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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071365 ID=TCONS_00071365|Name=TCONS_00071365|organism=Clytia hemisphaerica|type=transcript|length=823bp
AATTATTTCTGATGGCGTCTCTCTATTGAAATTTGATGACTTGATGAGCG
GATTTAGGGTGATAAAGATCAAAATCCTTTGGTCTTTTTACTGagagcaa
aattttgtttttcgaattcaactttttcaaacgCTCTAGAGACATTGAGA
AGCTAGGAGCTCTTCTGAAATGCTTTAAGACTGGGACCCGTTCAAATCTT
CCAGTGGTTGTTTTAAAATGGATATGGAAATTTATTTTCCTCATTGGTTT
GATGAAATTCAGATGGTGGTTTCGGTTTAaacattttcaacttttacTTA
TTAACAATTCACAGACAACTTCCAATTTAACCACGGATCAGCTAGTGGCA
CCTACCGTCAACGTCAATATTGATTCGAACAATTCTTTATACAATCTCAT
CAAGCAACGAATATGGGACTATTGGCAATATTCTGAAACCATGCTGTCTA
AAGGTTATACATCATTCATGCTGAGAGACGGCGACTTTTGTTATTCTTAC
TTTATATGGTTCGAAGATTCGTTAAGGAAACCAATGTTGTCACAAAAATC
CATGAAAGGCTTGAACGAAAATAAACCGACTGGTATTTTGTCTGGAAATT
ATTACAAGGACCTGATGTGTCACCTCTTCCCGTCAGAACCGAAAGGTAGC
ATCAACTGTTACGAACTCTTTTGCGTCCACGTTGGATTAGTAAGTAACCA
ATACGTCGCAAGTTCCTGTAAGAAGTTATCTCGCAAATTGGAAGGTTCCG
GTGAGATCGTTGTTTTatgatattattatattatttttgtagttttggat
tctggaaaatttgaaaatgtcag Run BLAST on NCBI transcript from alignment at scaffold_60:755600..757391- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071365 ID=TCONS_00071365|Name=TCONS_00071365|organism=Clytia hemisphaerica|type=transcript|length=1792bp|location=Sequence derived from alignment at scaffold_60:755600..757391- (Clytia hemisphaerica)
AATTATTTCTGATGGCGTCTCTCTATTGAAATTTGATGACTTGATGAGCG
GATTTAGGGTGATAAAGATCAAAATCCTTTGGTCTTTTTACTGAGAGCAA
AATTTTGTTTTTCGAATTCAACTTTTTCAAACGCTCTAGAGACATTGAGA
AGCTAGGAGCTCTTCTGAAATGCTTTAAGACTGGGACCCGTTCAAATCTT
CCAGTGGTTGTTTTAAAATGGATATGGAAATTTATTTTCCTCATTGGTTT
GATGAAATTCAGATGGTGGTTTCGGTTTAAACATTTTCAACTTTTACTTA
TTAACAATTCACAGACAACTTCCAATTTGTAAGTTTCAAAGATTCGAAAG
GATTTTTAGTTATAAGTCCTATATCTGAGCTGTCTATACTTCTCATTAAT
CTAAAAATATCTCGGAACTGCTTTATTTAACTTGTTCGATCCCTCAGAGC
ACCTGAAAGTCTTCCTTCATACAGATATTATCTATCTTCACAGAGTTAGC
TGGTCTTCAACGAGTTCTGCTTGGCGAACCTGAAATGTTTATCTAAGTGT
ACCGTTAACGAGCCTATTGGGAGCACTTTATAGTTCTTTTTAGTTCTTGA
GAGTCGAAATTTTTTGTGGTTTTTACTTTCGCTATAATATTTGGAATATT
TTAAGCATTGAGCTTCTGTGCCACCTGGATTTCTCATCTGAGTATCCATA
ATGGTGGATTTTCAGCGAATGACCCTTCTGGGACCCCCTCAGCAAAAAGT
GAATTTTTTTCGTGCCAAACATGGGCTGGTCATATATCAATCGATCTGAA
ATGTCTTACTGATCATTTTTGAGATACAAACTTGGTTCTGCAAAGTTTGC
TTTCTCAAGATATAGAGCATTTTCGTTTTATTAAATATGACTTTTCTTCA
ATATCCATTCTATTTACAGAACCACGGATCAGCTAGTGGCACCTACCGTC
AACGTCAATATTGATTCGAACAATTCTTTATACAATCTCATCAAGCAACG
AATATGGGACTATTGGCAATATTCTGAAACCATGCTGTCTAAAGGTTATA
CATCATTCATGCTGAGAGACGGCGACTTTTGTTATTCTTACTTTATATGG
TTCGAAGATTCGTTAAGGAAACCAATGTTGTCACAAAAATCCATGAAAGG
CTTGAACGAAAATAAACCGACTGGTATTTTGTCTGGAAATTATTACAAGT
AAGATTTTACATTTCTCACAATTATTTTTATTTTGAGCCCAGCATGGGGC
CTTTTATTAGCATGTCGCTGTCCGTGGTACTGAATTGTCCGTTTTTGAAG
AAGCAGCGCTTTGTCAATTCAAGTTCATTTTTGAAGAAATGGCGTCTTCT
GATGCGTGTATACATTGCAAACAAACGACAATTGCGACTCTTGCTATGTC
GCTGGACTTTAATGACGCTTCGACTTCTCGTTTGTTATTTGATATGCCAC
TCACTCATTTTTATTGTTTATGTATCGAAGATCAAGCTAAACCTCTGCCT
TAGATGTCCTTCATATCGCAAAAGTAAAAGAAAAAGCCCTTCATTAGTAT
TATTCCTCCATTTTTTTCACCATCAGGGACCTGATGTGTCACCTCTTCCC
GTCAGAACCGAAAGGTAGCATCAACTGTTACGAACTCTTTTGCGTCCACG
TTGGATTAGTAAGTAACCAATACGTCGCAAGTTCCTGTAAGAAGTTATCT
CGCAAATTGGAAGGTTCCGGTGAGATCGTTGTTTTATGATATTATTATAT
TATTTTTGTAGTTTTGGATTCTGGAAAATTTGAAAATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071365-exon-scaffold_60-1575043694:757064..757391 | TCONS_00071365-exon-scaffold_60-1575043694:757064..757391 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1575043694:756194..756472 | TCONS_00071365-exon-scaffold_60-1575043694:756194..756472 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1575043694:755600..755815 | TCONS_00071365-exon-scaffold_60-1575043694:755600..755815 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1510915933:757064..757391 | TCONS_00071365-exon-scaffold_60-1510915933:757064..757391 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1510915933:756194..756472 | TCONS_00071365-exon-scaffold_60-1510915933:756194..756472 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1510915933:755600..755815 | TCONS_00071365-exon-scaffold_60-1510915933:755600..755815 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1491911889:757064..757391 | TCONS_00071365-exon-scaffold_60-1491911889:757064..757391 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1491911889:756194..756472 | TCONS_00071365-exon-scaffold_60-1491911889:756194..756472 | Clytia hemisphaerica | exon |
| TCONS_00071365-exon-scaffold_60-1491911889:755600..755815 | TCONS_00071365-exon-scaffold_60-1491911889:755600..755815 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:755600..757391 - |
Blast
BLAST of TCONS_00071365 vs. Swiss-Prot (Human)
Match: HPS1 (Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.877e-20 Identity = 45/149 (30.20%), Postives = 81/149 (54.36%), Query Frame = 3
Query: 330 TTDQLVAPTVNVNIDSNNSL-----YNLIKQRIWDYWQYSETMLSKGYTSFMLRDGDFCYSYFIWFEDSL-------RKPMLSQKSMKGLNENKPTGILSGNYYKDLMCHLFPSEPKGSINCYELFCVHVGLVSNQYVASSCKKLSRKL 740
TT Q+VAP++N + +++ L +K ++W Q + L KGYT+ + ++GDF SYF+WFE+ + P+LS S+ P G+L G+YY+ L+ + + P ++ CYEL +H+ ++ + +L+R+L
Sbjct: 550 TTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSV-------PIGMLGGDYYRKLLRYYSKNRPTEAVRCYELLALHLSVIPTDLLVQQAGQLARRL 691
The following BLAST results are available for this feature:
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