTGTTGATTGTGTTGTACTTTT
AGGATTTAATCAGAATATTTGCATGCTATAATGATGGCATCATCAATTTA
CTGGAAAAATATTTCGAAATGAAGAAACTGGATTGTAGAAATGCTTTGGA
AATTTACAAAAAATTCTTATCAAGAATGGAGCGTGTTTCCGAGTTCCTGA
AGACTGCAGAGGATGCTGGAATTGATAAAGGCGACATTCCAGATTTGACA
AAAGCGCCAGGCAGTTTACTGGAAGCTTTGGAACAACACTTGACATCCCT
GGAGAAAGGAAAAAGTGCAGCGCCACCAACAAAGTAATAAGCTAAAAAGT
TTCATCCCCCATTTTCCCAATTTTTCCATGATTGTACATTTGAGTACATT
TTGACTGGGGAGAAAAAATAAATAGATTTTTGCAATTTTAAAGAGAAAAC
ACTTTTAAACTGGTGTGTAGGAACACAAAACTAAACTGTTTAAAACTGAG
CTATTGTTTTTTTGTTCACAAGGTAGTCTGATTTTTAATTTCTTATCTTT
AGACCGTTGACATTGCCTGCATTCAGTGGTGATTCCTCTATCAGTGCTTT
CTCACAACCAGCATCTGCCACTTTCCAACAACCACCACCAGTTCAAGCCA
GTAACAAAGAAGAAAGCGACTATTTGACGGAACAACGAAAAATATTAGAA
GCTTTCGAGAAGAAGAAACAATCACAAGATGTCGTCGTCCAACAAAATAA
TGTGGTGCCCAATCCTCTTAATCCTCCAGCAAGCAAACAGCACCAACAGT
CTGTCAAATCTCCTTTTGCTCCAAGCCAACCGTTCGCCGCCCCAAGCCAA
CCAGCTCAGCAACCAACTCAGCAACCAACTCTAAACGGATCTGCTTCCAC
AAACAACAAACCGTCAGATGATTTGTTGATGCTTGGTGGCTCCTCAAACG
CGTTTTCAGTACAAAACACAATGCCATCCTCTAACTTCGCCTCTGCATTC
AACTCAACACCATCTTATGGTAAGATAAGTGAAATAGTTCGAGGTCAGGG
AAGCATGTGCCTTCCGGCCCGGCGATTTTTATGTTTTGAAAAATTTTATT
ATATGTCGGTGTGTTTTGGTTGAAGAGATTTCTTGAATCCTAAATACTTG
AAAATAGACAGTGTGACCAAACATACAATTCGAGCCTCGAATAGTTTGAA
ATTACTTAAAGCTAAGCCAAGTGAATTCCGCATGAGATTCGATTTAAAAA
TTCCCTGTTTACTTGATTTAACCGGTTAAGATGTTAACATTTTTCTCCTA
GGTCAACCCCAACAGAACATGTTCGCTCAGCAACAACAATCCGTCGATTT
CAACAACGCTTTTAACAACACTTCTACCTCTGCAACAGTAAACTCATCAA
GCACACCAAACCTAATTGATGATCTGTTACAACCTGAACGACCAAGCAGC
TCGTCAGCGGCTATGACCACTATGGATAGTAACGTCAGAATGACTGGAGA
TTTGGATACCGGACTTCAACGCATGGCTCAATCTCTAGGTACAACTCACT
GAATTGATCCATGAGGAACCGCCATTAGATAACCTTTGGACCTCCATGCT
TAGAAAATCAAGCTTACTCTTTAAGAGTGAAAGTTAATTTTGAATCCTTC
ACACTCGATCTAATTTTGTTCGAAAGGGAATACTGCACGATTGATTCATA
AACATTTGTTTTTTTATAAAGATTACTTTGACGCGAGATAAGCTATTTCA
AAATCAATTTTGAATTCTTTCTGTTTAAAAGAGGCCATTGTATTATATGG
TAGATCGTTGATGCATTTAGTTCCCCTCCAACAATTTTTTCAATCTTTTC
TAGACGGTTTAAACATTAACCCCAACACAATGAAAGCGAACACTTCTAAA
GGTCATCAATGGAATCAACGTGGTGAAACGAAACTGACTGGTGGCAATAA
CTACCAAATACGAAATGTCACACCCTCCACCCTTCCGCCCATGAACACGA
TGGGTGGTATGGGTGGTGCACCTATGGGTGGAATGCAACCGCAAGGCATA
ATAGGAATGAACAGCATGGGTATGATGGGACAACAACAACAATTCCAAAT
GCAACCACAACAGCAATTTTACGGCATGAACCAAAGGGTATGAATATAAC
TTCAAAAATTTCCATCTAAATGCTGTAGTCTTTTTTTTGGGGGGGGGGAT
GGGGTAAAAGCTCGATGAAAGCCTATAAAGATAAGCCAAGAAACATTTTC
GTGGAAAAAAATTTCTTCACCATGTGGCATTATTGTCCCTGACCAAAACT
TAAGGTCGTCGTCATCTTAACAATTCTATTTACTTCAATTCCAGCCGGCA
TTCGGTGGAGGTATGATGCAACCACAACAAGGGGGCATGTACAACGCCAA
CATGGGTATGTCTGCCAGCGCAACAGGTGGTTTCAACGGCATGCAGATGC
GACCGCAACAACAACCTATGATGATGGGAGGAGGAATGAACTCGAACAAC
CCGATGATGATGAACAACGATCCTTTCAAATAAACTCATTATTTCCCTTT
TGCCTCTCACACCTATAGCTAATTTGTAAGTGAGCTTATTTCGTTTGCTA
ATTTTTTTGTTTGTGATGATGTGTGATGTCTCGGATGAGGCATTGGTAGA
GTATCATAACAGATGACTCTCTAATTCGATCAAGGGATAAGCAAAAGCTC
TCTTTGAAATACCAAAAGTATTTTAAACGATATTCCATGTTTTTGTTCAA
ATTACAAAAATATTCCAATTATGGACGTTCGAATTAGAGATATGACTATG
TTCAGAAAGTGTCATTTTTTACTGGAGTACTAGTCAGTCTTGAAAAACTA
ATGGAAATAACAAGGAAAAATATGAAATGATTGATAATTATATGAAAAGC
CAAAAAAAGCACAATAGTGTAGTAAAGAATCAGTTTATGTTAGTAGCTGG
GAACACGATGAAGATAACGATTAGTTTAGCAGTAGAGGATGGTACATGAA
CTAGTATCATGGTTATTACGATTGTATGGCAAAGCGGTTGGTAAGAAAGG
AAGAAAGCAACGATGAAGAAATGGTGAATCAAGTTTTAGGCTGCTTTAAA
TTCGGTATTATACATAGAGGAGCATTTTTTTCTTCTGTTACGTTATATTT
TTCCCATTTCTTGTTTTTGTTTCAGAATTCTTGATCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044355XLOC_044355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071378-exon-scaffold_60-1575043694:967400..967442TCONS_00071378-exon-scaffold_60-1575043694:967400..967442Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:959113..959257TCONS_00071378-exon-scaffold_60-1575043694:959113..959257Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:958478..958620TCONS_00071378-exon-scaffold_60-1575043694:958478..958620Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:958164..958239TCONS_00071378-exon-scaffold_60-1575043694:958164..958239Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:957867..957969TCONS_00071378-exon-scaffold_60-1575043694:957867..957969Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:957674..957713TCONS_00071378-exon-scaffold_60-1575043694:957674..957713Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:957107..957163TCONS_00071378-exon-scaffold_60-1575043694:957107..957163Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:956869..956928TCONS_00071378-exon-scaffold_60-1575043694:956869..956928Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:956210..956490TCONS_00071378-exon-scaffold_60-1575043694:956210..956490Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:955524..955990TCONS_00071378-exon-scaffold_60-1575043694:955524..955990Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:955005..955241TCONS_00071378-exon-scaffold_60-1575043694:955005..955241Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:954406..954689TCONS_00071378-exon-scaffold_60-1575043694:954406..954689Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:953968..954198TCONS_00071378-exon-scaffold_60-1575043694:953968..954198Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1575043694:953353..953367TCONS_00071378-exon-scaffold_60-1575043694:953353..953367Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:967400..967442TCONS_00071378-exon-scaffold_60-1510915933:967400..967442Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:959113..959257TCONS_00071378-exon-scaffold_60-1510915933:959113..959257Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:958478..958620TCONS_00071378-exon-scaffold_60-1510915933:958478..958620Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:958164..958239TCONS_00071378-exon-scaffold_60-1510915933:958164..958239Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:957867..957969TCONS_00071378-exon-scaffold_60-1510915933:957867..957969Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:957674..957713TCONS_00071378-exon-scaffold_60-1510915933:957674..957713Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:957107..957163TCONS_00071378-exon-scaffold_60-1510915933:957107..957163Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:956869..956928TCONS_00071378-exon-scaffold_60-1510915933:956869..956928Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:956210..956490TCONS_00071378-exon-scaffold_60-1510915933:956210..956490Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:955524..955990TCONS_00071378-exon-scaffold_60-1510915933:955524..955990Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:955005..955241TCONS_00071378-exon-scaffold_60-1510915933:955005..955241Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:954406..954689TCONS_00071378-exon-scaffold_60-1510915933:954406..954689Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:953968..954198TCONS_00071378-exon-scaffold_60-1510915933:953968..954198Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1510915933:953353..953367TCONS_00071378-exon-scaffold_60-1510915933:953353..953367Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:967400..967442TCONS_00071378-exon-scaffold_60-1491911889:967400..967442Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:959113..959257TCONS_00071378-exon-scaffold_60-1491911889:959113..959257Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:958478..958620TCONS_00071378-exon-scaffold_60-1491911889:958478..958620Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:958164..958239TCONS_00071378-exon-scaffold_60-1491911889:958164..958239Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:957867..957969TCONS_00071378-exon-scaffold_60-1491911889:957867..957969Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:957674..957713TCONS_00071378-exon-scaffold_60-1491911889:957674..957713Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:957107..957163TCONS_00071378-exon-scaffold_60-1491911889:957107..957163Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:956869..956928TCONS_00071378-exon-scaffold_60-1491911889:956869..956928Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:956210..956490TCONS_00071378-exon-scaffold_60-1491911889:956210..956490Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:955524..955990TCONS_00071378-exon-scaffold_60-1491911889:955524..955990Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:955005..955241TCONS_00071378-exon-scaffold_60-1491911889:955005..955241Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:954406..954689TCONS_00071378-exon-scaffold_60-1491911889:954406..954689Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:953968..954198TCONS_00071378-exon-scaffold_60-1491911889:953968..954198Clytia hemisphaericaexon
TCONS_00071378-exon-scaffold_60-1491911889:953353..953367TCONS_00071378-exon-scaffold_60-1491911889:953353..953367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:953353..967442 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.9823	22.1713	7.02317	5.1592	24.7572	19.8178	40.8363	48.8261	47.7958	60.7474	54.6127	49.94	54.2653	54.359	33.2937	40.0895	35.2238	39.7691	43.5955	47.7517	31.159	35.6499	22.1972	31.1173	86.287	73.1653	31.9985	27.0993	24.2517	22.4737
Blast
[Close]
BLAST of TCONS_00071378 vs. Swiss-Prot (Human)
Match: AP180 (Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1 SV=2)

HSP 1 Score: 411.379 bits (1056), Expect = 5.028e-130
Identity = 181/286 (63.29%), Postives = 232/286 (81.12%), Query Frame = 2 
Query:   71 NVIDRVESAKHTLTGSGIGKAVSKATSHEIIGPKRKHVDYITHSLEATNISIPEVADSLFERCNNSSWVVVFKSLVTAHHLMANANERFIQYVASRQTPWMLQTFLDKGGIQGYDMSHAVRRYSTYLAEKAYSYRQMGYDFCRAARGRDKGVLRNMDTTKLLKALPVIQQQIDSLISTEINSNDLTNGVITAAFMLLFKDLIRIFACYNDGIINLLEKYFEMKKLDCRNALEIYKKFLSRMERVSEFLKTAEDAGIDKGDIPDLTKAPGSLLEALEQHLTSLEKGK 928
             + DR+ +A++++TGS + +AV KAT+HE++GPK+KH+DY+  +   TN++IP++AD+LFER  NSSWVVVFK+LVT HHLM + NERFIQY+ASR T + L  FLDK G  GYDMS  +RRYS YL EKA+SYRQM +DF R  +G D GV+R M   KLLK++P++Q QID+L+  +++ N+LTNGVI AAFMLLFKDLI++FACYNDG+INLLEK+FEMKK  C++ALEIYK+FL+RM RVSEFLK AE  GIDKGDIPDLT+AP SL+E LEQHL +LE  K
Sbjct:    5 TLTDRIAAAQYSVTGSAVARAVCKATTHEVMGPKKKHLDYLIQATNETNVNIPQMADTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAFSYRQMAFDFARVKKGAD-GVMRTMAPEKLLKSMPILQGQIDALLEFDVHPNELTNGVINAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKRFLTRMTRVSEFLKVAEQVGIDKGDIPDLTQAPSSLMETLEQHLNTLEGKK 289
The following BLAST results are available for this feature:
BLAST of TCONS_00071378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP1805.028e-13063.29Clathrin coat assembly protein AP180 OS=Homo sapie... [more]
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