TCONS_00071362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071362
Unique NameTCONS_00071362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071362 ID=TCONS_00071362|Name=TCONS_00071362|organism=Clytia hemisphaerica|type=transcript|length=2064bp
ttagattttaaCCATGTAAGAGATAATGCAACAATGATTAAACTGTGATG
CACACAAGACTTTGTCTTTAATGGAGTTACTACTGATCAAAGGTTTTATA
ACTTTGAGTGAGGAGACACTTCTTTTGGCAAATATTTGTAATGGCTTATC
ATTGGGCTTCACCTCCATTGCATGTACAATATTTTTACTCAACCTGGATC
AACTGAGTTCTGTACAACACCTTATCAATTNATTGCATGTACAATATTTT
TACTCAACCTGGATCAACTGAGTTCTATACAACACCTTATCAATTGGCCA
AGAAAAAAACCAACTGTCATACTGTATTCCATGTTAATGATATTCTATAT
TGGTAGACAAATATTTGTTTTGGCTGCTTTGAACTCACTTAAAATCCGAA
ACTCCGATTTTAGAACAAATGTAGCACTTCAGATCATGGTGATTTACTTT
AGTCTTATGTTTTACTGCATGAAAGTTGCACTATATTTAAGAGCTGTAAG
GGATGTAGTTTATGCATTACAGAGACATGGAAAAGGAAAGATACACTGGA
GATATTATTCTGTTGTGATTGTACCAACAATATTAGCTGTGCTATTTATA
TCAGAGTGTTACTCAAACGACAAACAATGGACCCAACAAATGTTTGATCG
AACCTACGTTAAGGTCATTCTTTTGGTGCTGATGGGATTCACAGCTTTGA
TTGGATTCGGTTCAACGATCACCATTTTGACACAGCAAATATTGAATTTT
AGAAGCCTCGACCTGAGCTTCAGCGATGGGTTTACCAGACTATCACAAGC
TAACCGtttaagaaacatttttgtGACATCAGTTATCGTTACTGTGTTTT
TGTCGAATAATATAAACTTTGCCCTTGTCGAATTTAATGCTGTTCAACCT
AAACTTGTGATTGTTGATAGCGTTTTCCATTTATTGTTGGGGCTTCACTT
CCTTGTTTTGGAATGGTGGTTTCATGATAAGGAATTGAGGACGCCTTTCA
AATGGCAACGCCAGCGAGAAGTTCGAAAATTAGCACAAAAATCACGTCAT
GTTGCCTTCACAAGCCACAAATCATCTGAAAGTCTTGCTGTTATCCAGTG
AAAGATTGGAATTTTGTGACTGGTTTTGTAAGAAAGTCctactttctttt
ttaatttagcaaatttttatttatttaaaggGGTACAAGGGAATAATAAA
TTAATATTAAAAGACTGTTACTTTAAATAGAGCTAATATTGCTAAATGCA
AAGGGAAACNACTTCTTTTTCTAAACAATTTCCGTTCAATGGACACTCAT
TCTTCTTTCTGCAGTTGCACAATTTTTCGTTTTCATTATTTGTATCTACT
TGgtgatttaaaactttcttattGTGTGCTGATATAATTCTCGAAACAGT
TGGAAGGCAGCTATAACTAACTTTCAGGTTGTTACGNATTTGAATTCAAA
agcagctgcgctggaaggtcaggaCGAAAACCTTAGAGCAATGTAACGGA
GAAGTGTTGATATTTAAGAAGCCTAGCATTTCAAAAGCTTCACATGTTTT
AAAAGCTCATTTGGTGGAAACTTCAGAGAAAAGAAGGATCAAACTATCTA
TCATATTCGTCTGTTGGTGTCATATCATTGTGTGTATAGTTGCTTCCTTT
CGGTTCACCAGGCTCTTTCCGTCTGTTATGCTAATTTATGCTAATTGAGT
GAAGTGAAACGAGGGGAGAAAGTTCCAAATTCGCAACAAAAGACCATCCA
TCGGTATCTTAAGCTTGCAAAAGAATCCctttatatcaaaattttgagaa
acaTTTCGCATGAGAACGAATCTTGACATGGCTGTAAATCCATAAATAGA
GCTGTTTGGAGCATGGTATTGAACAACATGTTTAAGAGCAGTCTCGCCAA
TCATTACATTTGCAGCAAAACTCAAATTGTATAGGTTTGTACAGCTTTGT
AACCTGCATGAACCAGGAAATCTCATTGGATCAATTTAAGGTATTGTCAA
GTTCTGGAAATCTTCTTCCTCAGATATTGCATCACAGCACCGTCGGACat
ttcctgaaaaatga
Run BLAST on NCBI

transcript from alignment at scaffold_60:646089..652192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071362 ID=TCONS_00071362|Name=TCONS_00071362|organism=Clytia hemisphaerica|type=transcript|length=6104bp|location=Sequence derived from alignment at scaffold_60:646089..652192- (Clytia hemisphaerica)
TTAGATTTTAACCATGTAAGAGATAATGCAACAATGATTAAACTGTGATG
CACACAAGACTTTGTCTTTAATGGAGTTACTACTGATCAAAGGTTTTATA
ACTTTGAGTGAGGAGACACTTCTTTTGGCAAATATTTGTAATGGCTTATC
ATTGGGCTTCACCTCCATTGCATGTACAATATTTTTACTCAACCTGGATC
AACTGAGTTCTGTACAACACCTTATCAATTNATTGCATGTACAATATTTT
TACTCAACCTGGATCAACTGAGTTCTATACAACACCTTATCAATTGGCCA
AGAAAAAAACCAACTGTCATACTGTATTCCATGTTAATGATATTCTATAT
TGGTAGACAAATATTTGTTTTGGCTGCTTTGAACTCACTTAAAATCCGAA
ACTCCGATTTTAGAACAAATGTAGCACTTCAGATCATGGTGATTTACTTT
AGTCTTATGTTTTACTGCATGAAAGTTGCACTATATTTAAGAGCTGTAAG
GGATGTAGTTTATGCATTACAGAGACATGGAAAAGGAAAGATACACTGGA
GATATTATTCTGTTGTGATTGTACCAACAATATTAGCTGTGCTATTTATA
TCAGAGTGTTACTCAAACGACAAACAATGGACCCAACAAATGTTTGATCG
AACCTACGTTAAGGTCATTCTTTTGGTGCTGATGGGATTCACAGCTTTGA
TTGGATTCGGTTCAACGATCACCATTTTGACACAGCAAATATTGAATTTT
AGAAGCCTCGACCTGAGCTTCAGCGATGGGTTTACCAGACTATCACAAGC
TAACCGTTTAAGAAACATTTTTGTGACATCAGTTATCGTTACTGTGTTTT
TGTCGAATAATATAAACTTTGCCCTTGTCGAATTTAATGCTGTTCAACCT
AAACTTGTGATTGTTGATAGCGTTTTCCATTTATTGTTGGTAAGCTAATG
GAAGATATCCTTTTTCATCCACAAACTGCTTGAATTACAACTTACTTCTT
TCAGTTGCATTCCTAGTAATAAGTGTCCTGAGTCTGTAAAATTATTTATT
TCCTCTACTAACTCATTATTTTCATTTTTCAAAAGTTTTGATTTTTGGCA
CCTAGGAACAAGTTTTTCATCCTTGCTAAAATTAGGCTCTTTGGATAATT
GAACCTAAGCCTAGTATTGAATTGAATTCTTGTCCAATCATGATATGTAA
GAAATGTAAGAAAGAGATTATAGACTTAGCTAGCAAGTTTTACTCATCCA
GATTTTCACTCAACCAAACTTATCTTGTATTTACAGGGGCTTCACTTCCT
TGTTTTGGAATGGTGGTTTCATGATAAGGTATGATACAATGTTAAAAGTT
TGCAAATTTTCTTCTCGCTTTTCTGTATAATAGTACATTGTTTCTTCCTT
GGAATCCAGTACAATTTGAGAGTAACTCAGGGCGAATTTATTGAGAAAAA
TACTACTTACAGTGTGTCCAAAAATGTGGACAAATTTTTATATAAAGTAA
AATTCTCAAAGCTATATCTAAACTGCAGGCTTAAATTGAAATAAACCAGC
TGCGCTGGAAGCTCCAGCTTAAGAGATTAAAAGATGTGAAGAACGAGTTT
GTTGAGTTGTGTTAGAACGTTGCCTTCAAACTAATAATCAGAAAGCAAAG
TAATCATTTTATTGTAGAGCGAGTATGGGAAATAATCTTAATGAATAAAT
AAACCCAGCTGGAAGTTTAGCTCCTCTAAGTGCCTAAAGTGCCAACCCAA
CCTAGAAAAATAGCCTAAATTAGAGGCCACGGAATTAGCTAAGCATTATT
CTGTTGGGATAATACTTAGAGGAGACTAGGATAAATCAAATAAAATGGTA
CGATAGTGTGTATGTAATAGTAGTATGTTTGGAAAAAAACCTGTGTCTTC
AAAAGGAAAGGTCGTCCAAGCCTTTGAAATTACAACAAAGTCCAAAAATG
ATCATTTTCAGCTATAACACTGTCTGACTGTGAAAATTTCTCCAATCTTG
TTAAAATTTACACATGAACTGTGTTTCAGTATACTTTATTGAATTCTCAT
AGTGATATGTTTGTAAAAAATCTGTGTCGGGTTTGAAAAATCAAAAGGAA
CGGTTGCCAGCCGATGATGATACGACAATAACAAAGTCCAAAACAGGATC
ATTTTCAGCCATACATAACACCACAAAAACTACTCAGATCGTTTTCAAAT
TTACACTGTAATTGTAATTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTA
CACTGTAATTGTAATTTAGTATTCTCTTTTGAATTTCAATGGCTGTGTGT
TTGAAAGTTTCATTGTCAAGTTTGAAAATCCAAAAGGGACGACCAACAAT
TATATCATCATGAAAAATGACGAAGTCCAAAATATGATCATTTTTACAGC
AGAAAATCATGAGAAATGCAACAATCTTACTCAAATTTACACACAAGTAG
TATACTGAATTCAAATATATTAATAGTTTGCTCTCATAGATTATATCTTT
CGAAAATTTACAAGGTTAAGTTTGCTCTCAAAAAGTTTCCCCATCAATCT
TGAAAAAACAGAGTTTGGTTGTGTGCGTCTAGACTGCTAGAAGAGAAGTT
AGCCATAGTTATATGCATTATAAACACTCGATCAGCTGAAGATTCATGTC
CAAGATTTCTCCGAAGGTCTTTCCATCATCAAACTTCTCTTAAATCATGT
CCAAAAACATCATGAATAATGATGAAAATGATCAATTTTTCACTGAGATT
TACCAGTATTTGCTACACAGTCAGCTAGTCCACTTTCGGCAGCCATCTTT
TTCTAAATACTATCGGCCAATCAAATCACAGTATTATCGGAATCAGTGAT
CCGTTTTTGTTAAATCGGAATAGATCATCGGATTAGATAAACAAACAAAA
AATGTCTTGACCGTTATCGGAAGAGAGAATTAAAGGCTCCTAGGCCGGAG
CAATAAGGTTAAAATTCTCTCTTCAATCAATAGATATTCAATTCCCAAGA
TGATTGAATAGGTTTTTGTACCTACCCCGGTGGGGTGGATGTCCTATAAA
TTAACCTGTGTTTGTTCGTCCGTCCGTTCGTTCGTCTGTTACCAACTTTT
CTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGCACAAAGGTGCAGA
ATGGTAGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAAATTT
TGGGCAAATTTCAGCCAAAAGACGGCTAAAAAAAGGGTTTTTAAGACTTT
ATGAATTAAATTGGATCGTTAATTTTTTCTTATTTTTTTGCATGAAAGTA
AGGTAACATCATTGGTAAAAGATGGCTCAAGCAGATTTTCACAAAAAAAA
TTTTCGGCTAAAAAACGAATCTTTATCTATAAGAATCACTATTTATAAGT
AAGTAGATCGATGTTCTTAGCCAAATTATTATTTTTATTATTATTTTTTC
TAAAAGAAGAAAATGTCACGGTAGAGCGCGATGGTTTGAGTTTTCTAGAA
ACCTTATTTTGTGCATTTTTTGGATAGTGGATTGTTTTAAAGAAAAGCGT
TTGATGGTTTTTTTTTTCTTTTTCAAAAGTCTTTTTCAATAGTGTTGATA
ATTTCTATCAATATATATGCTTTCATTAGATTTGTTTGTGATTGATGCTG
CAGAGTGCTCAATGAAATCAGAGCCAATTTAAATTTTAAAAGTTATCTTT
CATCATAAACAAAGTAAATAGTACACTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGATGATTTAAAACTT
TCTTATTGTGTGCTGATATAATTCTCGAAACATTTGGAAGGCAGCTATAA
CTAACTTTCAGGTTGTTACGATTAAAGATCTTGTGGAGGCGGTGGTTCTT
CGGGAAGTTTTTGTCTACAATACTCAGAAACCTTTTTGCTACATTTGTTT
TTACGTTGGTGCTGAACGGGGGGTTGAACCATATAATTTTTCTGGGTCTG
GTTTTCGTTCGTTTTGTGTTCGGTGTTTTGTAAGTTAATTTTTCTTTATA
GCCACTTGACTGAAGTGCATCGTTGTACATTTGGGATGCTCGGTCGAAAA
TCTCCTTGTTTGACGAAATTTTGCTTATCCTTTCAGAGATCATTGTTGGT
ATGCGTTTGATGATGTTTGGTGGATGGTTCGATTTTGTATTACGTAAACG
GGATTACTGTTTGGTTTATTATACGGTTTGTATGTCCCGTCTAGCAGATT
TAAAGTGATATCAAGAAAATTAACGATTGTCAAGTTTGTGTCTATTGTAA
TTTTGAGATCAAATTCTTCTCTAAAGAGCTGAATAAAATCTTTCCTGATT
TTATCGGCGTCGTGACCATTGATTACTTCGAAACAAGAAAGACCATCATC
ACGGTATAGACCAGATATCTCGATACCATACTTTTCGCTCAGACGGTAGA
GTATAAATAGGCCGACCAATTCGCATAATTTCATTATATATTTTTTTTAT
GTCTTATGTGTTTCATTGTTTCAATGTTCATTGATTAGTTTTGATAATCA
GGTTCACTTGTTAAGATTGAAACATTAAGTATACAAGTCATAAAATTTTG
CATAAATCATGAGGATTTTACTTTATATAAATATTTGTCAGCTTTTTTTG
GGACACACTGTAGTTTGGACCACAGCCTTAGTTATCTTAAATATATAAAA
AATACTAAATTCTTCCCTTAGGAATTGAGGACGCCTTTCAAATGGCAACG
CCAGCGAGAAGTTCGAAAATTAGCACAAAAATCACGTCATGTTGCCTTCA
CAAGCCACAAATCATCTGAAAGTCTTGCTGTTATCCAGTGAAAGATTGGA
ATTTTGTGACTGGTTTTGTAAGAAAGTCCTACTTTCTTTTTTAATTTAGC
AAATTTTTATTTATTTAAAGGGGTACAAGGGAATAATAAATTAATATTAA
AAGACTGTTACTTTAAATAGAGCTAATATTGCTAAATGCAAAGGGAAACN
ACTTCTTTTTCTAAACAATTTCCGTTCAATGGACACTCATTCTTCTTTCT
GCAGTTGCACAATTTTTCGTTTTCATTATTTGTATCTACTTGGTGATTTA
AAACTTTCTTATTGTGTGCTGATATAATTCTCGAAACAGTTGGAAGGCAG
CTATAACTAACTTTCAGGTTGTTACGNATTTGAATTCAAAAGCAGCTGCG
CTGGAAGGTCAGGACGAAAACCTTAGAGCAATGTAACGGAGAAGTGTTGA
TATTTAAGAAGCCTAGCATTTCAAAAGCTTCACATGTTTTAAAAGCTCAT
TTGGTGGAAACTTCAGAGAAAAGAAGGATCAAACTATCTATCATATTCGT
CTGTTGGTGTCATATCATTGTGTGTATAGTTGCTTCCTTTCGGTTCACCA
GGCTCTTTCCGTCTGTTATGCTAATTTATGCTAATTGAGTGAAGTGAAAC
GAGGGGAGAAAGTTCCAAATTCGCAACAAAAGACCATCCATCGGTATCTT
AAGCTTGCAAAAGAATCCCTTTATATCAAAATTTTGAGAAACATTTCGCA
TGAGAACGAATCTTGACATGGCTGTAAATCCATAAATAGAGCTGTTTGGA
GCATGGTATTGAACAACATGTTTAAGAGCAGTCTCGCCAATCATTACATT
TGCAGCAAAACTCAAATTGTATAGGTTTGTACAGCTTTGTAACCTGCATG
AACCAGGAAATCTCATTGGATCAATTTAAGGTATTGTCAAGTTCTGGAAA
TCTTCTTCCTCAGATATTGCATCACAGCACCGTCGGACATTTCCTGAAAA
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044344XLOC_044344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071362-exon-scaffold_60-1575043694:651254..652192TCONS_00071362-exon-scaffold_60-1575043694:651254..652192Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1575043694:650865..650906TCONS_00071362-exon-scaffold_60-1575043694:650865..650906Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1575043694:646089..647171TCONS_00071362-exon-scaffold_60-1575043694:646089..647171Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1510915933:651254..652192TCONS_00071362-exon-scaffold_60-1510915933:651254..652192Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1510915933:650865..650906TCONS_00071362-exon-scaffold_60-1510915933:650865..650906Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1510915933:646089..647171TCONS_00071362-exon-scaffold_60-1510915933:646089..647171Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1491911889:651254..652192TCONS_00071362-exon-scaffold_60-1491911889:651254..652192Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1491911889:650865..650906TCONS_00071362-exon-scaffold_60-1491911889:650865..650906Clytia hemisphaericaexon
TCONS_00071362-exon-scaffold_60-1491911889:646089..647171TCONS_00071362-exon-scaffold_60-1491911889:646089..647171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:646089..652192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859593	0.571526	1.08099	1.21189	0.579605	0.707836	0.40187	0.805691	0.3868	0.489403	0.620053	0.356649	0.470631	0.404798	0.293222	0.477835	0.301506	0.220738	0.792901	0.659516	0.517764	0.459997	0.313598	0.610941	1.21152	0.748793	0.26788	0.279878	0.477041	0.353476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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