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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071377 ID=TCONS_00071377|Name=TCONS_00071377|organism=Clytia hemisphaerica|type=transcript|length=4222bpRun BLAST on NCBI protein sequence of TCONS_00071377-protein >TCONS_00071377-protein ID=TCONS_00071377-protein|Name=TCONS_00071377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp MNVIDRVESAKHTLTGSGIGKAVSKATSHEIIGPKRKHVDYITHSLEATNRun BLAST on NCBI transcript from alignment at scaffold_60:950685..967467- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071377 ID=TCONS_00071377|Name=TCONS_00071377|organism=Clytia hemisphaerica|type=transcript|length=16783bp|location=Sequence derived from alignment at scaffold_60:950685..967467- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:950685..967467- >TCONS_00071377 ID=TCONS_00071377|Name=TCONS_00071377|organism=Clytia hemisphaerica|type=CDS|length=24696bp|location=Sequence derived from alignment at scaffold_60:950685..967467- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071377 vs. Swiss-Prot (Human)
Match: PICAL (Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=1 SV=2) HSP 1 Score: 403.675 bits (1036), Expect = 6.269e-124 Identity = 183/286 (63.99%), Postives = 228/286 (79.72%), Query Frame = 3
Query: 96 NVIDRVESAKHTLTGSGIGKAVSKATSHEIIGPKRKHVDYITHSLEATNISIPEVADSLFERCNNSSWVVVFKSLVTAHHLMANANERFIQYVASRQTPWMLQTFLDKGGIQGYDMSHAVRRYSTYLAEKAYSYRQMGYDFCRAARGRDKGVLRNMDTTKLLKALPVIQQQIDSLISTEINSNDLTNGVITAAFMLLFKDLIRIFACYNDGIINLLEKYFEMKKLDCRNALEIYKKFLSRMERVSEFLKTAEDAGIDKGDIPDLTKAPGSLLEALEQHLTSLEKGK 953
++ DR+ +A+H++TGS + K V KAT+HEI+GPK+KH+DY+ N++IP++ADSLFER NSSWVVVFKSL+T HHLM NERFIQY+ASR T + L FLDK G+QGYDMS +RRYS YL EKA SYRQ+ +DF + RG D GV+R M+T KLLK +P+IQ Q+D+L+ +NSN+LTNGVI AAFMLLFKD IR+FA YN+GIINLLEKYF+MKK C+ L+IYKKFL+RM R+SEFLK AE GID+GDIPDL++AP SLL+ALEQHL SLE K
Sbjct: 5 SLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK 289 The following BLAST results are available for this feature:
BLAST of TCONS_00071377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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