TCONS_00071367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071367
Unique NameTCONS_00071367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071367 ID=TCONS_00071367|Name=TCONS_00071367|organism=Clytia hemisphaerica|type=transcript|length=1128bp
AAAATTACACAATTATAAATTCAAACGTCCTGGTTAAAAAAGATGAAGTG
TTTTGTGATCTTCAACTCTCTACCAGATATATCTTATCTGTGGATGGATA
AAGAATTCAGAAGTCACATTATAAACAAAGGAATCTCTCTAATTAACCCT
GAAATGAAAGCATCGGATGTAGATGAAGAAACCATATTATCATTGGtggt
tcaatttttcaatcCAATGGTGAACTCCAATAAATACATGCGAGAAGTGA
ACAACGCCTACCAAACCATGAAATGTGATAATGGTTTTATATTTGTCATG
AACCAGTTAACAGAATTGTCATTATTTTGCATAGCTGTTTGTGGTGATGG
ACAAGAATCAGAATTATTCTTGCAAcggaaaatcaatttttttcatcgcA
TGTTGATATTTAGTTATGGACCATGCGCCGTCGATCATTTAAGGCCGCCG
TTCCCGGATAAGCGTCGTAAAGCCTGGAAAGAATTAGATAGATGGTTATC
TTCATGGACCACTCTGTGTCAACAGGAGCAAATGTATTTAGTTGAAGCTT
TAGAGAGATTGCACGTCAATCACCAATTGAACAGCATCTCCTTGAATCTA
CTTGGAGAAATTTTAGCTAAAAGTAACAGAGACAGTACCATGCATACGTT
ACTATTAGTCAATAATAAAGTGTTGGGATTATATTCAAACCAACGTTCTT
TGGAACTCCAATCTGCAGACATTTTACTTCTCATAGTTTTAATCAACAAG
AGCTTTCAATACGTGGATGAACTTGTACCCAAGAGTATTTATAGGACACC
AGAGCCTTTGGTGACAACCGTACAACAATGTACCGATGAATTACTATTCA
AAAGACCACCCAAAGAAACGAAAAGCAGTTCAACCGAAAGAGATTCGTCA
GCTTCTCCAGCTAATTTTGAATATCATTCTGCGCCATCAACACCCGTTGA
GGATCATGGTTTCAAAGAAGGTTTCTTTACGCCACGCAATTCAACAGTTT
TCACACCCATCCAACATAGCGAGGAGATTCCGAGACATCGTCGAAGTTCA
TCCAGCTCTTTACAAGACAGATTCTCAACGCCCTCAGTTTCAATGGATGG
AGATAGAAGGGGAATCGACTATGACCTG
Run BLAST on NCBI

protein sequence of TCONS_00071367-protein

>TCONS_00071367-protein ID=TCONS_00071367-protein|Name=TCONS_00071367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MKCFVIFNSLPDISYLWMDKEFRSHIINKGISLINPEMKASDVDEETILS
LVVQFFNPMVNSNKYMREVNNAYQTMKCDNGFIFVMNQLTELSLFCIAVC
GDGQESELFLQRKINFFHRMLIFSYGPCAVDHLRPPFPDKRRKAWKELDR
WLSSWTTLCQQEQMYLVEALERLHVNHQLNSISLNLLGEILAKSNRDSTM
HTLLLVNNKVLGLYSNQRSLELQSADILLLIVLINKSFQYVDELVPKSIY
RTPEPLVTTVQQCTDELLFKRPPKETKSSSTERDSSASPANFEYHSAPST
PVEDHGFKEGFFTPRNSTVFTPIQHSEEIPRHRRSSSSSLQDRFSTPSVS
MDGDRRGIDYDL
Run BLAST on NCBI

transcript from alignment at scaffold_60:764504..767084-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071367 ID=TCONS_00071367|Name=TCONS_00071367|organism=Clytia hemisphaerica|type=transcript|length=2581bp|location=Sequence derived from alignment at scaffold_60:764504..767084- (Clytia hemisphaerica)
AAAATTACACAATTATAAATTCAAACGTCCTGGTTAAAAAAGATGAAGTG
TTTTGTGATCTTCAACTCTCTACCAGATATATCTTATCTGTGGATGGATA
AAGAATTCAGAAGTCACATTATAAACAAAGGTTGGTTCTTTTTTGAGTAT
CAATATGGATTTTTTGAGTACACAAATTTGTATTTTTTGAGAAAGTTTTG
ACTTGAAAAACGTTTGTCTGTGTCAATTAAGTCGATTTGAAATTCAAGGT
TCATCCCTATTTCTGTCTAACTTAAGTATGAAGAAATGATAAAAGGTTTT
CGATCTATGTAAACGGGAATGGTTGAGAATAAGATAATTTAATAGATCCA
AATTTCATCTATCATGTTTGAGGAAACCTCAGAACTTTGAAATGTAAAAA
TCAAACAAGAAGAAATTAAATGTTTTCGATTATAACAATTTTAAGTTGCA
TTGACCTTTATTTAGCATTTTTTGTTACCTTTTAGTCAACATGTAATAAA
CCAATACAATTTATAATGGGATATTAGATATTAACATGGTTTAAATAGTC
ACTTTTTGACTTCAAATCTTTTCCATTATAGGAATCTCTCTAATTAACCC
TGAAATGAAAGCATCGGATGTAGATGAAGAAACCATATTATCATTGGTGG
TTCAATTTTTCAATCCAATGGTGAACTCCAATAAATACATGCGAGAAGTG
AACAACGCCTACCAAACCATGAAATGTGATAATGGTTTTATATTTGTCAT
GAACCAGTTAACAGAATTGTCATTATTTTGCATAGCTGTTTGTGGTGATG
GACAAGAATCAGAATTATTCTTGCAACGGAAAATCAATTTTTTTCATCGC
ATGTTGATATTTAGTTATGGACCATGCGCCGTCGATCATTTAAGGCCGCC
GTTCCCGGATAAGCGTCGTAAAGCCTGGAAAGAATTAGATAGATGGTTAT
CTTCATGGACCACTCTGTGTCAACAGGAGCAAATGTATTTAGTTGAAGCT
TTAGAGAGATTGCACGTCAATCACCAATTGAACAGCATCTCCTTGAATCT
ACTTGGAGAAATTTTAGCTAAAAGTAACAGAGACAGTACCATGCATACGT
TACTATTAGTCAATAATAAAGTGTTGGGATTATATTCAAACCAACGTTCT
TTGGAACTCCAATCTGCAGACATTTTACTTCTCATAGTTTTAATCAACAA
GAGCTTTCAATACGTGGATGAACTTGTACCCAAGAGTATTTATAGGACAC
CAGAGCCTTTGGTGACAACCGTACAACAATGTACCGATGAATTACTATTC
AAAAGACCACCCAAAGAAACGAAAAGCAGTTCAACCGAAAGAGATTCGTC
AGCTTCTCCAGCTAATTTTGAATATCATTCTGCGCCATCAACACCCGTTG
AGGATCATGGTTTCAAAGAAGGTTTCTTTACGCCACGCAATTCAACAGTT
TTCACACCCATCCAACATAGCGAGGAGGTACAACTTGTTCAGGACTTTTG
TATTACAAATTTTTCTATAAGGGCGTCCAATATTTAATTGTTTGAGTTTT
AAGTTTGAAAATGTTCTTAACATGTTATTATTTTCACCATTTTTTCATAT
TTTGTCCATTTTTGAGCGTTTTAAAGTCCGCAAAGCTTTAAACGTTCTTA
ACTTGCTCTTAATATGTTGGCCATCAAAGCCTTATATACTTACATAGTTT
GCTCTCATAAAAATGTGTTTATTTTAAGCATAAAATATTGTAAATCTAAA
ATACTAGAAAATATTATTTGAAGTGGACTGAGATGCTTACTGATGAAAAA
TTTATCCAAAATGGTAATTCATTGATCTTTATCATCCGTACTAGTCTGTA
TAGTCTTGCCCGGGGGGGGGGGGGTCTTGCAGTTACTCCTTGACACTATG
TGGAGTAGCTGCAATTTTGGACATTTTCTTCAGACACCACCACCCTTGCA
GTTATTCCATAGTGTACTAACTGATTTTATCCTCAAAATTGGTGTATACA
ACCCCCAAAAATGCCAAATTTGGCAATTTTTCCACCGAATTCCTCATTTT
TGATACCATCTTACTGGGTACGTCTTATTAACGACCGTTAAATATCTCAA
TCATTTTCCAAGTTTGTTAAAAAATATATTTCATGCCTTGATTGAAGAAA
AAAAATTTTTTTGACTTTTGAAAAAAATGTTTTGAATTGTCATAGTGTTT
ATATAATAACTGCATGACCCCCCTGTTTTGTCTTACCTTATTTAATAATT
TCCTTAGTAGTACAGTACAGTTCAGTCTCTTTAAATCGAACCTCTCTATA
ACGCGAATGTCTCCTCAACTCAAACAAGTTTCACGGTCCCTTCACTTCAC
AATGCTTTAGAAACCTTACTCCATGAATCGAGATCTCCTTAACTCGAACA
AGTTTATGTTTCCCGTGCGTGTTCGAGTTACAGAGACTCTGCTGTAGTTA
ATTCAAAGTATATTAATTCTTGGTTCTAGATTCCGAGACATCGTCGAAGT
TCATCCAGCTCTTTACAAGACAGATTCTCAACGCCCTCAGTTTCAATGGA
TGGAGATAGAAGGGGAATCGACTATGACCTG

Coding sequence (CDS) from alignment at scaffold_60:764504..767084-

>TCONS_00071367 ID=TCONS_00071367|Name=TCONS_00071367|organism=Clytia hemisphaerica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_60:764504..767084- (Clytia hemisphaerica)
ATTCCGAGACATCGTCGAAGTTCATCCAGCTCTTTACAAGACAGATTCTC
AACGCCCTCAGTTTCAATGGATGGAGATAGAAGGGGAATCGACTATGACC
TGGAATCTCTCTAATTAACCCTGAAATGAAAGCATCGGATGTAGATGAAG
AAACCATATTATCATTGGTGGTTCAATTTTTCAATCCAATGGTGAACTCC
AATAAATACATGCGAGAAGTGAACAACGCCTACCAAACCATGAAATGTGA
TAATGGTTTTATATTTGTCATGAACCAGTTAACAGAATTGTCATTATTTT
GCATAGCTGTTTGTGGTGATGGACAAGAATCAGAATTATTCTTGCAACGG
AAAATCAATTTTTTTCATCGCATGTTGATATTTAGTTATGGACCATGCGC
CGTCGATCATTTAAGGCCGCCGTTCCCGGATAAGCGTCGTAAAGCCTGGA
AAGAATTAGATAGATGGTTATCTTCATGGACCACTCTGTGTCAACAGGAG
CAAATGTATTTAGTTGAAGCTTTAGAGAGATTGCACGTCAATCACCAATT
GAACAGCATCTCCTTGAATCTACTTGGAGAAATTTTAGCTAAAAGTAACA
GAGACAGTACCATGCATACGTTACTATTAGTCAATAATAAAGTGTTGGGA
TTATATTCAAACCAACGTTCTTTGGAACTCCAATCTGCAGACATTTTACT
TCTCATAGTTTTAATCAACAAGAGCTTTCAATACGTGGATGAACTTGTAC
CCAAGAGTATTTATAGGACACCAGAGCCTTTGGTGACAACCGTACAACAA
TGTACCGATGAATTACTATTCAAAAGACCACCCAAAGAAACGAAAAGCAG
TTCAACCGAAAGAGATTCGTCAGCTTCTCCAGCTAATTTTGAATATCATT
CTGCGCCATCAACACCCGTTGAGGATCATGGTTTCAAAGAAGGTTTCTTT
ACGCCACGCAATTCAACAGTTTTCACACCCATCCAACATAGCGAGGAGAT
GAAGTGTTTTGTGATCTTCAACTCTCTACCAGATATATCTTATCTGTGGA
TGGATAAAGAATTCAGAAGTCACATTATAAACAAAGATTCCGAGACATCG
TCGAAGTTCATCCAGCTCTTTACAAGACAGATTCTCAACGCCCTCAGTTT
CAATGGATGGAGATAGAAGGGGAATCGACTATGACCTGGAATCTCTCTAA
TTAACCCTGAAATGAAAGCATCGGATGTAGATGAAGAAACCATATTATCA
TTGGTGGTTCAATTTTTCAATCCAATGGTGAACTCCAATAAATACATGCG
AGAAGTGAACAACGCCTACCAAACCATGAAATGTGATAATGGTTTTATAT
TTGTCATGAACCAGTTAACAGAATTGTCATTATTTTGCATAGCTGTTTGT
GGTGATGGACAAGAATCAGAATTATTCTTGCAACGGAAAATCAATTTTTT
TCATCGCATGTTGATATTTAGTTATGGACCATGCGCCGTCGATCATTTAA
GGCCGCCGTTCCCGGATAAGCGTCGTAAAGCCTGGAAAGAATTAGATAGA
TGGTTATCTTCATGGACCACTCTGTGTCAACAGGAGCAAATGTATTTAGT
TGAAGCTTTAGAGAGATTGCACGTCAATCACCAATTGAACAGCATCTCCT
TGAATCTACTTGGAGAAATTTTAGCTAAAAGTAACAGAGACAGTACCATG
CATACGTTACTATTAGTCAATAATAAAGTGTTGGGATTATATTCAAACCA
ACGTTCTTTGGAACTCCAATCTGCAGACATTTTACTTCTCATAGTTTTAA
TCAACAAGAGCTTTCAATACGTGGATGAACTTGTACCCAAGAGTATTTAT
AGGACACCAGAGCCTTTGGTGACAACCGTACAACAATGTACCGATGAATT
ACTATTCAAAAGACCACCCAAAGAAACGAAAAGCAGTTCAACCGAAAGAG
ATTCGTCAGCTTCTCCAGCTAATTTTGAATATCATTCTGCGCCATCAACA
CCCGTTGAGGATCATGGTTTCAAAGAAGGTTTCTTTACGCCACGCAATTC
AACAGTTTTCACACCCATCCAACATAGCGAGGAGATGAAGTGTTTTGTGA
TCTTCAACTCTCTACCAGATATATCTTATCTGTGGATGGATAAAGAATTC
AGAAGTCACATTATAAACAAAGATTCCGAGACATCGTCGAAGTTCATCCA
GCTCTTTACAAGACAGATTCTCAACGCCCTCAGTTTCAATGGATGGAGAT
AGAAGGGGAATCGACTATGACCTGGAATCTCTCTAATTAACCCTGAAATG
AAAGCATCGGATGTAGATGAAGAAACCATATTATCATTGGTGGTTCAATT
TTTCAATCCAATGGTGAACTCCAATAAATACATGCGAGAAGTGAACAACG
CCTACCAAACCATGAAATGTGATAATGGTTTTATATTTGTCATGAACCAG
TTAACAGAATTGTCATTATTTTGCATAGCTGTTTGTGGTGATGGACAAGA
ATCAGAATTATTCTTGCAACGGAAAATCAATTTTTTTCATCGCATGTTGA
TATTTAGTTATGGACCATGCGCCGTCGATCATTTAAGGCCGCCGTTCCCG
GATAAGCGTCGTAAAGCCTGGAAAGAATTAGATAGATGGTTATCTTCATG
GACCACTCTGTGTCAACAGGAGCAAATGTATTTAGTTGAAGCTTTAGAGA
GATTGCACGTCAATCACCAATTGAACAGCATCTCCTTGAATCTACTTGGA
GAAATTTTAGCTAAAAGTAACAGAGACAGTACCATGCATACGTTACTATT
AGTCAATAATAAAGTGTTGGGATTATATTCAAACCAACGTTCTTTGGAAC
TCCAATCTGCAGACATTTTACTTCTCATAGTTTTAATCAACAAGAGCTTT
CAATACGTGGATGAACTTGTACCCAAGAGTATTTATAGGACACCAGAGCC
TTTGGTGACAACCGTACAACAATGTACCGATGAATTACTATTCAAAAGAC
CACCCAAAGAAACGAAAAGCAGTTCAACCGAAAGAGATTCGTCAGCTTCT
CCAGCTAATTTTGAATATCATTCTGCGCCATCAACACCCGTTGAGGATCA
TGGTTTCAAAGAAGGTTTCTTTACGCCACGCAATTCAACAGTTTTCACAC
CCATCCAACATAGCGAGGAGATGAAGTGTTTTGTGATCTTCAACTCTCTA
CCAGATATATCTTATCTGTGGATGGATAAAGAATTCAGAAGTCACATTAT
AAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044349XLOC_044349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071367-proteinTCONS_00071367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071367-exon-scaffold_60-1575043694:766955..767084TCONS_00071367-exon-scaffold_60-1575043694:766955..767084Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1575043694:765608..766503TCONS_00071367-exon-scaffold_60-1575043694:765608..766503Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1575043694:764504..764605TCONS_00071367-exon-scaffold_60-1575043694:764504..764605Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1510915933:766955..767084TCONS_00071367-exon-scaffold_60-1510915933:766955..767084Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1510915933:765608..766503TCONS_00071367-exon-scaffold_60-1510915933:765608..766503Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1510915933:764504..764605TCONS_00071367-exon-scaffold_60-1510915933:764504..764605Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1491911889:766955..767084TCONS_00071367-exon-scaffold_60-1491911889:766955..767084Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1491911889:765608..766503TCONS_00071367-exon-scaffold_60-1491911889:765608..766503Clytia hemisphaericaexon
TCONS_00071367-exon-scaffold_60-1491911889:764504..764605TCONS_00071367-exon-scaffold_60-1491911889:764504..764605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:764504..767084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.2814	3.0493	2.27293	2.99346	1.40564	1.35759	0.59559	0.975772	0.22772	0.604432	0	0.0514211	0.154049	0.159981	0.263052	0.423443	0.521648	0.564376	0.205188	0.171772	0.373252	0.655414	1.10659	0.845079	0.45593	0.369915	0.476413	0.621427	0.599875	0.523867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004353Mon1
Blast
[Close]
BLAST of TCONS_00071367 vs. Swiss-Prot (Human)
Match: HPS1 (Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.380e-21
Identity = 90/339 (26.55%), Postives = 160/339 (47.20%), Query Frame = 1 
Query:   43 MKCFVIFNSLPDISYLWMDKEFRSHIINKGISLINPEMKASDVDEE--TILSLVVQFFNPMVNSNKYMREVNNAYQTMKCDNG-FIFVMNQLTELSLFCIAVCGDGQESELFLQRKINFFHRMLIFSYGPCAVD------HLRPPFPDKRRKAWKELDRWLSSWTTLCQQEQMYLVEALERLHVNHQLNSISLNLLGEILAKS-------NRDSTMHTLLLVNNKVLGLYSNQRSLELQSADILLLIVLINKSF---QYVDELVPKSIYRTPEPLVTTVQQCTDELLFKRPPKETKSSSTERDSSASPANFEYHSAPSTPVEDHG---FKEGFFTPRNS 993
            MKC ++     ++ + W D+EF   +  K     N E +   ++++  T+L+ V+      ++S   + ++++ Y     +NG F++V++   E  LF IA+ GD  ESE  L+RK+     +    +G   VD       LRPP   +R + W+     L +++ L +QEQ + VEALERL ++ QL  + +  L   + ++         +  +H  LLV++K+L  YS+  +  L+ AD+L LI+L+   +      ++ +  S  R        VQQ          P    S+ TE DS + P  + +  APS   +  G   + EG   P ++
Sbjct:    1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVI------ISSMTMLEKLSDTYTCFSTENGNFLYVLHLFGE-CLF-IAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERL-IHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSP--HSTGPTGGSSAETETDSFSLPEEY-FTPAPSPGDQSSGSTIWLEGGTPPMDA 327
The following BLAST results are available for this feature:
BLAST of TCONS_00071367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPS16.380e-2126.55Hermansky-Pudlak syndrome 1 protein OS=Homo sapien... [more]
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